Publication Information

{'id': 'https://openalex.org/W2582563843', 'doi': 'https://doi.org/10.1038/srep41031', 'title': 'SecretEPDB: a comprehensive web-based resource for secreted effector proteins of the bacterial types III, IV and VI secretion systems', 'display_name': 'SecretEPDB: a comprehensive web-based resource for secreted effector proteins of the bacterial types III, IV and VI secretion systems', 'publication_year': 2017, 'publication_date': '2017-01-23', 'ids': {'openalex': 'https://openalex.org/W2582563843', 'doi': 'https://doi.org/10.1038/srep41031', 'mag': '2582563843', 'pmid': 'https://pubmed.ncbi.nlm.nih.gov/28112271', 'pmcid': 'https://www.ncbi.nlm.nih.gov/pmc/articles/5253721'}, 'language': 'en', 'primary_location': {'is_oa': True, 'landing_page_url': 'https://doi.org/10.1038/srep41031', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S196734849', 'display_name': 'Scientific Reports', 'issn_l': '2045-2322', 'issn': ['2045-2322'], 'is_oa': True, 'is_in_doaj': True, 'is_core': True, 'host_organization': 'https://openalex.org/P4310319908', 'host_organization_name': 'Nature Portfolio', 'host_organization_lineage': ['https://openalex.org/P4310319908', 'https://openalex.org/P4310319965'], 'host_organization_lineage_names': ['Nature Portfolio', 'Springer Nature'], 'type': 'journal'}, 'license': 'cc-by', 'license_id': 'https://openalex.org/licenses/cc-by', 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, 'type': 'article', 'type_crossref': 'journal-article', 'indexed_in': ['crossref', 'pubmed'], 'open_access': {'is_oa': True, 'oa_status': 'gold', 'oa_url': 'https://doi.org/10.1038/srep41031', 'any_repository_has_fulltext': True}, 'authorships': [{'author_position': 'first', 'author': {'id': 'https://openalex.org/A5003105240', 'display_name': 'Yi An', 'orcid': 'https://orcid.org/0000-0002-2667-122X'}, 'institutions': [{'id': 'https://openalex.org/I89652312', 'display_name': 'Northwest A&F University', 'ror': 'https://ror.org/0051rme32', 'country_code': 'CN', 'type': 'education', 'lineage': ['https://openalex.org/I89652312']}], 'countries': ['CN'], 'is_corresponding': False, 'raw_author_name': 'Yi An', 'raw_affiliation_strings': ['College of Information Engineering, Northwest A&F University, Yangling, 712100, China'], 'affiliations': [{'raw_affiliation_string': 'College of Information Engineering, Northwest A&F University, Yangling, 712100, China', 'institution_ids': ['https://openalex.org/I89652312']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5039634399', 'display_name': 'Jiawei Wang', 'orcid': 'https://orcid.org/0000-0001-5940-8113'}, 'institutions': [{'id': 'https://openalex.org/I20231570', 'display_name': 'Peking University', 'ror': 'https://ror.org/02v51f717', 'country_code': 'CN', 'type': 'education', 'lineage': ['https://openalex.org/I20231570']}], 'countries': ['CN'], 'is_corresponding': False, 'raw_author_name': 'Jiawei Wang', 'raw_affiliation_strings': ['School of Electronic and Computer Engineering, Peking University, Beijing, 100871, China'], 'affiliations': [{'raw_affiliation_string': 'School of Electronic and Computer Engineering, Peking University, Beijing, 100871, China', 'institution_ids': ['https://openalex.org/I20231570']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5100369818', 'display_name': 'Chen Li', 'orcid': 'https://orcid.org/0000-0002-1847-754X'}, 'institutions': [{'id': 'https://openalex.org/I56590836', 'display_name': 'Monash University', 'ror': 'https://ror.org/02bfwt286', 'country_code': 'AU', 'type': 'education', 'lineage': ['https://openalex.org/I56590836']}], 'countries': ['AU'], 'is_corresponding': False, 'raw_author_name': 'Chen Li', 'raw_affiliation_strings': ['Biomedicine Discovery Institute and Department of Microbiology, Infection and Immunity Program, Monash University, Melbourne, VIC 3800, Australia'], 'affiliations': [{'raw_affiliation_string': 'Biomedicine Discovery Institute and Department of Microbiology, Infection and Immunity Program, Monash University, Melbourne, VIC 3800, Australia', 'institution_ids': ['https://openalex.org/I56590836']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5059942694', 'display_name': 'Jerico Revote', 'orcid': 'https://orcid.org/0000-0002-0381-3600'}, 'institutions': [{'id': 'https://openalex.org/I56590836', 'display_name': 'Monash University', 'ror': 'https://ror.org/02bfwt286', 'country_code': 'AU', 'type': 'education', 'lineage': ['https://openalex.org/I56590836']}], 'countries': ['AU'], 'is_corresponding': False, 'raw_author_name': 'Jerico Revote', 'raw_affiliation_strings': ['Monash Bioinformatics Platform, Monash University, Melbourne, VIC 3800, Australia'], 'affiliations': [{'raw_affiliation_string': 'Monash Bioinformatics Platform, Monash University, Melbourne, VIC 3800, Australia', 'institution_ids': ['https://openalex.org/I56590836']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5100354659', 'display_name': 'Yang Zhang', 'orcid': 'https://orcid.org/0000-0002-2739-1916'}, 'institutions': [{'id': 'https://openalex.org/I89652312', 'display_name': 'Northwest A&F University', 'ror': 'https://ror.org/0051rme32', 'country_code': 'CN', 'type': 'education', 'lineage': ['https://openalex.org/I89652312']}], 'countries': ['CN'], 'is_corresponding': False, 'raw_author_name': 'Yang Zhang', 'raw_affiliation_strings': ['College of Information Engineering, Northwest A&F University, Yangling, 712100, China'], 'affiliations': [{'raw_affiliation_string': 'College of Information Engineering, Northwest A&F University, Yangling, 712100, China', 'institution_ids': ['https://openalex.org/I89652312']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5017073551', 'display_name': 'Thomas Naderer', 'orcid': 'https://orcid.org/0000-0003-2691-0283'}, 'institutions': [{'id': 'https://openalex.org/I56590836', 'display_name': 'Monash University', 'ror': 'https://ror.org/02bfwt286', 'country_code': 'AU', 'type': 'education', 'lineage': ['https://openalex.org/I56590836']}], 'countries': ['AU'], 'is_corresponding': False, 'raw_author_name': 'Thomas Naderer', 'raw_affiliation_strings': ['Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Infection and Immunity Program, Monash University, Melbourne, VIC 3800, Australia'], 'affiliations': [{'raw_affiliation_string': 'Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Infection and Immunity Program, Monash University, Melbourne, VIC 3800, Australia', 'institution_ids': ['https://openalex.org/I56590836']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5039138118', 'display_name': 'Morihiro Hayashida', 'orcid': 'https://orcid.org/0000-0001-7961-0175'}, 'institutions': [{'id': 'https://openalex.org/I4399598384', 'display_name': 'Kyoto University Institute for Chemical Research', 'ror': 'https://ror.org/0349bbg69', 'country_code': None, 'type': 'facility', 'lineage': ['https://openalex.org/I22299242', 'https://openalex.org/I4399598384']}, {'id': 'https://openalex.org/I22299242', 'display_name': 'Kyoto University', 'ror': 'https://ror.org/02kpeqv85', 'country_code': 'JP', 'type': 'education', 'lineage': ['https://openalex.org/I22299242']}], 'countries': ['JP'], 'is_corresponding': False, 'raw_author_name': 'Morihiro Hayashida', 'raw_affiliation_strings': ['Bioinformatics Center, Institute for Chemical Research, Kyoto University, Kyoto, 611-0011, Uji, Japan'], 'affiliations': [{'raw_affiliation_string': 'Bioinformatics Center, Institute for Chemical Research, Kyoto University, Kyoto, 611-0011, Uji, Japan', 'institution_ids': ['https://openalex.org/I4399598384', 'https://openalex.org/I22299242']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5016330265', 'display_name': 'Tatsuya Akutsu', 'orcid': 'https://orcid.org/0000-0001-9763-797X'}, 'institutions': [{'id': 'https://openalex.org/I4399598384', 'display_name': 'Kyoto University Institute for Chemical Research', 'ror': 'https://ror.org/0349bbg69', 'country_code': None, 'type': 'facility', 'lineage': ['https://openalex.org/I22299242', 'https://openalex.org/I4399598384']}, {'id': 'https://openalex.org/I22299242', 'display_name': 'Kyoto University', 'ror': 'https://ror.org/02kpeqv85', 'country_code': 'JP', 'type': 'education', 'lineage': ['https://openalex.org/I22299242']}], 'countries': ['JP'], 'is_corresponding': False, 'raw_author_name': 'Tatsuya Akutsu', 'raw_affiliation_strings': ['Bioinformatics Center, Institute for Chemical Research, Kyoto University, Kyoto, 611-0011, Uji, Japan'], 'affiliations': [{'raw_affiliation_string': 'Bioinformatics Center, Institute for Chemical Research, Kyoto University, Kyoto, 611-0011, Uji, Japan', 'institution_ids': ['https://openalex.org/I4399598384', 'https://openalex.org/I22299242']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5058054791', 'display_name': 'Geoffrey I. Webb', 'orcid': 'https://orcid.org/0000-0001-9963-5169'}, 'institutions': [{'id': 'https://openalex.org/I56590836', 'display_name': 'Monash University', 'ror': 'https://ror.org/02bfwt286', 'country_code': 'AU', 'type': 'education', 'lineage': ['https://openalex.org/I56590836']}], 'countries': ['AU'], 'is_corresponding': False, 'raw_author_name': 'Geoffrey I. Webb', 'raw_affiliation_strings': ['Monash Centre for Data Science, Faculty of Information Technology, Monash University, Melbourne, VIC 3800, Australia'], 'affiliations': [{'raw_affiliation_string': 'Monash Centre for Data Science, Faculty of Information Technology, Monash University, Melbourne, VIC 3800, Australia', 'institution_ids': ['https://openalex.org/I56590836']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5004968684', 'display_name': 'Trevor Lithgow', 'orcid': 'https://orcid.org/0000-0002-0102-7884'}, 'institutions': [{'id': 'https://openalex.org/I56590836', 'display_name': 'Monash University', 'ror': 'https://ror.org/02bfwt286', 'country_code': 'AU', 'type': 'education', 'lineage': ['https://openalex.org/I56590836']}], 'countries': ['AU'], 'is_corresponding': False, 'raw_author_name': 'Trevor Lithgow', 'raw_affiliation_strings': ['Biomedicine Discovery Institute and Department of Microbiology, Infection and Immunity Program, Monash University, Melbourne, VIC 3800, Australia'], 'affiliations': [{'raw_affiliation_string': 'Biomedicine Discovery Institute and Department of Microbiology, Infection and Immunity Program, Monash University, Melbourne, VIC 3800, Australia', 'institution_ids': ['https://openalex.org/I56590836']}]}, {'author_position': 'last', 'author': {'id': 'https://openalex.org/A5012709797', 'display_name': 'Jiangning Song', 'orcid': 'https://orcid.org/0000-0001-8031-9086'}, 'institutions': [{'id': 'https://openalex.org/I56590836', 'display_name': 'Monash University', 'ror': 'https://ror.org/02bfwt286', 'country_code': 'AU', 'type': 'education', 'lineage': ['https://openalex.org/I56590836']}], 'countries': ['AU'], 'is_corresponding': False, 'raw_author_name': 'Jiangning Song', 'raw_affiliation_strings': ['Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Infection and Immunity Program, Monash University, Melbourne, VIC 3800, Australia'], 'affiliations': [{'raw_affiliation_string': 'Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Infection and Immunity Program, Monash University, Melbourne, VIC 3800, Australia', 'institution_ids': ['https://openalex.org/I56590836']}]}], 'institution_assertions': [], 'countries_distinct_count': 3, 'institutions_distinct_count': 5, 'corresponding_author_ids': [], 'corresponding_institution_ids': [], 'apc_list': {'value': 1890, 'currency': 'EUR', 'value_usd': 2190, 'provenance': 'doaj'}, 'apc_paid': {'value': 1890, 'currency': 'EUR', 'value_usd': 2190, 'provenance': 'doaj'}, 'fwci': 4.778, 'has_fulltext': True, 'fulltext_origin': 'pdf', 'cited_by_count': 42, 'citation_normalized_percentile': {'value': 0.999487, 'is_in_top_1_percent': True, 'is_in_top_10_percent': True}, 'cited_by_percentile_year': {'min': 95, 'max': 96}, 'biblio': {'volume': '7', 'issue': '1', 'first_page': None, 'last_page': None}, 'is_retracted': False, 'is_paratext': False, 'primary_topic': {'id': 'https://openalex.org/T11684', 'display_name': 'Vibrio bacteria research studies', 'score': 0.9945, 'subfield': {'id': 'https://openalex.org/subfields/1310', 'display_name': 'Endocrinology'}, 'field': {'id': 'https://openalex.org/fields/13', 'display_name': 'Biochemistry, Genetics and Molecular Biology'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}, 'topics': [{'id': 'https://openalex.org/T11684', 'display_name': 'Vibrio bacteria research studies', 'score': 0.9945, 'subfield': {'id': 'https://openalex.org/subfields/1310', 'display_name': 'Endocrinology'}, 'field': {'id': 'https://openalex.org/fields/13', 'display_name': 'Biochemistry, Genetics and Molecular Biology'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}, {'id': 'https://openalex.org/T10015', 'display_name': 'Genomics and Phylogenetic Studies', 'score': 0.9889, 'subfield': {'id': 'https://openalex.org/subfields/1312', 'display_name': 'Molecular Biology'}, 'field': {'id': 'https://openalex.org/fields/13', 'display_name': 'Biochemistry, Genetics and Molecular Biology'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}, {'id': 'https://openalex.org/T10120', 'display_name': 'Bacterial Genetics and Biotechnology', 'score': 0.9881, 'subfield': {'id': 'https://openalex.org/subfields/1311', 'display_name': 'Genetics'}, 'field': {'id': 'https://openalex.org/fields/13', 'display_name': 'Biochemistry, Genetics and Molecular Biology'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}], 'keywords': [{'id': 'https://openalex.org/keywords/secretory-protein', 'display_name': 'Secretory protein', 'score': 0.45935252}], 'concepts': [{'id': 'https://openalex.org/C51785407', 'wikidata': 'https://www.wikidata.org/wiki/Q2627568', 'display_name': 'Effector', 'level': 2, 'score': 0.97226804}, {'id': 'https://openalex.org/C49039625', 'wikidata': 'https://www.wikidata.org/wiki/Q84230', 'display_name': 'Secretion', 'level': 2, 'score': 0.8877332}, {'id': 'https://openalex.org/C14036430', 'wikidata': 'https://www.wikidata.org/wiki/Q3736076', 'display_name': 'Function (biology)', 'level': 2, 'score': 0.60389215}, {'id': 'https://openalex.org/C86803240', 'wikidata': 'https://www.wikidata.org/wiki/Q420', 'display_name': 'Biology', 'level': 0, 'score': 0.58281434}, {'id': 'https://openalex.org/C60987743', 'wikidata': 'https://www.wikidata.org/wiki/Q1460232', 'display_name': 'Virulence', 'level': 3, 'score': 0.56629914}, {'id': 'https://openalex.org/C130211564', 'wikidata': 'https://www.wikidata.org/wiki/Q21199165', 'display_name': 'Type three secretion system', 'level': 4, 'score': 0.5546747}, {'id': 'https://openalex.org/C70721500', 'wikidata': 'https://www.wikidata.org/wiki/Q177005', 'display_name': 'Computational biology', 'level': 1, 'score': 0.50403184}, {'id': 'https://openalex.org/C2778827730', 'wikidata': 'https://www.wikidata.org/wiki/Q24944355', 'display_name': 'Type VI secretion system', 'level': 4, 'score': 0.47607416}, {'id': 'https://openalex.org/C156399914', 'wikidata': 'https://www.wikidata.org/wiki/Q7444454', 'display_name': 'Secretory protein', 'level': 3, 'score': 0.45935252}, {'id': 'https://openalex.org/C2993175405', 'wikidata': 'https://www.wikidata.org/wiki/Q8054', 'display_name': 'Bacterial protein', 'level': 3, 'score': 0.45666888}, {'id': 'https://openalex.org/C95444343', 'wikidata': 'https://www.wikidata.org/wiki/Q7141', 'display_name': 'Cell biology', 'level': 1, 'score': 0.3796115}, {'id': 'https://openalex.org/C523546767', 'wikidata': 'https://www.wikidata.org/wiki/Q10876', 'display_name': 'Bacteria', 'level': 2, 'score': 0.37954414}, {'id': 'https://openalex.org/C54355233', 'wikidata': 'https://www.wikidata.org/wiki/Q7162', 'display_name': 'Genetics', 'level': 1, 'score': 0.19684929}, {'id': 'https://openalex.org/C55493867', 'wikidata': 'https://www.wikidata.org/wiki/Q7094', 'display_name': 'Biochemistry', 'level': 1, 'score': 0.17069703}, {'id': 'https://openalex.org/C104317684', 'wikidata': 'https://www.wikidata.org/wiki/Q7187', 'display_name': 'Gene', 'level': 2, 'score': 0.16017196}], 'mesh': [{'descriptor_ui': 'D001419', 'descriptor_name': 'Bacteria', 'qualifier_ui': 'Q000378', 'qualifier_name': 'metabolism', 'is_major_topic': True}, {'descriptor_ui': 'D001426', 'descriptor_name': 'Bacterial Proteins', 'qualifier_ui': 'Q000378', 'qualifier_name': 'metabolism', 'is_major_topic': True}, {'descriptor_ui': 'D016208', 'descriptor_name': 'Databases, Factual', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': True}, {'descriptor_ui': 'D000069296', 'descriptor_name': 'Type III Secretion Systems', 'qualifier_ui': 'Q000378', 'qualifier_name': 'metabolism', 'is_major_topic': True}, {'descriptor_ui': 'D000069319', 'descriptor_name': 'Type IV Secretion Systems', 'qualifier_ui': 'Q000378', 'qualifier_name': 'metabolism', 'is_major_topic': True}, {'descriptor_ui': 'D000069376', 'descriptor_name': 'Type VI Secretion Systems', 'qualifier_ui': 'Q000378', 'qualifier_name': 'metabolism', 'is_major_topic': True}, {'descriptor_ui': 'D037521', 'descriptor_name': 'Virulence Factors', 'qualifier_ui': 'Q000378', 'qualifier_name': 'metabolism', 'is_major_topic': True}, {'descriptor_ui': 'D001419', 'descriptor_name': 'Bacteria', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D001426', 'descriptor_name': 'Bacterial Proteins', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D001426', 'descriptor_name': 'Bacterial Proteins', 'qualifier_ui': 'Q000235', 'qualifier_name': 'genetics', 'is_major_topic': False}, {'descriptor_ui': 'D001426', 'descriptor_name': 'Bacterial Proteins', 'qualifier_ui': 'Q000737', 'qualifier_name': 'chemistry', 'is_major_topic': False}, {'descriptor_ui': 'D019143', 'descriptor_name': 'Evolution, Molecular', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D054884', 'descriptor_name': 'Host-Pathogen Interactions', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D020407', 'descriptor_name': 'Internet', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D017433', 'descriptor_name': 'Protein Structure, Secondary', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D000069296', 'descriptor_name': 'Type III Secretion Systems', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D000069319', 'descriptor_name': 'Type IV Secretion Systems', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D000069376', 'descriptor_name': 'Type VI Secretion Systems', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D037521', 'descriptor_name': 'Virulence Factors', 'qualifier_ui': 'Q000235', 'qualifier_name': 'genetics', 'is_major_topic': False}, {'descriptor_ui': 'D037521', 'descriptor_name': 'Virulence Factors', 'qualifier_ui': 'Q000737', 'qualifier_name': 'chemistry', 'is_major_topic': False}, {'descriptor_ui': 'D037521', 'descriptor_name': 'Virulence Factors', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}], 'locations_count': 6, 'locations': [{'is_oa': True, 'landing_page_url': 'https://doi.org/10.1038/srep41031', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S196734849', 'display_name': 'Scientific Reports', 'issn_l': '2045-2322', 'issn': ['2045-2322'], 'is_oa': True, 'is_in_doaj': True, 'is_core': True, 'host_organization': 'https://openalex.org/P4310319908', 'host_organization_name': 'Nature Portfolio', 'host_organization_lineage': ['https://openalex.org/P4310319908', 'https://openalex.org/P4310319965'], 'host_organization_lineage_names': ['Nature Portfolio', 'Springer Nature'], 'type': 'journal'}, 'license': 'cc-by', 'license_id': 'https://openalex.org/licenses/cc-by', 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, {'is_oa': True, 'landing_page_url': 'https://europepmc.org/articles/pmc5253721', 'pdf_url': 'https://europepmc.org/articles/pmc5253721?pdf=render', 'source': {'id': 'https://openalex.org/S4306400806', 'display_name': 'Europe PMC (PubMed Central)', 'issn_l': None, 'issn': None, 'is_oa': True, 'is_in_doaj': False, 'is_core': False, 'host_organization': 'https://openalex.org/I1303153112', 'host_organization_name': 'European Bioinformatics Institute', 'host_organization_lineage': ['https://openalex.org/I1303153112'], 'host_organization_lineage_names': ['European Bioinformatics Institute'], 'type': 'repository'}, 'license': 'cc-by', 'license_id': 'https://openalex.org/licenses/cc-by', 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, {'is_oa': True, 'landing_page_url': 'https://research.monash.edu/en/publications/fc410ba2-1edd-4309-98bb-1c096da25900', 'pdf_url': 'https://research.monash.edu/files/24945712/24265971_oa.pdf', 'source': {'id': 'https://openalex.org/S4306402625', 'display_name': 'Monash University Research Portal (Monash University)', 'issn_l': None, 'issn': None, 'is_oa': True, 'is_in_doaj': False, 'is_core': False, 'host_organization': 'https://openalex.org/I56590836', 'host_organization_name': 'Monash University', 'host_organization_lineage': ['https://openalex.org/I56590836'], 'host_organization_lineage_names': ['Monash University'], 'type': 'repository'}, 'license': 'cc-by', 'license_id': 'https://openalex.org/licenses/cc-by', 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, {'is_oa': True, 'landing_page_url': 'http://hdl.handle.net/2433/218740', 'pdf_url': 'https://repository.kulib.kyoto-u.ac.jp/dspace/bitstream/2433/218740/1/srep41031.pdf', 'source': {'id': 'https://openalex.org/S4306401454', 'display_name': 'Kyoto University Research Information Repository (Kyoto University)', 'issn_l': None, 'issn': None, 'is_oa': True, 'is_in_doaj': False, 'is_core': False, 'host_organization': 'https://openalex.org/I22299242', 'host_organization_name': 'Kyoto University', 'host_organization_lineage': ['https://openalex.org/I22299242'], 'host_organization_lineage_names': ['Kyoto University'], 'type': 'repository'}, 'license': 'cc-by', 'license_id': 'https://openalex.org/licenses/cc-by', 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, {'is_oa': True, 'landing_page_url': 'https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5253721', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S2764455111', 'display_name': 'PubMed Central', 'issn_l': None, 'issn': None, 'is_oa': True, 'is_in_doaj': False, 'is_core': False, 'host_organization': 'https://openalex.org/I1299303238', 'host_organization_name': 'National Institutes of Health', 'host_organization_lineage': ['https://openalex.org/I1299303238'], 'host_organization_lineage_names': ['National Institutes of Health'], 'type': 'repository'}, 'license': None, 'license_id': None, 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, {'is_oa': False, 'landing_page_url': 'https://pubmed.ncbi.nlm.nih.gov/28112271', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S4306525036', 'display_name': 'PubMed', 'issn_l': None, 'issn': None, 'is_oa': False, 'is_in_doaj': False, 'is_core': False, 'host_organization': 'https://openalex.org/I1299303238', 'host_organization_name': 'National Institutes of Health', 'host_organization_lineage': ['https://openalex.org/I1299303238'], 'host_organization_lineage_names': ['National Institutes of Health'], 'type': 'repository'}, 'license': None, 'license_id': None, 'version': None, 'is_accepted': False, 'is_published': False}], 'best_oa_location': {'is_oa': True, 'landing_page_url': 'https://doi.org/10.1038/srep41031', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S196734849', 'display_name': 'Scientific Reports', 'issn_l': '2045-2322', 'issn': ['2045-2322'], 'is_oa': True, 'is_in_doaj': True, 'is_core': True, 'host_organization': 'https://openalex.org/P4310319908', 'host_organization_name': 'Nature Portfolio', 'host_organization_lineage': ['https://openalex.org/P4310319908', 'https://openalex.org/P4310319965'], 'host_organization_lineage_names': ['Nature Portfolio', 'Springer Nature'], 'type': 'journal'}, 'license': 'cc-by', 'license_id': 'https://openalex.org/licenses/cc-by', 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, 'sustainable_development_goals': [], 'grants': [], 'datasets': [], 'versions': [], 'referenced_works_count': 67, 'referenced_works': ['https://openalex.org/W1687906393', 'https://openalex.org/W1792685479', 'https://openalex.org/W1908391556', 'https://openalex.org/W1938986183', 'https://openalex.org/W1952228151', 'https://openalex.org/W1966260873', 'https://openalex.org/W1973067432', 'https://openalex.org/W1976555793', 'https://openalex.org/W1988272131', 'https://openalex.org/W1988987265', 'https://openalex.org/W1993548347', 'https://openalex.org/W1994902865', 'https://openalex.org/W1995989434', 'https://openalex.org/W1999373693', 'https://openalex.org/W2006192061', 'https://openalex.org/W2011729533', 'https://openalex.org/W2012673943', 'https://openalex.org/W2013784236', 'https://openalex.org/W2019152307', 'https://openalex.org/W2021093679', 'https://openalex.org/W2025767948', 'https://openalex.org/W2026402444', 'https://openalex.org/W2029525597', 'https://openalex.org/W2031271762', 'https://openalex.org/W2031923764', 'https://openalex.org/W2040516599', 'https://openalex.org/W2041309451', 'https://openalex.org/W2056351919', 'https://openalex.org/W2056521266', 'https://openalex.org/W2058505231', 'https://openalex.org/W2060081211', 'https://openalex.org/W2066073349', 'https://openalex.org/W2068532894', 'https://openalex.org/W2070156647', 'https://openalex.org/W2077904132', 'https://openalex.org/W2081413516', 'https://openalex.org/W2085102470', 'https://openalex.org/W2089594628', 'https://openalex.org/W2090535305', 'https://openalex.org/W2090728933', 'https://openalex.org/W2096321626', 'https://openalex.org/W2097623920', 'https://openalex.org/W2102357455', 'https://openalex.org/W2104189207', 'https://openalex.org/W2113257791', 'https://openalex.org/W2114604135', 'https://openalex.org/W2115434912', 'https://openalex.org/W2116273677', 'https://openalex.org/W2125411892', 'https://openalex.org/W2125676148', 'https://openalex.org/W2126478370', 'https://openalex.org/W2127322768', 'https://openalex.org/W2127683898', 'https://openalex.org/W2130599662', 'https://openalex.org/W2131474431', 'https://openalex.org/W2131848047', 'https://openalex.org/W2132639360', 'https://openalex.org/W2142062999', 'https://openalex.org/W2147526198', 'https://openalex.org/W2155997698', 'https://openalex.org/W2168002090', 'https://openalex.org/W2170441710', 'https://openalex.org/W2170563234', 'https://openalex.org/W2210129644', 'https://openalex.org/W2217161021', 'https://openalex.org/W2532873024', 'https://openalex.org/W2739999456'], 'related_works': ['https://openalex.org/W4384526382', 'https://openalex.org/W4307512220', 'https://openalex.org/W3216004349', 'https://openalex.org/W3009389754', 'https://openalex.org/W2982652283', 'https://openalex.org/W2966782723', 'https://openalex.org/W2925022214', 'https://openalex.org/W2470108822', 'https://openalex.org/W2395694339', 'https://openalex.org/W2041309451'], 'abstract_inverted_index': {'Abstract': [0], 'Bacteria': [1], 'translocate': [2], 'effector': [3, 19, 36, 72, 101, 130, 152], 'molecules': [4], 'to': [5, 22, 126], 'host': [6, 24], 'cells': [7], 'through': [8], 'highly': [9], 'evolved': [10], 'secretion': [11, 46, 77, 82, 88, 205], 'systems.': [12, 206], 'By': [13], 'definition,': [14], 'the': [15, 28, 96, 117, 194], 'function': [16], 'of': [17, 34, 43, 74, 95, 100, 151, 161, 196], 'these': [18, 35], 'proteins': [20, 37, 73, 102, 153], 'is': [21, 121, 133, 141, 177], 'manipulate': [23], 'cell': [25], 'biology': [26], 'and': [27, 31, 51, 85, 106, 109, 116, 123, 173, 193], 'sequence,': [29], 'structural': [30, 108], 'functional': [32, 110], 'annotations': [33, 94, 150], 'will': [38, 184], 'provide': [39], 'a': [40, 56, 144, 187], 'better': [41], 'understanding': [42], 'how': [44], 'bacterial': [45, 49, 204], 'systems': [47], 'promote': [48], 'survival': [50], 'virulence.': [52], 'Here': [53], 'we': [54], 'developed': [55], 'knowledgebase,': [57], 'termed': [58], 'SecretEPDB': [59, 91, 156], '(Bacterial': [60], 'Secret': [61], 'ed': [62], 'E': [63], 'ffector': [64], 'P': [65], 'rotein': [66], 'D': [67], 'ata': [68], 'B': [69], 'ase),': [70], 'for': [71, 190, 199], 'type': [75, 80, 86], 'III': [76], 'system': [78, 83, 89], '(T3SS),': [79], 'IV': [81], '(T4SS)': [84], 'VI': [87], '(T6SS).': [90], 'provides': [92], 'enriched': [93], 'aforementioned': [97], 'three': [98], 'classes': [99], 'by': [103, 135, 143], 'manually': [104], 'extracting': [105], 'integrating': [107], 'information': [111], 'from': [112], 'currently': [113], 'available': [114], 'databases': [115], 'literature.': [118], 'The': [119, 149], 'database': [120], 'conservative': [122], 'strictly': [124], 'curated': [125], 'ensure': [127], 'that': [128, 138, 180], 'every': [129], 'protein': [131, 162, 164, 166], 'entry': [132], 'supported': [134], 'experimental': [136], 'evidence': [137], 'demonstrates': [139], 'it': [140], 'secreted': [142], 'T3SS,': [145], 'T4SS': [146], 'or': [147], 'T6SS.': [148], 'documented': [154], 'in': [155, 159], 'are': [157], 'provided': [158], 'terms': [160], 'characteristics,': [163], 'function,': [165], 'secondary': [167], 'structure,': [168], 'Pfam': [169], 'domains,': [170], 'metabolic': [171], 'pathway': [172], 'evolutionary': [174], 'details.': [175], 'It': [176], 'our': [178], 'hope': [179], 'this': [181], 'integrated': [182], 'knowledgebase': [183], 'serve': [185], 'as': [186], 'useful': [188], 'resource': [189], 'biological': [191], 'investigation': [192], 'generation': [195], 'new': [197], 'hypotheses': [198], 'research': [200], 'efforts': [201], 'aimed': [202], 'at': [203]}, 'cited_by_api_url': 'https://api.openalex.org/works?filter=cites:W2582563843', 'counts_by_year': [{'year': 2024, 'cited_by_count': 6}, {'year': 2023, 'cited_by_count': 4}, {'year': 2022, 'cited_by_count': 2}, {'year': 2021, 'cited_by_count': 3}, {'year': 2020, 'cited_by_count': 10}, {'year': 2019, 'cited_by_count': 5}, {'year': 2018, 'cited_by_count': 8}, {'year': 2017, 'cited_by_count': 4}], 'updated_date': '2024-12-15T09:55:42.682525', 'created_date': '2017-02-03'}