Get quick answers to your questions about the article from our AI researcher chatbot
{'id': 'https://openalex.org/W4251023000', 'doi': 'https://doi.org/10.4056/sigs.2034671', 'title': 'Meeting report from the first meetings of the Computational Modeling in Biology Network (COMBINE)', 'display_name': 'Meeting report from the first meetings of the Computational Modeling in Biology Network (COMBINE)', 'publication_year': 2011, 'publication_date': '2011-11-30', 'ids': {'openalex': 'https://openalex.org/W4251023000', 'doi': 'https://doi.org/10.4056/sigs.2034671', 'pmid': 'https://pubmed.ncbi.nlm.nih.gov/22180826'}, 'language': 'en', 'primary_location': {'is_oa': True, 'landing_page_url': 'https://doi.org/10.4056/sigs.2034671', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S174963459', 'display_name': 'Standards in Genomic Sciences', 'issn_l': '1944-3277', 'issn': ['1944-3277'], 'is_oa': True, 'is_in_doaj': True, 'is_core': True, 'host_organization': 'https://openalex.org/P4310319900', 'host_organization_name': 'Springer Science+Business Media', 'host_organization_lineage': ['https://openalex.org/P4310319965', 'https://openalex.org/P4310319900'], 'host_organization_lineage_names': ['Springer Nature', 'Springer Science+Business Media'], 'type': 'journal'}, 'license': 'cc-by', 'license_id': 'https://openalex.org/licenses/cc-by', 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, 'type': 'article', 'type_crossref': 'journal-article', 'indexed_in': ['crossref'], 'open_access': {'is_oa': True, 'oa_status': 'gold', 'oa_url': 'https://doi.org/10.4056/sigs.2034671', 'any_repository_has_fulltext': True}, 'authorships': [{'author_position': 'first', 'author': {'id': 'https://openalex.org/A5029796591', 'display_name': 'Nicolas Le Novère', 'orcid': 'https://orcid.org/0000-0002-6309-7327'}, 'institutions': [{'id': 'https://openalex.org/I1303153112', 'display_name': 'European Bioinformatics Institute', 'ror': 'https://ror.org/02catss52', 'country_code': 'GB', 'type': 'facility', 'lineage': ['https://openalex.org/I1303153112', 'https://openalex.org/I4210138560']}], 'countries': ['GB'], 'is_corresponding': False, 'raw_author_name': 'Nicolas Le Novère', 'raw_affiliation_strings': ['1EMBL-EBI, Hinxton, CB10 1SD, UK'], 'affiliations': [{'raw_affiliation_string': '1EMBL-EBI, Hinxton, CB10 1SD, UK', 'institution_ids': ['https://openalex.org/I1303153112']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5016716446', 'display_name': 'Michael Hucka', 'orcid': 'https://orcid.org/0000-0001-9105-5960'}, 'institutions': [{'id': 'https://openalex.org/I122411786', 'display_name': 'California Institute of Technology', 'ror': 'https://ror.org/05dxps055', 'country_code': 'US', 'type': 'education', 'lineage': ['https://openalex.org/I122411786']}], 'countries': ['US'], 'is_corresponding': False, 'raw_author_name': 'Michael Hucka', 'raw_affiliation_strings': ['2Division of Engineering and Applied Science, California Institute of Technology, Pasadena, CA , USA'], 'affiliations': [{'raw_affiliation_string': '2Division of Engineering and Applied Science, California Institute of Technology, Pasadena, CA , USA', 'institution_ids': ['https://openalex.org/I122411786']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5025500153', 'display_name': 'Nadia Anwar', 'orcid': 'https://orcid.org/0000-0001-9544-1551'}, 'institutions': [], 'countries': ['GB'], 'is_corresponding': False, 'raw_author_name': 'Nadia Anwar', 'raw_affiliation_strings': ['3General Bioinformatics Limited. Reading, UK'], 'affiliations': [{'raw_affiliation_string': '3General Bioinformatics Limited. Reading, UK', 'institution_ids': []}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5010789029', 'display_name': 'Gary D. Bader', 'orcid': 'https://orcid.org/0000-0003-0185-8861'}, 'institutions': [{'id': 'https://openalex.org/I185261750', 'display_name': 'University of Toronto', 'ror': 'https://ror.org/03dbr7087', 'country_code': 'CA', 'type': 'education', 'lineage': ['https://openalex.org/I185261750']}], 'countries': ['CA'], 'is_corresponding': False, 'raw_author_name': 'Gary D Bader', 'raw_affiliation_strings': ['4The Donnelly Centre, University of Toronto, Toronto, Ontario M5S, Canada'], 'affiliations': [{'raw_affiliation_string': '4The Donnelly Centre, University of Toronto, Toronto, Ontario M5S, Canada', 'institution_ids': ['https://openalex.org/I185261750']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5037803004', 'display_name': 'Emek Demir', 'orcid': 'https://orcid.org/0000-0002-3663-7113'}, 'institutions': [{'id': 'https://openalex.org/I4210096322', 'display_name': 'New York Structural Biology Center', 'ror': 'https://ror.org/00new7409', 'country_code': 'US', 'type': 'nonprofit', 'lineage': ['https://openalex.org/I4210096322']}], 'countries': ['US'], 'is_corresponding': False, 'raw_author_name': 'Emek Demir', 'raw_affiliation_strings': ['5MSKCC - Computational Biology Center, New York, NY, USA'], 'affiliations': [{'raw_affiliation_string': '5MSKCC - Computational Biology Center, New York, NY, USA', 'institution_ids': ['https://openalex.org/I4210096322']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5053863175', 'display_name': 'Stuart Moodie', 'orcid': 'https://orcid.org/0000-0001-6191-5595'}, 'institutions': [], 'countries': ['GB'], 'is_corresponding': False, 'raw_author_name': 'Stuart Moodie', 'raw_affiliation_strings': ['6Eight Pillars Ltd, 19 Redford Walk, Edinburgh, UK'], 'affiliations': [{'raw_affiliation_string': '6Eight Pillars Ltd, 19 Redford Walk, Edinburgh, UK', 'institution_ids': []}]}, {'author_position': 'last', 'author': {'id': 'https://openalex.org/A5020746275', 'display_name': 'Anatoly Sorokin', 'orcid': 'https://orcid.org/0000-0002-0047-0606'}, 'institutions': [{'id': 'https://openalex.org/I98677209', 'display_name': 'University of Edinburgh', 'ror': 'https://ror.org/01nrxwf90', 'country_code': 'GB', 'type': 'education', 'lineage': ['https://openalex.org/I98677209']}, {'id': 'https://openalex.org/I1303153112', 'display_name': 'European Bioinformatics Institute', 'ror': 'https://ror.org/02catss52', 'country_code': 'GB', 'type': 'facility', 'lineage': ['https://openalex.org/I1303153112', 'https://openalex.org/I4210138560']}, {'id': 'https://openalex.org/I4210096322', 'display_name': 'New York Structural Biology Center', 'ror': 'https://ror.org/00new7409', 'country_code': 'US', 'type': 'nonprofit', 'lineage': ['https://openalex.org/I4210096322']}, {'id': 'https://openalex.org/I122411786', 'display_name': 'California Institute of Technology', 'ror': 'https://ror.org/05dxps055', 'country_code': 'US', 'type': 'education', 'lineage': ['https://openalex.org/I122411786']}, {'id': 'https://openalex.org/I185261750', 'display_name': 'University of Toronto', 'ror': 'https://ror.org/03dbr7087', 'country_code': 'CA', 'type': 'education', 'lineage': ['https://openalex.org/I185261750']}], 'countries': ['CA', 'GB', 'US'], 'is_corresponding': False, 'raw_author_name': 'Anatoly Sorokin', 'raw_affiliation_strings': ['7School of Informatics, University of Edinburgh, Edinburgh, UK', 'Contributed equally to the manuscript', 'Division of Engineering and Applied Science, California Institute of Technology, Pasadena, CA , USA', 'EMBL-EBI, Hinxton, CB10 1SD, UK', 'Eight Pillars Ltd, 19 Redford Walk, Edinburgh, UK', 'General Bioinformatics Limited. Reading, UK', 'MSKCC - Computational Biology Center, New York, NY, USA', 'The Donnelly Centre, University of Toronto, Toronto, Ontario M5S, Canada'], 'affiliations': [{'raw_affiliation_string': '7School of Informatics, University of Edinburgh, Edinburgh, UK', 'institution_ids': ['https://openalex.org/I98677209']}, {'raw_affiliation_string': 'EMBL-EBI, Hinxton, CB10 1SD, UK', 'institution_ids': ['https://openalex.org/I1303153112']}, {'raw_affiliation_string': 'MSKCC - Computational Biology Center, New York, NY, USA', 'institution_ids': ['https://openalex.org/I4210096322']}, {'raw_affiliation_string': 'General Bioinformatics Limited. Reading, UK', 'institution_ids': []}, {'raw_affiliation_string': 'Contributed equally to the manuscript', 'institution_ids': []}, {'raw_affiliation_string': 'Division of Engineering and Applied Science, California Institute of Technology, Pasadena, CA , USA', 'institution_ids': ['https://openalex.org/I122411786']}, {'raw_affiliation_string': 'The Donnelly Centre, University of Toronto, Toronto, Ontario M5S, Canada', 'institution_ids': ['https://openalex.org/I185261750']}, {'raw_affiliation_string': 'Eight Pillars Ltd, 19 Redford Walk, Edinburgh, UK', 'institution_ids': []}]}], 'countries_distinct_count': 3, 'institutions_distinct_count': 5, 'corresponding_author_ids': [], 'corresponding_institution_ids': [], 'apc_list': {'value': 1165, 'currency': 'GBP', 'value_usd': 1429, 'provenance': 'doaj'}, 'apc_paid': {'value': 1165, 'currency': 'GBP', 'value_usd': 1429, 'provenance': 'doaj'}, 'fwci': 0.546, 'has_fulltext': True, 'fulltext_origin': 'pdf', 'cited_by_count': 8, 'citation_normalized_percentile': {'value': 0.593233, 'is_in_top_1_percent': False, 'is_in_top_10_percent': False}, 'cited_by_percentile_year': {'min': 84, 'max': 85}, 'biblio': {'volume': '5', 'issue': '2', 'first_page': '230', 'last_page': '242'}, 'is_retracted': False, 'is_paratext': False, 'primary_topic': {'id': 'https://openalex.org/T10621', 'display_name': 'Stochasticity in Gene Regulatory Networks', 'score': 0.9992, 'subfield': {'id': 'https://openalex.org/subfields/1312', 'display_name': 'Molecular Biology'}, 'field': {'id': 'https://openalex.org/fields/13', 'display_name': 'Biochemistry, Genetics and Molecular Biology'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}, 'topics': [{'id': 'https://openalex.org/T10621', 'display_name': 'Stochasticity in Gene Regulatory Networks', 'score': 0.9992, 'subfield': {'id': 'https://openalex.org/subfields/1312', 'display_name': 'Molecular Biology'}, 'field': {'id': 'https://openalex.org/fields/13', 'display_name': 'Biochemistry, Genetics and Molecular Biology'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}, {'id': 'https://openalex.org/T10887', 'display_name': 'Analysis of Gene Interaction Networks', 'score': 0.9991, 'subfield': {'id': 'https://openalex.org/subfields/1312', 'display_name': 'Molecular Biology'}, 'field': {'id': 'https://openalex.org/fields/13', 'display_name': 'Biochemistry, Genetics and Molecular Biology'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}, {'id': 'https://openalex.org/T13937', 'display_name': 'Challenges and Innovations in Bioinformatics Education', 'score': 0.9964, 'subfield': {'id': 'https://openalex.org/subfields/1312', 'display_name': 'Molecular Biology'}, 'field': {'id': 'https://openalex.org/fields/13', 'display_name': 'Biochemistry, Genetics and Molecular Biology'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}], 'keywords': [{'id': 'https://openalex.org/keywords/sbml', 'display_name': 'SBML', 'score': 0.8314532}, {'id': 'https://openalex.org/keywords/biological-network-integration', 'display_name': 'Biological Network Integration', 'score': 0.541563}, {'id': 'https://openalex.org/keywords/computational-biology', 'display_name': 'Computational Biology', 'score': 0.532476}], 'concepts': [{'id': 'https://openalex.org/C87186988', 'wikidata': 'https://www.wikidata.org/wiki/Q452197', 'display_name': 'SBML', 'level': 4, 'score': 0.8314532}, {'id': 'https://openalex.org/C20136886', 'wikidata': 'https://www.wikidata.org/wiki/Q749647', 'display_name': 'Interoperability', 'level': 2, 'score': 0.70604634}, {'id': 'https://openalex.org/C41008148', 'wikidata': 'https://www.wikidata.org/wiki/Q21198', 'display_name': 'Computer science', 'level': 0, 'score': 0.5306294}, {'id': 'https://openalex.org/C9652623', 'wikidata': 'https://www.wikidata.org/wiki/Q190109', 'display_name': 'Field (mathematics)', 'level': 2, 'score': 0.44501436}, {'id': 'https://openalex.org/C2777904410', 'wikidata': 'https://www.wikidata.org/wiki/Q7397', 'display_name': 'Software', 'level': 2, 'score': 0.43852407}, {'id': 'https://openalex.org/C2522767166', 'wikidata': 'https://www.wikidata.org/wiki/Q2374463', 'display_name': 'Data science', 'level': 1, 'score': 0.332677}, {'id': 'https://openalex.org/C136764020', 'wikidata': 'https://www.wikidata.org/wiki/Q466', 'display_name': 'World Wide Web', 'level': 1, 'score': 0.29797563}, {'id': 'https://openalex.org/C45874996', 'wikidata': 'https://www.wikidata.org/wiki/Q37045', 'display_name': 'Markup language', 'level': 3, 'score': 0.18799779}, {'id': 'https://openalex.org/C8797682', 'wikidata': 'https://www.wikidata.org/wiki/Q2115', 'display_name': 'XML', 'level': 2, 'score': 0.10099667}, {'id': 'https://openalex.org/C33923547', 'wikidata': 'https://www.wikidata.org/wiki/Q395', 'display_name': 'Mathematics', 'level': 0, 'score': 0.0}, {'id': 'https://openalex.org/C202444582', 'wikidata': 'https://www.wikidata.org/wiki/Q837863', 'display_name': 'Pure mathematics', 'level': 1, 'score': 0.0}, {'id': 'https://openalex.org/C199360897', 'wikidata': 'https://www.wikidata.org/wiki/Q9143', 'display_name': 'Programming language', 'level': 1, 'score': 0.0}], 'mesh': [], 'locations_count': 5, 'locations': [{'is_oa': True, 'landing_page_url': 'https://doi.org/10.4056/sigs.2034671', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S174963459', 'display_name': 'Standards in Genomic Sciences', 'issn_l': '1944-3277', 'issn': ['1944-3277'], 'is_oa': True, 'is_in_doaj': True, 'is_core': True, 'host_organization': 'https://openalex.org/P4310319900', 'host_organization_name': 'Springer Science+Business Media', 'host_organization_lineage': ['https://openalex.org/P4310319965', 'https://openalex.org/P4310319900'], 'host_organization_lineage_names': ['Springer Nature', 'Springer Science+Business Media'], 'type': 'journal'}, 'license': 'cc-by', 'license_id': 'https://openalex.org/licenses/cc-by', 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, {'is_oa': True, 'landing_page_url': 'https://europepmc.org/articles/pmc3235518', 'pdf_url': 'https://europepmc.org/articles/pmc3235518?pdf=render', 'source': {'id': 'https://openalex.org/S4306400806', 'display_name': 'Europe PMC (PubMed Central)', 'issn_l': None, 'issn': None, 'is_oa': True, 'is_in_doaj': False, 'is_core': False, 'host_organization': 'https://openalex.org/I1303153112', 'host_organization_name': 'European Bioinformatics Institute', 'host_organization_lineage': ['https://openalex.org/I1303153112'], 'host_organization_lineage_names': ['European Bioinformatics Institute'], 'type': 'repository'}, 'license': 'cc-by', 'license_id': 'https://openalex.org/licenses/cc-by', 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, {'is_oa': True, 'landing_page_url': 'https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3235518', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S2764455111', 'display_name': 'PubMed Central', 'issn_l': None, 'issn': None, 'is_oa': True, 'is_in_doaj': False, 'is_core': False, 'host_organization': 'https://openalex.org/I1299303238', 'host_organization_name': 'National Institutes of Health', 'host_organization_lineage': ['https://openalex.org/I1299303238'], 'host_organization_lineage_names': ['National Institutes of Health'], 'type': 'repository'}, 'license': None, 'license_id': None, 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, {'is_oa': True, 'landing_page_url': 'https://resolver.caltech.edu/CaltechAUTHORS:20121221-151957383', 'pdf_url': 'https://authors.library.caltech.edu/36105/1/LeNovere%3AStandardsInGenomicSciences%3A.pdf', 'source': {'id': 'https://openalex.org/S4306402161', 'display_name': 'CaltechAUTHORS (California Institute of Technology)', 'issn_l': None, 'issn': None, 'is_oa': True, 'is_in_doaj': False, 'is_core': False, 'host_organization': 'https://openalex.org/I122411786', 'host_organization_name': 'California Institute of Technology', 'host_organization_lineage': ['https://openalex.org/I122411786'], 'host_organization_lineage_names': ['California Institute of Technology'], 'type': 'repository'}, 'license': 'cc-by', 'license_id': 'https://openalex.org/licenses/cc-by', 'version': 'acceptedVersion', 'is_accepted': True, 'is_published': False}, {'is_oa': True, 'landing_page_url': 'http://hdl.handle.net/1807/87021', 'pdf_url': 'https://tspace.library.utoronto.ca/bitstream/1807/87021/1/40793_2015_Article_5020230.pdf', 'source': {'id': 'https://openalex.org/S4306400261', 'display_name': 'TSpace (University of Toronto)', 'issn_l': None, 'issn': None, 'is_oa': True, 'is_in_doaj': False, 'is_core': False, 'host_organization': 'https://openalex.org/I185261750', 'host_organization_name': 'University of Toronto', 'host_organization_lineage': ['https://openalex.org/I185261750'], 'host_organization_lineage_names': ['University of Toronto'], 'type': 'repository'}, 'license': 'cc-by', 'license_id': 'https://openalex.org/licenses/cc-by', 'version': 'submittedVersion', 'is_accepted': False, 'is_published': False}], 'best_oa_location': {'is_oa': True, 'landing_page_url': 'https://doi.org/10.4056/sigs.2034671', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S174963459', 'display_name': 'Standards in Genomic Sciences', 'issn_l': '1944-3277', 'issn': ['1944-3277'], 'is_oa': True, 'is_in_doaj': True, 'is_core': True, 'host_organization': 'https://openalex.org/P4310319900', 'host_organization_name': 'Springer Science+Business Media', 'host_organization_lineage': ['https://openalex.org/P4310319965', 'https://openalex.org/P4310319900'], 'host_organization_lineage_names': ['Springer Nature', 'Springer Science+Business Media'], 'type': 'journal'}, 'license': 'cc-by', 'license_id': 'https://openalex.org/licenses/cc-by', 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, 'sustainable_development_goals': [{'score': 0.44, 'id': 'https://metadata.un.org/sdg/17', 'display_name': 'Partnerships for the goals'}], 'grants': [], 'datasets': [], 'versions': [], 'referenced_works_count': 20, 'referenced_works': ['https://openalex.org/W1589685702', 'https://openalex.org/W1969709265', 'https://openalex.org/W1970594207', 'https://openalex.org/W1982039590', 'https://openalex.org/W2006933206', 'https://openalex.org/W2009734094', 'https://openalex.org/W2010502047', 'https://openalex.org/W2034375827', 'https://openalex.org/W2042880070', 'https://openalex.org/W2069157810', 'https://openalex.org/W2092338374', 'https://openalex.org/W2101506009', 'https://openalex.org/W2113218387', 'https://openalex.org/W2114124738', 'https://openalex.org/W2119713119', 'https://openalex.org/W2127950479', 'https://openalex.org/W2128501050', 'https://openalex.org/W2149991291', 'https://openalex.org/W2150908245', 'https://openalex.org/W2164298117'], 'related_works': ['https://openalex.org/W3080133182', 'https://openalex.org/W2565701637', 'https://openalex.org/W2150908245', 'https://openalex.org/W2126025430', 'https://openalex.org/W2082621456', 'https://openalex.org/W2069162648', 'https://openalex.org/W1994518768', 'https://openalex.org/W1987628135', 'https://openalex.org/W1833372769', 'https://openalex.org/W104010570'], 'abstract_inverted_index': {'The': [0, 60, 87], 'Computational': [1], 'Modeling': [2], 'in': [3, 21, 41, 53, 107, 137], 'Biology': [4], 'Network': [5], '(COMBINE),': [6], 'is': [7, 126], 'an': [8], 'initiative': [9], 'to': [10, 130], 'coordinate': [11], 'the': [12, 15, 31, 35, 48, 114, 124], 'development': [13, 102], 'of': [14, 62, 103], 'various': [16], 'community': [17, 108], 'standards': [18, 105, 136], 'and': [19, 25, 47, 75, 82, 97, 111, 121, 134], 'formats': [20, 133], 'computational': [22], 'systems': [23, 110], 'biology': [24], 'related': [26, 135], 'fields.': [27], 'This': [28], 'report': [29], 'summarizes': [30], 'activities': [32], 'pursued': [33], 'at': [34], 'first': [36, 49, 61], 'annual': [37], 'COMBINE': [38, 72], 'meeting': [39], 'held': [40, 52], 'Edinburgh': [42], 'on': [43, 56], 'October': [44], '6-9': [45], '2010': [46], 'HARMONY': [50], 'hackathon,': [51], 'New': [54], 'York': [55], 'April': [57], '18-22': [58], '2011.': [59], 'those': [63], 'meetings': [64, 117], 'hosted': [65], '81': [66], 'attendees.': [67], 'Discussions': [68], 'covered': [69], 'both': [70], 'official': [71], 'standards-(BioPAX,': [73], 'SBGN': [74], 'SBML),': [76], 'as': [77, 79], 'well': [78], 'emerging': [80], 'efforts': [81], 'interoperability': [83], 'between': [84, 113], 'different': [85], 'formats.': [86], 'second': [88], 'meeting,': [89], 'oriented': [90], 'towards': [91], 'software': [92, 109], 'developers,': [93], 'welcomed': [94], '59': [95], 'participants': [96], 'witnessed': [98], 'many': [99], 'technical': [100], 'discussions,': [101], 'improved': [104], 'support': [106], 'conversion': [112], 'standards.': [115], 'Both': [116], 'were': [118], 'resounding': [119], 'successes': [120], 'showed': [122], 'that': [123], 'field': [125], 'now': [127], 'mature': [128], 'enough': [129], 'develop': [131], 'representation': [132], 'a': [138], 'coordinated': [139], 'manner.': [140]}, 'cited_by_api_url': 'https://api.openalex.org/works?filter=cites:W4251023000', 'counts_by_year': [{'year': 2022, 'cited_by_count': 1}, {'year': 2016, 'cited_by_count': 1}, {'year': 2015, 'cited_by_count': 2}, {'year': 2014, 'cited_by_count': 3}, {'year': 2013, 'cited_by_count': 1}], 'updated_date': '2024-08-19T05:08:41.461758', 'created_date': '2022-05-12'}