<scp>SBML</scp>Level 3: an extensible format for the exchange and reuse of biological models

Name: Work Video:
Duration: 3 min 30 s
Sarah Keating; Dagmar Waltemath; Matthias König; Fengkai Zhang; Andreas Dräger; Claudine Chaouiya; Frank Bergmann; Andrew Finney; Colin S. Gillespie; Tomáš Helikar; Stefan Hoops; Rahuman S. Malik‐Sheriff; Stuart Moodie; Ion I. Moraru; Chris J. Myers; Aurélien Naldi; Brett G. Olivier; Sven Sahle; James C. Schaff; Lucian P. Smith; Maciej J. Swat; Denis Thieffry; Leandro Watanabe; Darren J. Wilkinson; Michael L. Blinov; Kimberly Begley; James R. Faeder; Harold Gómez; Thomas M. Hamm; Yuichiro Inagaki; Wolfram Liebermeister; Allyson Lister; Daniel Lucio; Eric Mjolsness; Carole J. Proctor; Karthik Raman; Nicolás Rodríguez; Clifford A. Shaffer; Bruce E. Shapiro; Joerg Stelling; Neil Swainston; Naoki Tanimura; John Wagner; Martin Meier‐Schellersheim; Herbert M. Sauro; Bernhard Ø. Palsson; Hamid Bolouri; Hiroaki Kitano; Akira Funahashi; Henning Hermjakob; John C. Doyle; Michael Hucka; Richard R. Adams; Nicholas Allen; Bastian R. Angermann; Marco Antoniotti; Gary D. Bader; Jan Červený; Mélanie Courtot; Chris D. Cox; Piero Dalle Pezze; Emek Demir; William S. Denney; Harish Dharuri; Julien Dorier; Dirk Drasdo; Ali Ebrahim; Johannes Eichner; Johan Elf; Lukas Endler; Chris T. Evelo; Christoph Flamm; Ronan M. T. Fleming; Martina Fröhlich; Mihai Glont; Emanuel Gonçalves; Martin Golebiewski; Hovakim Grabski; Alex Gutteridge; D. Hachmeister; Leonard A. Harris; Ben Heavner; Ron Henkel; William S. Hlavacek; Bin Hu; Daniel R. Hyduke; Hidde de Jong; Nick Juty; Peter D. Karp; Jonathan R. Karr; Douglas B. Kell; Roland Keller; Ilya Kiselev; Steffen Klamt; Edda Klipp; Christian Knüpfer; Fedor Kolpakov; Falko Krause; Martina Kutmon; Camille Laibe; Conor Lawless; Lu Li; Leslie M. Loew; Rainer Machné; Yukiko Matsuoka; Pedro Mendes; Huaiyu Mi; Florian Mittag; Pedro T. Monteiro; Kedar Nath Natarajan; Poul MF Nielsen; Tramy Nguyen; Alida Palmisano; Jean‐Baptiste Pettit; Thomas Pfau; Robert D. Phair; Tomas Radivoyevitch; Johann M. Rohwer; Oliver Ruebenacker; Julio Sáez-Rodríguez; Martin Scharm; Henning Schmidt; Falk Schreiber; Michaël Schubert; Roman Schulte; Stuart C. Sealfon; Kieran Smallbone; Sylvain Soliman; Melanie I. Stefan; Devin P. Sullivan; Koichi Takahashi; Bas Teusink; David Tolnay; Ibrahim Vazirabad; Axel von Kamp; Ulrike Wittig; Clemens Wrzodek; Finja Wrzodek; Ioannis Xénarios; Anna Zhukova; Jeremy Zucker
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167, 759, 1501, 1527, 2119, 3141, 3167], 'Antimicrobial-Resistant': [143, 761, 1503, 2121, 3143], 'Pathogens,': [144, 762, 1504, 2122, 3144], 'Biomedical': [147, 765, 1507, 2125, 3147], 'Informatics': [148, 766, 1508, 2126, 3148], '(IBMI),': [149, 767, 1509, 2127, 3149], 'Tübingen,': [152, 153, 161, 162, 170, 770, 771, 779, 780, 1512, 1513, 1521, 1522, 1530, 2130, 2131, 2139, 2140, 3152, 3153, 3161, 3162, 3170], 'Department': [155, 272, 385, 528, 600, 706, 731, 773, 843, 885, 931, 1004, 1026, 1047, 1167, 1188, 1260, 1515, 1632, 1745, 1888, 1960, 2066, 2091, 2133, 2203, 2245, 2291, 2364, 2386, 2407, 2527, 2548, 2620, 3362], 'Computer': [157, 389, 604, 775, 887, 1006, 1517, 1749, 1964, 2135, 2247, 2366, 3157, 3243, 3382, 3449], 'Science,': [158, 776, 846, 888, 1007, 1518, 2136, 2206, 2248, 2367, 3158, 3365, 3383, 3450], 'German': [164, 1524], 'Center': [165, 360, 662, 1525, 1720, 2022, 3165], 'Research': [168, 802, 1100, 1117, 1214, 1528, 2162, 2460, 2477, 2574, 3168, 3347, 3495, 3501, 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3225], 'Milton': [230, 1590, 3188], 'Park,': [231, 1591, 3189], 'Oxfordshire,': [232, 1592, 3190], 'Colin': [241, 244, 1601, 1604, 2758], 'S': [242, 245, 311, 314, 1602, 1605, 1671, 1674, 2759, 2766, 2895, 2942], 'Gillespie': [243, 246, 1603, 1606], 'orcid.org/0000-0003-1787-0275': [247, 1607], 'School': [248, 628, 938, 1608, 1988, 2298, 3407], 'Mathematics,': [250, 630, 1028, 1610, 1990, 2388, 3194, 3458], 'Statistics': [251, 631, 1611, 1991, 3195], 'Physics,': [253, 633, 1613, 1993, 3197], 'Newcastle': [254, 256, 634, 636, 913, 915, 1614, 1616, 1994, 1996, 2273, 2275, 3198, 3200, 3394, 3396], 'upon': [257, 637, 916, 1617, 1997, 2276, 3201, 3397], 'Tyne,': [258, 638, 917, 1618, 1998, 2277, 3202, 3398], 'Tomáš': [267, 269, 1627, 1629, 2761], 'Helikar': [268, 270, 1628, 1630], 'orcid.org/0000-0003-3653-1906': [271, 1631], 'Biochemistry,': [274, 1634, 3206], 'Nebraska–Lincoln,': [277, 1637, 3209], 'Lincoln,': [278, 1638, 3210], 'NE,': [279, 1639, 3211], 'Stefan': [288, 290, 1648, 1650, 2763], 'Hoops': [289, 291, 1649, 1651], 'orcid.org/0000-0001-8503-8371': [292, 1652], 'Biocomplexity': [293, 1653], '&': [295, 795, 801, 1099, 1655, 2155, 2161, 2459, 3215, 3340, 3346, 3494, 3612], 'Initiative,': [296, 1656, 3216], 'Virginia,': [299, 1659, 3219], 'Charlottesville,': [300, 1660, 3220], 'VA,': [301, 1011, 1661, 2371, 3221, 3454], 'Rahuman': [310, 313, 1670, 1673, 2765], 'Malik-Sheriff': [312, 315, 1672, 1675], 'orcid.org/0000-0003-0705-9809': [316, 1676], 'Stuart': [334, 337, 1694, 1697, 2768, 3037], 'L': [335, 338, 656, 659, 833, 836, 1695, 1698, 2016, 2019, 2193, 2196, 2769, 2801, 2819], 'Moodie': [336, 339, 1696, 1699], 'orcid.org/0000-0001-6191-5595': [340, 1700], 'Eight': [341, 1701], 'Pillars': [342, 1702, 3224], 'Edinburgh,': [344, 1704, 3226], 'Ion': [353, 356, 1713, 1716, 2771], 'I': [354, 357, 1714, 1717, 2772, 3045], 'Moraru': [355, 358, 1715, 1718], 'orcid.org/0000-0002-3746-9676': [359, 1719], 'Cell': [362, 664, 1722, 2024, 3230], 'Analysis': [363, 665, 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495, 1852, 1855], 'orcid.org/0000-0003-3286-7736': [496, 1856], 'Applied': [497, 1857], 'BioMath,': [498, 1858, 3280], 'LLC,': [499, 1859, 3281], 'Concord,': [500, 1860, 3282], 'MA,': [501, 1861, 3283], 'Lucian': [510, 513, 1870, 1873, 2787], 'P': [511, 514, 1871, 1874, 2788, 3048], 'Smith': [512, 515, 1872, 1875], 'orcid.org/0000-0001-7002-6386': [516, 1876], 'Bioengineering,': [530, 1169, 1190, 1890, 2529, 2550, 3287, 3508], 'Washington,': [533, 1172, 1893, 2532, 3290], 'Seattle,': [534, 1173, 1219, 1894, 2533, 2579, 3291, 3526], 'WA,': [535, 1174, 1220, 1895, 2534, 2580, 3292, 3527], 'Maciej': [544, 547, 1904, 1907, 2790], 'Swat': [546, 549, 1906, 1909], 'Simcyp': [550, 1910], '(a': [551, 1911, 3295], 'Certara': [552, 1912, 3296], 'company),': [553, 1913, 3297], 'Sheffield,': [554, 1914, 3298], 'South': [555, 1915, 3299], 'Yorkshire,': [556, 1916, 3300], 'Denis': [565, 567, 1925, 1927, 2793], 'Thieffry': [566, 568, 1926, 1928], 'orcid.org/0000-0003-0271-1757': [569, 1929], 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2089, 2809], 'Gómez': [727, 730, 2087, 2090], 'Biosystems': [733, 1049, 2093, 2409, 3331, 3467], 'Science': [734, 964, 1050, 1094, 1243, 2094, 2324, 2410, 2454, 2603, 3332, 3433, 3468, 3538], 'ETH': [737, 1058, 2097, 2418, 3335, 3476], 'Zürich,': [738, 1059, 2098, 2419, 3336, 3477], 'Basel,': [739, 1060, 2099, 2420, 3337, 3478], 'Switzerland': [740, 1061, 2100, 2421, 3338, 3479], 'Thomas': [748, 751, 2108, 2111, 2811, 3012], 'Hamm': [750, 753, 2110, 2113], 'orcid.org/0000-0001-9579-7267': [754, 2114], 'Yuichiro': [789, 791, 2149, 2151, 2814], 'Inagaki': [790, 792, 2150, 2152], 'orcid.org/0000-0003-4011-8487': [793, 2153], 'Management': [794, 2154], 'IT': [796, 2156, 3341], 'Consulting': [797, 2157, 3342], 'Division,': [798, 1096, 2158, 2456, 3343, 3491], 'Mizuho': [799, 1097, 2159, 2457, 3344, 3492], 'Information': [800, 1098, 2160, 2458, 2739, 3345, 3493], 'Inc.,': [804, 1102, 2164, 2462, 3349, 3497], 'Tokyo,': [805, 1103, 1238, 2165, 2463, 2598, 3350, 3498, 3533], 'Japan': [806, 1104, 1239, 1247, 1269, 2166, 2464, 2599, 2607, 2629, 3351, 3499, 3534, 3542, 3552], 'Wolfram': [814, 816, 2174, 2176, 2816], 'Liebermeister': [815, 817, 2175, 2177], 'orcid.org/0000-0002-2568-2381': [818, 2178], 'Paris-Saclay,': [820, 2180, 3353], 'INRAE,': [821, 2181, 3354], 'MaIAGE,': [822, 2182, 3355], 'Jouy-en-Josas,': [823, 2183, 3356], 'Allyson': [832, 835, 2192, 2195, 2818], 'Lister': [834, 837, 2194, 2197], 'orcid.org/0000-0002-7702-4495': [838, 2198], 'Oxford': [839, 2199], 'e-Research': [840, 2200, 3359], 'Centre': [841, 961, 2201, 2321, 3360, 3430], '(OeRC),': [842, 2202, 3361], 'Engineering': [845, 953, 2205, 2313, 3364, 3422], 'Oxford,': [849, 850, 2209, 2210, 3368, 3369], 'Daniel': [859, 861, 2219, 2221, 2821, 2946], 'Lucio': [860, 862, 2220, 2222], 'orcid.org/0000-0002-8912-7213': [863, 2223], 'College': [864, 2224], 'NC': [867, 2227, 3374], 'State': [868, 1030, 2228, 2390, 3375, 3460], 'Raleigh,': [870, 2230, 3377], 'NC,': [871, 2231, 3378], 'Eric': [880, 882, 2240, 2242, 2823], 'Mjolsness': [881, 883, 2241, 2243], 'orcid.org/0000-0002-9085-9171': [884, 2244], 'California,': [891, 2251, 3386], 'Irvine,': [892, 2252, 3387], 'Carole': [902, 905, 2262, 2265, 2825], 'Proctor': [904, 907, 2264, 2267], 'orcid.org/0000-0002-1366-1399': [908, 2268], 'Cellular': [911, 2271, 3392], 'Medicine,': [912, 2272, 3393], 'Karthik': [926, 928, 2286, 2288, 2828], 'Raman': [927, 929, 2287, 2289], 'orcid.org/0000-0002-9311-7093': [930, 2290], 'Biotechnology,': [933, 2293, 3402], 'Bhupat': [934, 2294, 3403], 'Jyoti': [936, 2296, 3405], 'Mehta': [937, 2297, 3406], 'Biosciences,': [940, 2300, 3409], 'Indian': [941, 2301, 3410], 'Technology': [944, 2304, 3413], '(IIT)': [945, 2305, 3414], 'Madras,': [946, 956, 970, 2306, 2316, 2330, 3415, 3425, 3439], 'Chennai,': [947, 957, 971, 2307, 2317, 2331, 3416, 3426, 3440], 'India': [948, 958, 972, 2308, 2318, 2332, 3417, 3427, 3441], 'Initiative': [949, 2309], 'Biological': [951, 2311, 3420], '(IBSE),': [954, 2314, 3423], 'IIT': 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2413, 3471], 'Swiss': [1054, 2414, 3472], 'Bioinformatics,': [1057, 2417, 3475], 'Neil': [1069, 1071, 2429, 2431, 2840], 'Swainston': [1070, 1072, 2430, 2432], 'orcid.org/0000-0001-7020-1236': [1073, 2433], 'Integrative': [1076, 2436, 3482], 'Liverpool,': [1080, 1081, 2440, 2441, 3486, 3487], 'Naoki': [1090, 1092, 2450, 2452, 2842], 'Tanimura': [1091, 1093, 2451, 2453], 'Solutions': [1095, 2455, 3490], 'John': [1112, 1114, 1299, 1302, 2472, 2474, 2659, 2662, 2844, 2861], 'Wagner': [1113, 1115, 2473, 2475], 'IBM': [1116, 2476], 'Australia,': [1118, 2478, 3502], 'Melbourne,': [1119, 2479, 3503], 'Vic.,': [1120, 2480, 3504], 'Australia': [1121, 2481, 3505], 'Martin': [1129, 1131, 2489, 2491, 2846, 2925, 3027], 'Meier-Schellersheim': [1130, 1132, 2490, 2492], 'orcid.org/0000-0002-8754-6377': [1133, 2493], 'Herbert': [1160, 1163, 2520, 2523, 2848], 'Sauro': [1162, 1165, 2522, 2525], 'orcid.org/0000-0002-3659-6817': [1166, 2526], 'Bernhard': [1183, 1185, 2543, 2545, 2851], 'Palsson': [1184, 1186, 2544, 2546], 'orcid.org/0000-0003-2357-6785': [1187, 2547], 'San': [1194, 2554, 3512], 'Diego,': [1195, 2555, 3513], 'La': [1196, 2556, 3514], 'Jolla,': [1197, 2557, 3515], 'Hamid': [1207, 1209, 2567, 2569, 2853], 'Bolouri': [1208, 1210, 2568, 2570], 'Immunology,': [1212, 2572, 3519], 'Benaroya': [1213, 2573, 3520], 'at': [1216, 2576, 3523], 'Mason,': [1218, 2578, 3525], 'Hiroaki': [1229, 1231, 2589, 2591, 2855], 'Kitano': [1230, 1232, 2590, 2592], 'orcid.org/0000-0002-3589-1953': [1233, 2593], 'Okinawa': [1240, 2600], 'Okinawa,': [1246, 2606, 3541], 'Akira': [1255, 1257, 2615, 2617, 2857], 'Funahashi': [1256, 1258, 2616, 2618], 'orcid.org/0000-0003-0605-239X': [1259, 2619], 'Biosciences': [1262, 2622, 3545], 'Keio': [1265, 2625, 3548], 'Yokohama,': [1267, 2627, 3550], 'Kanagawa,': [1268, 2628, 3551], 'Henning': [1277, 1279, 2637, 2639, 2859, 3029], 'Hermjakob': [1278, 1280, 2638, 2640], 'orcid.org/0000-0001-8479-0262': [1281, 2641], 'Doyle': [1301, 1304, 2661, 2664], 'orcid.org/0000-0002-1828-2486': [1305, 2665], 'Hucka': [1325, 1329, 2685, 2689, 2865], 'Corresponding': [1326, 2686], 'Author': [1327, 2687, 2738], '[email': [1330, 2690, 3568], 'protected]': [1331, 2691, 3569], 'orcid.org/0000-0001-9105-5960': [1332, 2692], '3': [1353, 1358, 2713, 2718, 3671, 3781], 'members': [1355, 1364, 2715, 2724], 'membersA': [1360, 2720], 'complete': [1361, 2721], 'list': [1362, 2722], 'affiliations': [1366, 2726], 'appears': [1367, 2727], 'in': [1368, 2728, 3586, 3621, 3796], 'Appendix': [1370, 2730], '1Search': [1371, 2731], 'Keating1,2,3,‡,': [2742], 'Waltemath4,‡,': [2744], 'König5,': [2746], 'Zhang6,': [2748], 'Dräger7,8,9,': [2750], 'Chaouiya10,11,': [2752], 'Bergmann3,': [2755], 'Finney12,': [2757], 'Gillespie13,': [2760], 'Helikar14,': [2762], 'Hoops15,': [2764], 'Malik-Sheriff2,': [2767], 'Moodie16,': [2770], 'Moraru17,': [2773], 'Myers18,': [2776], 'Naldi19,': [2778], 'Olivier1,3,20,': [2781], 'Sahle3,': [2783], 'Schaff21,': [2786], 'Smith1,22,': [2789], 'Swat23,': [2792], 'Thieffry19,': [2794], 'Watanabe18,': [2796], 'Wilkinson13,24,': [2799], 'Blinov17,': [2802], 'Begley25,': [2804], 'Faeder26,': [2807], 'Gómez27,': [2810], 'Hamm7,8,': [2813], 'Inagaki28,': [2815], 'Liebermeister29,': [2817], 'Lister30,': [2820], 'Lucio31,': [2822], 'Mjolsness32,': [2824], 'Proctor33,': [2827], 'Raman34,35,36,': [2829], 'Rodriguez37,': [2831], 'Shaffer38,': [2834], 'Shapiro39,': [2837], 'Stelling40,': [2839], 'Swainston41,': [2841], 'Tanimura42,': [2843], 'Wagner43,': [2845], 'Meier-Schellersheim6,': [2847], 'Sauro22,': [2850], 'Palsson44,': [2852], 'Bolouri45,': [2854], 'Kitano46,47,': [2856], 'Funahashi48,': [2858], 'Hermjakob2,': [2860], 'Doyle1,': [2863], '*,1,': [2866], ',': [2867], 'Richard': [2868], 'Adams,': [2870], 'Nicholas': [2871], 'Allen,': [2873], 'Bastian': [2874], 'Angermann,': [2876], 'Marco': [2877], 'Antoniotti,': [2878], 'Gary': [2879], 'D': [2880, 2887, 2937, 2954, 3015], 'Bader,': [2881], 'Jan': [2882], 'Červený,': [2883], 'Mélanie': [2884], 'Courtot,': [2885], 'Cox,': [2888], 'Piero': [2889], 'Dalle': [2890], 'Pezze,': [2891], 'Emek': [2892], 'Demir,': [2893], 'William': [2894, 2941], 'Denney,': [2896], 'Harish': [2897], 'Dharuri,': [2898], 'Julien': [2899], 'Dorier,': [2900], 'Dirk': [2901], 'Drasdo,': [2902], 'Ali': [2903], 'Ebrahim,': [2904], 'Johannes': [2905], 'Eichner,': [2906], 'Johan': [2907], 'Elf,': [2908], 'Lukas': [2909], 'Endler,': [2910], 'Evelo,': [2913], 'Christoph': [2914], 'Flamm,': [2915], 'Ronan': [2916], 'MT': [2917], 'Fleming,': [2918], 'Martina': [2919, 2976], 'Fröhlich,': [2920], 'Mihai': [2921], 'Glont,': [2922], 'Emanuel': [2923], 'Gonçalves,': [2924], 'Golebiewski,': [2926], 'Hovakim': [2927], 'Grabski,': [2928], 'Alex': [2929], 'Gutteridge,': [2930], 'Damon': [2931], 'Hachmeister,': [2932], 'Leonard': [2933], 'Harris,': [2935], 'Benjamin': [2936], 'Heavner,': [2938], 'Ron': [2939], 'Henkel,': [2940], 'Hlavacek,': [2943], 'Bin': [2944], 'Hu,': [2945], 'Hyduke,': [2948], 'Hidde': [2949], 'Jong,': [2950], 'Nick': [2951], 'Juty,': [2952], 'Peter': [2953], 'Karp,': [2955], 'Jonathan': [2956], 'Karr,': [2958], 'Douglas': [2959], 'B': [2960], 'Kell,': [2961], 'Roland': [2962], 'Keller,': [2963], 'Ilya': [2964], 'Kiselev,': [2965], 'Steffen': [2966], 'Klamt,': [2967], 'Edda': [2968], 'Klipp,': [2969], 'Christian': [2970], 'Knüpfer,': [2971], 'Fedor': [2972], 'Kolpakov,': [2973], 'Falko': [2974], 'Krause,': [2975], 'Kutmon,': [2977], 'Camille': [2978], 'Laibe,': [2979], 'Conor': [2980], 'Lawless,': [2981], 'Lu': [2982], 'Li,': [2983], 'Leslie': [2984], 'Loew,': [2986], 'Rainer': [2987], 'Machne,': [2988], 'Yukiko': [2989], 'Matsuoka,': [2990], 'Pedro': [2991, 2997], 'Mendes,': [2992], 'Huaiyu': [2993], 'Mi,': [2994], 'Florian': [2995], 'Mittag,': [2996], 'Monteiro,': [2999], 'Kedar': [3000], 'Nath': [3001], 'Natarajan,': [3002], 'Poul': [3003], 'MF': [3004], 'Nielsen,': [3005], 'Tramy': [3006], 'Nguyen,': [3007], 'Alida': [3008], 'Palmisano,': [3009], 'Jean-Baptiste': [3010], 'Pettit,': [3011], 'Pfau,': [3013], 'Phair,': [3016], 'Tomas': [3017], 'Radivoyevitch,': [3018], 'Johann': [3019], 'Rohwer,': [3021], 'Oliver': [3022], 'Ruebenacker,': [3024], 'Julio': [3025], 'Saez-Rodriguez,': [3026], 'Scharm,': [3028], 'Schmidt,': [3030], 'Falk': [3031], 'Schreiber,': [3032], 'Schubert,': [3034], 'Roman': [3035], 'Schulte,': [3036], 'Sealfon,': [3039], 'Kieran': [3040], 'Smallbone,': [3041], 'Sylvain': [3042], 'Soliman,': [3043], 'Melanie': [3044], 'Stefan,': [3046], 'Devin': [3047], 'Sullivan,': [3049], 'Koichi': [3050], 'Takahashi,': [3051], 'Bas': [3052], 'Teusink,': [3053], 'David': [3054], 'Tolnay,': [3055], 'Ibrahim': [3056], 'Vazirabad,': [3057], 'Axel': [3058], 'Kamp,': [3059], 'Ulrike': [3060], 'Wittig,': [3061], 'Clemens': [3062], 'Wrzodek,': [3063, 3065], 'Finja': [3064], 'Ioannis': [3066], 'Xenarios,': [3067], 'Anna': [3068], 'Zhukova': [3069], 'Jeremy': [3071], 'Zucker': [3072], '1Computing': [3073], '2European': [3084], 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