Title: Development and exploitation of MAGIC experimental populations in eggplant and tomato genetics and breeding
Abstract: AB advanced backcross ABA abscisic acid AMOVA analysis of molecular variance BC backcross bHLH basic-helix-loop-helix BIL backcross inbred line BLINK Bayesian-information and linkage-disequilibrium iteratively nested keyway BLUP best linear unbiased prediction BSA-Seq bulked segregant analysis by sequencing BWA-MEM Burrows-Wheeler alignermaximal exact match CDS coding sequence CSLM confocal laser scanning microscopy CWR crop wild relative DAS Solanum dasyphyllum DH doubled haploid DHY double hybrid Fx filial FA fruit anthocyanin FC fruit chlorophyll FDR false discovery rate FN fruit netting GX generation GAPIT genome association and prediction integrated tool GBS genotyping-by-sequencing GLM general linear model GMS genetic male sterility GP genepool GQ genotype quality GWA genome-wide association GWAS genome-wide association study H heterozygotes HRM high resolution melting IC inter-cross generation IGV integrative genomics viewer IL introgression line INC Solanum incanum INS Solanum insanum KNNi k-nearest neighbour genotype imputation method LD linkage disequilibrium LOD limit of detection MAGIC multi-parent advanced generation intercross MAGReS multi-parent advanced generation recurrent selection MAS marker-assisted selection MEL Solanum melongena MLM mixed linear model MpCD multi-parent cross designs MVMP multivariate multi-parent MYB myeloblastosis NIL near isogenic line NCBI national center for biotechnology information PA plant anthocyanin PC principal component PCA principal component analysis PCR polymerase chain reaction PPB participatory plant breeding vi List of abbreviations PPP public-private partnerships PUC pigmentation under the calyx QTL quantitative trait locus RIL recombinant inbred line ROS reactive oxygen species Sx generation of selfing S3MEGGIC S3 MAGIC eggplant incanum SILEX silica matrix extraction SLC Solanum lycopersicum var.cerasiforme SNP single-nucleotide polymorphism SP Solanum pimpinellifolium SPET single primer enriched technology SSD single-seed descent TASSEL trait analysis by association, evolution and linkage TF transcription factor ToMAGIC tomato MAGIC UTR untranslated region VIGS virus-induced gene silencing WGAIM whole-genome average interval mapping WGS whole genome sequencing GENES: ANT aintegumenta AP1/FUL apetalla 1/fruitfull AP2/ERF apetala 2/ethylene response factor AP3/DEF apetalla 3/deficiens APRR2 Arabidopsis pseudo response regulator 2 bHLH TF basic-helix-loop-helix transcription factor COP1 constitutive photomorphogenic 1 FT flowering locus T FW2.2 fruit weight 2.2 GLK2 golden 2-like MYB IAA9 indole-3-acetic acid 9 J jointless MYB113 myeloblastosis 113 MYB-ATV myeloblastosis-atroviolacea SFT single-flower truss SP1 self-pruning interacting protein 1 SPA suppressor of phya U uniform ripening
Publication Year: 2024
Publication Date: 2024-07-15
Language: en
Type: dissertation
Indexed In: ['crossref']
Access and Citation
AI Researcher Chatbot
Get quick answers to your questions about the article from our AI researcher chatbot