Publication Information

{'id': 'https://openalex.org/W4210835571', 'doi': 'https://doi.org/10.21203/rs.3.rs-23358/v1', 'title': 'Bayesian phylodynamic inferences on the temporal evolution and global transmission of SARS-CoV-2', 'display_name': 'Bayesian phylodynamic inferences on the temporal evolution and global transmission of SARS-CoV-2', 'publication_year': 2020, 'publication_date': '2020-04-16', 'ids': {'openalex': 'https://openalex.org/W4210835571', 'doi': 'https://doi.org/10.21203/rs.3.rs-23358/v1'}, 'language': 'en', 'primary_location': {'is_oa': True, 'landing_page_url': 'https://doi.org/10.21203/rs.3.rs-23358/v1', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S4306402450', 'display_name': 'Research Square (Research Square)', 'issn_l': None, 'issn': None, 'is_oa': True, 'is_in_doaj': False, 'is_core': False, 'host_organization': 'https://openalex.org/I4210096694', 'host_organization_name': 'Research Square (United States)', 'host_organization_lineage': ['https://openalex.org/I4210096694'], 'host_organization_lineage_names': ['Research Square (United States)'], 'type': 'repository'}, 'license': 'cc-by', 'license_id': 'https://openalex.org/licenses/cc-by', 'version': 'submittedVersion', 'is_accepted': False, 'is_published': False}, 'type': 'preprint', 'type_crossref': 'posted-content', 'indexed_in': ['crossref'], 'open_access': {'is_oa': True, 'oa_status': 'green', 'oa_url': 'https://doi.org/10.21203/rs.3.rs-23358/v1', 'any_repository_has_fulltext': True}, 'authorships': [{'author_position': 'first', 'author': {'id': 'https://openalex.org/A5069107293', 'display_name': 'Jianguo Li', 'orcid': 'https://orcid.org/0000-0002-2251-8308'}, 'institutions': [{'id': 'https://openalex.org/I181877577', 'display_name': 'Shanxi University', 'ror': 'https://ror.org/03y3e3s17', 'country_code': 'CN', 'type': 'education', 'lineage': ['https://openalex.org/I181877577']}], 'countries': ['CN'], 'is_corresponding': False, 'raw_author_name': 'Jianguo Li', 'raw_affiliation_strings': [') Laboratory of System Biology, Institutes of Biomedical Sciences, Shanxi University Zhen Li Laboratory of System Biology, Institutes of Biomedical Sciences, Shanxi University Xiaogang Cui Laboratory of System Biology, Institutes of Biomedical Sciences, Shanxi University Changxin Wu', 'Laboratory of System Biology, Institutes of Biomedical Sciences, Shanxi University'], 'affiliations': [{'raw_affiliation_string': ') Laboratory of System Biology, Institutes of Biomedical Sciences, Shanxi University Zhen Li Laboratory of System Biology, Institutes of Biomedical Sciences, Shanxi University Xiaogang Cui Laboratory of System Biology, Institutes of Biomedical Sciences, Shanxi University Changxin Wu', 'institution_ids': ['https://openalex.org/I181877577']}, {'raw_affiliation_string': 'Laboratory of System Biology, Institutes of Biomedical Sciences, Shanxi University', 'institution_ids': ['https://openalex.org/I181877577']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5004610241', 'display_name': 'Zhen Li', 'orcid': 'https://orcid.org/0000-0002-6364-6226'}, 'institutions': [{'id': 'https://openalex.org/I181877577', 'display_name': 'Shanxi University', 'ror': 'https://ror.org/03y3e3s17', 'country_code': 'CN', 'type': 'education', 'lineage': ['https://openalex.org/I181877577']}], 'countries': ['CN'], 'is_corresponding': False, 'raw_author_name': 'Zhen Li', 'raw_affiliation_strings': [') Laboratory of System Biology, Institutes of Biomedical Sciences, Shanxi University Zhen Li Laboratory of System Biology, Institutes of Biomedical Sciences, Shanxi University Xiaogang Cui Laboratory of System Biology, Institutes of Biomedical Sciences, Shanxi University Changxin Wu', 'Laboratory of System Biology, Institutes of Biomedical Sciences, Shanxi University'], 'affiliations': [{'raw_affiliation_string': ') Laboratory of System Biology, Institutes of Biomedical Sciences, Shanxi University Zhen Li Laboratory of System Biology, Institutes of Biomedical Sciences, Shanxi University Xiaogang Cui Laboratory of System Biology, Institutes of Biomedical Sciences, Shanxi University Changxin Wu', 'institution_ids': ['https://openalex.org/I181877577']}, {'raw_affiliation_string': 'Laboratory of System Biology, Institutes of Biomedical Sciences, Shanxi University', 'institution_ids': ['https://openalex.org/I181877577']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5051011891', 'display_name': 'Xiaogang Cui', 'orcid': 'https://orcid.org/0000-0002-3846-3217'}, 'institutions': [{'id': 'https://openalex.org/I181877577', 'display_name': 'Shanxi University', 'ror': 'https://ror.org/03y3e3s17', 'country_code': 'CN', 'type': 'education', 'lineage': ['https://openalex.org/I181877577']}], 'countries': ['CN'], 'is_corresponding': False, 'raw_author_name': 'Xiaogang Cui', 'raw_affiliation_strings': ['Laboratory of System Biology, Institutes of Biomedical Sciences, Shanxi University'], 'affiliations': [{'raw_affiliation_string': 'Laboratory of System Biology, Institutes of Biomedical Sciences, Shanxi University', 'institution_ids': ['https://openalex.org/I181877577']}]}, {'author_position': 'last', 'author': {'id': 'https://openalex.org/A5073492416', 'display_name': 'Changxin Wu', 'orcid': 'https://orcid.org/0000-0002-7416-1662'}, 'institutions': [{'id': 'https://openalex.org/I181877577', 'display_name': 'Shanxi University', 'ror': 'https://ror.org/03y3e3s17', 'country_code': 'CN', 'type': 'education', 'lineage': ['https://openalex.org/I181877577']}], 'countries': ['CN'], 'is_corresponding': False, 'raw_author_name': 'Changxin Wu', 'raw_affiliation_strings': ['Laboratory of System Biology, Institutes of Biomedical Sciences, Shanxi University'], 'affiliations': [{'raw_affiliation_string': 'Laboratory of System Biology, Institutes of Biomedical Sciences, Shanxi University', 'institution_ids': ['https://openalex.org/I181877577']}]}], 'institution_assertions': [], 'countries_distinct_count': 1, 'institutions_distinct_count': 1, 'corresponding_author_ids': [], 'corresponding_institution_ids': [], 'apc_list': None, 'apc_paid': None, 'fwci': None, 'has_fulltext': True, 'fulltext_origin': 'pdf', 'cited_by_count': 2, 'citation_normalized_percentile': {'value': 0.357314, 'is_in_top_1_percent': False, 'is_in_top_10_percent': False}, 'cited_by_percentile_year': {'min': 69, 'max': 73}, 'biblio': {'volume': None, 'issue': None, 'first_page': None, 'last_page': None}, 'is_retracted': False, 'is_paratext': False, 'primary_topic': {'id': 'https://openalex.org/T10118', 'display_name': 'SARS-CoV-2 and COVID-19 Research', 'score': 0.9948, 'subfield': {'id': 'https://openalex.org/subfields/2725', 'display_name': 'Infectious Diseases'}, 'field': {'id': 'https://openalex.org/fields/27', 'display_name': 'Medicine'}, 'domain': {'id': 'https://openalex.org/domains/4', 'display_name': 'Health Sciences'}}, 'topics': [{'id': 'https://openalex.org/T10118', 'display_name': 'SARS-CoV-2 and COVID-19 Research', 'score': 0.9948, 'subfield': {'id': 'https://openalex.org/subfields/2725', 'display_name': 'Infectious Diseases'}, 'field': {'id': 'https://openalex.org/fields/27', 'display_name': 'Medicine'}, 'domain': {'id': 'https://openalex.org/domains/4', 'display_name': 'Health Sciences'}}, {'id': 'https://openalex.org/T11764', 'display_name': 'Evolution and Genetic Dynamics', 'score': 0.9757, 'subfield': {'id': 'https://openalex.org/subfields/1311', 'display_name': 'Genetics'}, 'field': {'id': 'https://openalex.org/fields/13', 'display_name': 'Biochemistry, Genetics and Molecular Biology'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}, {'id': 'https://openalex.org/T10015', 'display_name': 'Genomics and Phylogenetic Studies', 'score': 0.9712, 'subfield': {'id': 'https://openalex.org/subfields/1312', 'display_name': 'Molecular Biology'}, 'field': {'id': 'https://openalex.org/fields/13', 'display_name': 'Biochemistry, Genetics and Molecular Biology'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}], 'keywords': [], 'concepts': [{'id': 'https://openalex.org/C44465124', 'wikidata': 'https://www.wikidata.org/wiki/Q713623', 'display_name': 'Clade', 'level': 4, 'score': 0.9326134}, {'id': 'https://openalex.org/C197583594', 'wikidata': 'https://www.wikidata.org/wiki/Q1052390', 'display_name': 'Most recent common ancestor', 'level': 4, 'score': 0.7076997}, {'id': 'https://openalex.org/C193252679', 'wikidata': 'https://www.wikidata.org/wiki/Q242125', 'display_name': 'Phylogenetic tree', 'level': 3, 'score': 0.6308262}, {'id': 'https://openalex.org/C86803240', 'wikidata': 'https://www.wikidata.org/wiki/Q420', 'display_name': 'Biology', 'level': 0, 'score': 0.63056093}, {'id': 'https://openalex.org/C78458016', 'wikidata': 'https://www.wikidata.org/wiki/Q840400', 'display_name': 'Evolutionary biology', 'level': 1, 'score': 0.57811254}, {'id': 'https://openalex.org/C141231307', 'wikidata': 'https://www.wikidata.org/wiki/Q7020', 'display_name': 'Genome', 'level': 3, 'score': 0.55564785}, {'id': 'https://openalex.org/C2908647359', 'wikidata': 'https://www.wikidata.org/wiki/Q2625603', 'display_name': 'Population', 'level': 2, 'score': 0.50151134}, {'id': 'https://openalex.org/C90132467', 'wikidata': 'https://www.wikidata.org/wiki/Q171184', 'display_name': 'Phylogenetics', 'level': 3, 'score': 0.46584117}, {'id': 'https://openalex.org/C81977670', 'wikidata': 'https://www.wikidata.org/wiki/Q585259', 'display_name': 'Genetic diversity', 'level': 3, 'score': 0.44183153}, {'id': 'https://openalex.org/C54355233', 'wikidata': 'https://www.wikidata.org/wiki/Q7162', 'display_name': 'Genetics', 'level': 1, 'score': 0.41597766}, {'id': 'https://openalex.org/C159047783', 'wikidata': 'https://www.wikidata.org/wiki/Q7215', 'display_name': 'Virology', 'level': 1, 'score': 0.34626925}, {'id': 'https://openalex.org/C104317684', 'wikidata': 'https://www.wikidata.org/wiki/Q7187', 'display_name': 'Gene', 'level': 2, 'score': 0.22056368}, {'id': 'https://openalex.org/C149923435', 'wikidata': 'https://www.wikidata.org/wiki/Q37732', 'display_name': 'Demography', 'level': 1, 'score': 0.123357}, {'id': 'https://openalex.org/C144024400', 'wikidata': 'https://www.wikidata.org/wiki/Q21201', 'display_name': 'Sociology', 'level': 0, 'score': 0.0}], 'mesh': [], 'locations_count': 2, 'locations': [{'is_oa': True, 'landing_page_url': 'https://doi.org/10.21203/rs.3.rs-23358/v1', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S4306402450', 'display_name': 'Research Square (Research Square)', 'issn_l': None, 'issn': None, 'is_oa': True, 'is_in_doaj': False, 'is_core': False, 'host_organization': 'https://openalex.org/I4210096694', 'host_organization_name': 'Research Square (United States)', 'host_organization_lineage': ['https://openalex.org/I4210096694'], 'host_organization_lineage_names': ['Research Square (United States)'], 'type': 'repository'}, 'license': 'cc-by', 'license_id': 'https://openalex.org/licenses/cc-by', 'version': 'submittedVersion', 'is_accepted': False, 'is_published': False}, {'is_oa': True, 'landing_page_url': 'https://doi.org/10.1016/j.jinf.2020.04.016', 'pdf_url': 'http://www.journalofinfection.com/article/S0163445320302279/pdf', 'source': None, 'license': 'other-oa', 'license_id': 'https://openalex.org/licenses/other-oa', 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}], 'best_oa_location': {'is_oa': True, 'landing_page_url': 'https://doi.org/10.21203/rs.3.rs-23358/v1', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S4306402450', 'display_name': 'Research Square (Research Square)', 'issn_l': None, 'issn': None, 'is_oa': True, 'is_in_doaj': False, 'is_core': False, 'host_organization': 'https://openalex.org/I4210096694', 'host_organization_name': 'Research Square (United States)', 'host_organization_lineage': ['https://openalex.org/I4210096694'], 'host_organization_lineage_names': ['Research Square (United States)'], 'type': 'repository'}, 'license': 'cc-by', 'license_id': 'https://openalex.org/licenses/cc-by', 'version': 'submittedVersion', 'is_accepted': False, 'is_published': False}, 'sustainable_development_goals': [{'id': 'https://metadata.un.org/sdg/3', 'score': 0.69, 'display_name': 'Good health and well-being'}], 'grants': [], 'datasets': [], 'versions': [], 'referenced_works_count': 20, 'referenced_works': ['https://openalex.org/W1797986971', 'https://openalex.org/W1965588691', 'https://openalex.org/W1969042907', 'https://openalex.org/W2061929543', 'https://openalex.org/W2152207030', 'https://openalex.org/W2796954509', 'https://openalex.org/W2801159594', 'https://openalex.org/W2807308836', 'https://openalex.org/W3003217347', 'https://openalex.org/W3003223635', 'https://openalex.org/W3003639008', 'https://openalex.org/W3004280078', 'https://openalex.org/W3004318991', 'https://openalex.org/W3004896487', 'https://openalex.org/W3006367816', 'https://openalex.org/W3007831031', 'https://openalex.org/W3008760660', 'https://openalex.org/W3009301294', 'https://openalex.org/W3010528778', 'https://openalex.org/W3187962553'], 'related_works': ['https://openalex.org/W4318392812', 'https://openalex.org/W2949296710', 'https://openalex.org/W2883025420', 'https://openalex.org/W2604174992', 'https://openalex.org/W2174809885', 'https://openalex.org/W2111939425', 'https://openalex.org/W2065083790', 'https://openalex.org/W2057191541', 'https://openalex.org/W1992658754', 'https://openalex.org/W1972725503'], 'abstract_inverted_index': {'Abstract': [0], 'Severe': [1], 'acute': [2], 'respiratory': [3], 'syndrome': [4], 'coronavirus': [5], '2': [6], '(SARS-CoV-2)': [7], 'has': [8, 20], 'spread': [9], 'widely': [10], 'from': [11, 44, 49, 54, 62, 124, 137, 151, 162, 188, 303], 'China': [12], 'to': [13, 79, 122, 273], 'the': [14, 17, 24, 45, 77, 80, 127, 130, 140, 163, 168, 177, 182, 207, 233, 238, 249, 257, 274, 285, 298], 'world.': [15], 'Although': [16, 154], 'viral': [18, 169, 208], 'genome': [19, 209, 287], 'been': [21], 'well': [22], 'characterized,': [23], 'evolutionary': [25], 'origin': [26], 'and': [27, 67, 132, 148, 202, 217, 226, 288], 'global': [28, 101], 'transmission': [29], 'dynamics': [30, 171], 'of': [31, 86, 100, 104, 119, 126, 167, 176, 181, 196, 232, 268, 284, 301], 'SARS-CoV-2': [32, 42, 87, 105, 120, 286, 302], 'remain': [33], 'poorly': [34], 'investigated.': [35], 'To': [36], 'address': [37], 'this,': [38], 'we': [39, 74, 155], 'retrieved': [40], '313': [41], 'genomes': [43, 52], 'GISAID': [46], 'database': [47], '(https://www.gisaid.org),': [48], 'which': [50], '99': [51], 'generated': [53], 'original': [55], 'clinical': [56], 'specimens': [57], 'with': [58], 'exact': [59], 'collection': [60], 'dates': [61], '16': [63], 'countries': [64, 305], 'were': [65, 106, 136, 150, 210], 'selected': [66], 'enrolled': [68], 'for': [69], 'Bayesian': [70, 109, 164], 'phylodynamic': [71], 'analysis.': [72], 'Here': [73], 'show': [75], 'that': [76, 276], 'time': [78], 'Most': [81], 'Recent': [82], 'Common': [83], 'Ancestor': [84], '(tMRCA)': [85], 'is': [88], 'Dec': [89, 96], '11,': [90], '2019': [91], '(95%HPD,': [92], 'Nov': [93], '21': [94], '-': [95], '24).': [97], 'Two': [98], 'clades': [99], 'circulating': [102, 117, 134, 141, 240, 251], 'strains': [103, 118, 135, 142], 'suggested': [107], 'by': [108], 'Maximum': [110], 'Clade': [111, 138, 152, 220, 224], 'Credibility': [112], '(MCC)': [113], 'tree.': [114], 'The': [115], 'USA': [116, 239], 'seemed': [121], 'be': [123], 'both': [125], 'two': [128, 213], 'clades,': [129], 'UK': [131, 250], 'Australia': [133], '1,': [139], 'in': [143, 206, 219, 237, 248, 256, 280, 290], 'Singapore,': [144], 'Japan,': [145], 'Germany,': [146], 'France,': [147], 'Italy': [149], '2.': [153], 'have': [156], 'not': [157], 'found': [158], 'any': [159], 'obvious': [160], 'bottle-neck-effect': [161], 'Skyline': [165], 'Plot': [166], 'population': [170], 'reconstruction,': [172], 'a': [173, 193, 197, 291], 'sharp': [174], 'reduction': [175], 'lower': [178], '95%': [179], 'HPD': [180], 'relative': [183], 'genetic': [184], 'diversity': [185], 'was': [186, 259], 'observed': [187, 234], 'Feb': [189], '5,': [190], '2020,': [191], 'suggesting': [192, 262], 'possible': [194], 'initiation': [195], 'bottle-neck-effect.': [198], 'Thirteen': [199], '(6': [200], 'synonymous': [201], '7': [203], 'non-synonymous)': [204], 'mutations': [205, 215, 235, 300], 'observed,': [211, 261], 'including': [212], 'clade-specific': [214], '(C8782T': [216], 'T1844C': [218], '1': [221], 'rather': [222], 'than': [223], '2)': [225], 'eleven': [227], 'sub-clade': [228], 'specific': [229], 'mutations.': [230], 'All': [231], 'occurred': [236, 247, 279], 'strains,': [241], 'except': [242], 'one': [243], 'mutation': [244, 255], 'T18488C': [245], 'only': [246], 'strains.': [252], 'A': [253], 'non-synonymous': [254], '3’-UTR': [258], 'also': [260], 'an': [263], 'altered': [264], 'RNA': [265], 'replication': [266], 'capacity': [267], 'SARS-CoV-2.': [269], 'We': [270], 'thus': [271], 'came': [272], 'conclusion': [275], 'continuous': [277], 'evolution': [278], 'almost': [281], 'all': [282], 'regions': [283], 'potentially': [289], 'country-specific': [292], 'manner.': [293], 'Further': [294], 'efforts': [295], 'on': [296], 'monitoring': [297], 'genomic': [299], 'different': [304], 'are': [306], 'recommended.': [307]}, 'cited_by_api_url': 'https://api.openalex.org/works?filter=cites:W4210835571', 'counts_by_year': [{'year': 2020, 'cited_by_count': 2}], 'updated_date': '2024-12-27T10:10:04.302877', 'created_date': '2022-02-09'}