Get quick answers to your questions about the article from our AI researcher chatbot
{'id': 'https://openalex.org/W3112500000', 'doi': 'https://doi.org/10.1016/j.ympev.2020.107044', 'title': 'Unraveling the history of the genus Gallus through whole genome sequencing', 'display_name': 'Unraveling the history of the genus Gallus through whole genome sequencing', 'publication_year': 2021, 'publication_date': '2021-05-01', 'ids': {'openalex': 'https://openalex.org/W3112500000', 'doi': 'https://doi.org/10.1016/j.ympev.2020.107044', 'mag': '3112500000', 'pmid': 'https://pubmed.ncbi.nlm.nih.gov/33346111'}, 'language': 'en', 'primary_location': {'is_oa': True, 'landing_page_url': 'https://doi.org/10.1016/j.ympev.2020.107044', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S96989847', 'display_name': 'Molecular Phylogenetics and Evolution', 'issn_l': '1055-7903', 'issn': ['1055-7903', '1095-9513'], 'is_oa': False, 'is_in_doaj': False, 'is_core': True, 'host_organization': 'https://openalex.org/P4310320990', 'host_organization_name': 'Elsevier BV', 'host_organization_lineage': ['https://openalex.org/P4310320990'], 'host_organization_lineage_names': ['Elsevier BV'], 'type': 'journal'}, 'license': 'cc-by', 'license_id': 'https://openalex.org/licenses/cc-by', 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, 'type': 'article', 'type_crossref': 'journal-article', 'indexed_in': ['crossref', 'pubmed'], 'open_access': {'is_oa': True, 'oa_status': 'hybrid', 'oa_url': 'https://doi.org/10.1016/j.ympev.2020.107044', 'any_repository_has_fulltext': True}, 'authorships': [{'author_position': 'first', 'author': {'id': 'https://openalex.org/A5055648418', 'display_name': 'Mahendra Mariadassou', 'orcid': 'https://orcid.org/0000-0003-2986-354X'}, 'institutions': [{'id': 'https://openalex.org/I4210159481', 'display_name': "Mathématiques et Informatique Appliquées du Génome à l'Environnement", 'ror': 'https://ror.org/05qdnns64', 'country_code': 'FR', 'type': 'facility', 'lineage': ['https://openalex.org/I4210088668', 'https://openalex.org/I4210099460', 'https://openalex.org/I4210159481']}], 'countries': ['FR'], 'is_corresponding': False, 'raw_author_name': 'Mahendra Mariadassou', 'raw_affiliation_strings': ["Mathématiques et Informatique Appliquées du Génome à l'Environnement [Jouy-En-Josas]"], 'affiliations': [{'raw_affiliation_string': "Mathématiques et Informatique Appliquées du Génome à l'Environnement [Jouy-En-Josas]", 'institution_ids': ['https://openalex.org/I4210159481']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5059732275', 'display_name': 'Marie Suez', 'orcid': None}, 'institutions': [{'id': 'https://openalex.org/I4210159481', 'display_name': "Mathématiques et Informatique Appliquées du Génome à l'Environnement", 'ror': 'https://ror.org/05qdnns64', 'country_code': 'FR', 'type': 'facility', 'lineage': ['https://openalex.org/I4210088668', 'https://openalex.org/I4210099460', 'https://openalex.org/I4210159481']}], 'countries': ['FR'], 'is_corresponding': False, 'raw_author_name': 'Marie Suez', 'raw_affiliation_strings': ["Mathématiques et Informatique Appliquées du Génome à l'Environnement [Jouy-En-Josas]"], 'affiliations': [{'raw_affiliation_string': "Mathématiques et Informatique Appliquées du Génome à l'Environnement [Jouy-En-Josas]", 'institution_ids': ['https://openalex.org/I4210159481']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5040339613', 'display_name': 'Sanbadam Sathyakumar', 'orcid': None}, 'institutions': [{'id': 'https://openalex.org/I31888360', 'display_name': 'Wildlife Institute of India', 'ror': 'https://ror.org/0554dyz25', 'country_code': 'IN', 'type': 'education', 'lineage': ['https://openalex.org/I31888360']}], 'countries': ['IN'], 'is_corresponding': False, 'raw_author_name': 'Sanbadam Sathyakumar', 'raw_affiliation_strings': ['\u200e Wildlife Insitute India'], 'affiliations': [{'raw_affiliation_string': '\u200e Wildlife Insitute India', 'institution_ids': ['https://openalex.org/I31888360']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5030604526', 'display_name': 'Alain Vignal', 'orcid': 'https://orcid.org/0000-0002-6797-2125'}, 'institutions': [{'id': 'https://openalex.org/I4210154939', 'display_name': "Génétique Physiologie et Systèmes d'Elevage", 'ror': 'https://ror.org/04gg6ne93', 'country_code': 'FR', 'type': 'facility', 'lineage': ['https://openalex.org/I176063091', 'https://openalex.org/I4210088668', 'https://openalex.org/I4210116501', 'https://openalex.org/I4210117091', 'https://openalex.org/I4210121065', 'https://openalex.org/I4210132088', 'https://openalex.org/I4210154939']}], 'countries': ['FR'], 'is_corresponding': False, 'raw_author_name': 'Alain Vignal', 'raw_affiliation_strings': ["Génétique Physiologie et Systèmes d'Elevage"], 'affiliations': [{'raw_affiliation_string': "Génétique Physiologie et Systèmes d'Elevage", 'institution_ids': ['https://openalex.org/I4210154939']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5068675394', 'display_name': 'Marcella Arca', 'orcid': None}, 'institutions': [{'id': 'https://openalex.org/I4210159481', 'display_name': "Mathématiques et Informatique Appliquées du Génome à l'Environnement", 'ror': 'https://ror.org/05qdnns64', 'country_code': 'FR', 'type': 'facility', 'lineage': ['https://openalex.org/I4210088668', 'https://openalex.org/I4210099460', 'https://openalex.org/I4210159481']}], 'countries': ['FR'], 'is_corresponding': False, 'raw_author_name': 'Mariangela Arca', 'raw_affiliation_strings': ["Mathématiques et Informatique Appliquées du Génome à l'Environnement [Jouy-En-Josas]"], 'affiliations': [{'raw_affiliation_string': "Mathématiques et Informatique Appliquées du Génome à l'Environnement [Jouy-En-Josas]", 'institution_ids': ['https://openalex.org/I4210159481']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5086683190', 'display_name': 'Pierre Nicolas', 'orcid': 'https://orcid.org/0000-0002-1133-0609'}, 'institutions': [{'id': 'https://openalex.org/I4210159481', 'display_name': "Mathématiques et Informatique Appliquées du Génome à l'Environnement", 'ror': 'https://ror.org/05qdnns64', 'country_code': 'FR', 'type': 'facility', 'lineage': ['https://openalex.org/I4210088668', 'https://openalex.org/I4210099460', 'https://openalex.org/I4210159481']}], 'countries': ['FR'], 'is_corresponding': False, 'raw_author_name': 'Pierre Nicolas', 'raw_affiliation_strings': ["Mathématiques et Informatique Appliquées du Génome à l'Environnement [Jouy-En-Josas]"], 'affiliations': [{'raw_affiliation_string': "Mathématiques et Informatique Appliquées du Génome à l'Environnement [Jouy-En-Josas]", 'institution_ids': ['https://openalex.org/I4210159481']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5029662965', 'display_name': 'Thomas Faraut', 'orcid': 'https://orcid.org/0000-0001-5156-3434'}, 'institutions': [{'id': 'https://openalex.org/I4210154939', 'display_name': "Génétique Physiologie et Systèmes d'Elevage", 'ror': 'https://ror.org/04gg6ne93', 'country_code': 'FR', 'type': 'facility', 'lineage': ['https://openalex.org/I176063091', 'https://openalex.org/I4210088668', 'https://openalex.org/I4210116501', 'https://openalex.org/I4210117091', 'https://openalex.org/I4210121065', 'https://openalex.org/I4210132088', 'https://openalex.org/I4210154939']}], 'countries': ['FR'], 'is_corresponding': False, 'raw_author_name': 'Thomas Faraut', 'raw_affiliation_strings': ["Génétique Physiologie et Systèmes d'Elevage"], 'affiliations': [{'raw_affiliation_string': "Génétique Physiologie et Systèmes d'Elevage", 'institution_ids': ['https://openalex.org/I4210154939']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5088228287', 'display_name': 'Diane Esquerré', 'orcid': None}, 'institutions': [{'id': 'https://openalex.org/I4210154939', 'display_name': "Génétique Physiologie et Systèmes d'Elevage", 'ror': 'https://ror.org/04gg6ne93', 'country_code': 'FR', 'type': 'facility', 'lineage': ['https://openalex.org/I176063091', 'https://openalex.org/I4210088668', 'https://openalex.org/I4210116501', 'https://openalex.org/I4210117091', 'https://openalex.org/I4210121065', 'https://openalex.org/I4210132088', 'https://openalex.org/I4210154939']}], 'countries': ['FR'], 'is_corresponding': False, 'raw_author_name': 'Diane Esquerre', 'raw_affiliation_strings': ['Génome et Transcriptome - Plateforme Génomique', "Génétique Physiologie et Systèmes d'Elevage"], 'affiliations': [{'raw_affiliation_string': "Génétique Physiologie et Systèmes d'Elevage", 'institution_ids': ['https://openalex.org/I4210154939']}, {'raw_affiliation_string': 'Génome et Transcriptome - Plateforme Génomique', 'institution_ids': []}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5066793038', 'display_name': 'Masahide Nishibori', 'orcid': 'https://orcid.org/0000-0002-8378-4490'}, 'institutions': [], 'countries': [], 'is_corresponding': False, 'raw_author_name': 'Masahide Nishibori', 'raw_affiliation_strings': ['Department of Mechanical System'], 'affiliations': [{'raw_affiliation_string': 'Department of Mechanical System', 'institution_ids': []}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5008305199', 'display_name': 'Agathe Vieaud', 'orcid': None}, 'institutions': [{'id': 'https://openalex.org/I4210129272', 'display_name': 'Génétique Animale et Biologie Intégrative', 'ror': 'https://ror.org/03rkgeb39', 'country_code': 'FR', 'type': 'facility', 'lineage': ['https://openalex.org/I190752583', 'https://openalex.org/I22248866', 'https://openalex.org/I4210088668', 'https://openalex.org/I4210116501', 'https://openalex.org/I4210129272']}], 'countries': ['FR'], 'is_corresponding': False, 'raw_author_name': 'Agathe Vieaud', 'raw_affiliation_strings': ['Génétique Animale et Biologie Intégrative'], 'affiliations': [{'raw_affiliation_string': 'Génétique Animale et Biologie Intégrative', 'institution_ids': ['https://openalex.org/I4210129272']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5101783993', 'display_name': 'Chih‐Feng Chen', 'orcid': 'https://orcid.org/0000-0001-6661-7538'}, 'institutions': [{'id': 'https://openalex.org/I99613584', 'display_name': 'National Taipei University', 'ror': 'https://ror.org/03e29r284', 'country_code': 'TW', 'type': 'education', 'lineage': ['https://openalex.org/I99613584']}, {'id': 'https://openalex.org/I162838928', 'display_name': 'National Chung Hsing University', 'ror': 'https://ror.org/05vn3ca78', 'country_code': 'TW', 'type': 'education', 'lineage': ['https://openalex.org/I162838928']}], 'countries': ['TW'], 'is_corresponding': False, 'raw_author_name': 'Chih-Feng Chen', 'raw_affiliation_strings': ['National Chung Hsing University'], 'affiliations': [{'raw_affiliation_string': 'National Chung Hsing University', 'institution_ids': ['https://openalex.org/I99613584', 'https://openalex.org/I162838928']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5066233763', 'display_name': 'Manh Hung Pham', 'orcid': 'https://orcid.org/0000-0003-3186-818X'}, 'institutions': [{'id': 'https://openalex.org/I4210102522', 'display_name': 'Vietnam National University of Agriculture', 'ror': 'https://ror.org/01abaah21', 'country_code': 'VN', 'type': 'education', 'lineage': ['https://openalex.org/I4210102522']}], 'countries': ['VN'], 'is_corresponding': False, 'raw_author_name': 'Hung Manh Pham', 'raw_affiliation_strings': ['Vietnam National University of Agriculture'], 'affiliations': [{'raw_affiliation_string': 'Vietnam National University of Agriculture', 'institution_ids': ['https://openalex.org/I4210102522']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5063821450', 'display_name': 'Yannick Roman', 'orcid': None}, 'institutions': [], 'countries': [], 'is_corresponding': False, 'raw_author_name': 'Yannick Roman', 'raw_affiliation_strings': ['Le Parc Cleres,'], 'affiliations': [{'raw_affiliation_string': 'Le Parc Cleres,', 'institution_ids': []}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5010009993', 'display_name': 'Frederic F. Hospital', 'orcid': 'https://orcid.org/0000-0003-0825-4470'}, 'institutions': [{'id': 'https://openalex.org/I4210129272', 'display_name': 'Génétique Animale et Biologie Intégrative', 'ror': 'https://ror.org/03rkgeb39', 'country_code': 'FR', 'type': 'facility', 'lineage': ['https://openalex.org/I190752583', 'https://openalex.org/I22248866', 'https://openalex.org/I4210088668', 'https://openalex.org/I4210116501', 'https://openalex.org/I4210129272']}], 'countries': ['FR'], 'is_corresponding': False, 'raw_author_name': 'Frédéric Hospital', 'raw_affiliation_strings': ['Génétique Animale et Biologie Intégrative'], 'affiliations': [{'raw_affiliation_string': 'Génétique Animale et Biologie Intégrative', 'institution_ids': ['https://openalex.org/I4210129272']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5028483092', 'display_name': 'Tatiana Zerjal', 'orcid': 'https://orcid.org/0000-0002-0666-5420'}, 'institutions': [{'id': 'https://openalex.org/I4210129272', 'display_name': 'Génétique Animale et Biologie Intégrative', 'ror': 'https://ror.org/03rkgeb39', 'country_code': 'FR', 'type': 'facility', 'lineage': ['https://openalex.org/I190752583', 'https://openalex.org/I22248866', 'https://openalex.org/I4210088668', 'https://openalex.org/I4210116501', 'https://openalex.org/I4210129272']}], 'countries': ['FR'], 'is_corresponding': False, 'raw_author_name': 'Tatiana Zerjal', 'raw_affiliation_strings': ['Génétique Animale et Biologie Intégrative'], 'affiliations': [{'raw_affiliation_string': 'Génétique Animale et Biologie Intégrative', 'institution_ids': ['https://openalex.org/I4210129272']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5008068522', 'display_name': 'Xavier Rognon', 'orcid': 'https://orcid.org/0000-0003-3087-6794'}, 'institutions': [{'id': 'https://openalex.org/I4210129272', 'display_name': 'Génétique Animale et Biologie Intégrative', 'ror': 'https://ror.org/03rkgeb39', 'country_code': 'FR', 'type': 'facility', 'lineage': ['https://openalex.org/I190752583', 'https://openalex.org/I22248866', 'https://openalex.org/I4210088668', 'https://openalex.org/I4210116501', 'https://openalex.org/I4210129272']}], 'countries': ['FR'], 'is_corresponding': False, 'raw_author_name': 'Xavier X Rognon', 'raw_affiliation_strings': ['Génétique Animale et Biologie Intégrative'], 'affiliations': [{'raw_affiliation_string': 'Génétique Animale et Biologie Intégrative', 'institution_ids': ['https://openalex.org/I4210129272']}]}, {'author_position': 'last', 'author': {'id': 'https://openalex.org/A5001060093', 'display_name': 'Michèle Tixier‐Boichard', 'orcid': 'https://orcid.org/0000-0001-5944-7884'}, 'institutions': [{'id': 'https://openalex.org/I4210129272', 'display_name': 'Génétique Animale et Biologie Intégrative', 'ror': 'https://ror.org/03rkgeb39', 'country_code': 'FR', 'type': 'facility', 'lineage': ['https://openalex.org/I190752583', 'https://openalex.org/I22248866', 'https://openalex.org/I4210088668', 'https://openalex.org/I4210116501', 'https://openalex.org/I4210129272']}], 'countries': ['FR'], 'is_corresponding': False, 'raw_author_name': 'Michèle Tixier-Boichard', 'raw_affiliation_strings': ['Génétique Animale et Biologie Intégrative'], 'affiliations': [{'raw_affiliation_string': 'Génétique Animale et Biologie Intégrative', 'institution_ids': ['https://openalex.org/I4210129272']}]}], 'countries_distinct_count': 4, 'institutions_distinct_count': 7, 'corresponding_author_ids': [], 'corresponding_institution_ids': [], 'apc_list': {'value': 3600, 'currency': 'USD', 'value_usd': 3600, 'provenance': 'doaj'}, 'apc_paid': {'value': 2355, 'currency': 'EUR', 'value_usd': 2539, 'provenance': 'openapc'}, 'fwci': 1.716, 'has_fulltext': True, 'fulltext_origin': 'pdf', 'cited_by_count': 11, 'citation_normalized_percentile': {'value': 0.999825, 'is_in_top_1_percent': True, 'is_in_top_10_percent': True}, 'cited_by_percentile_year': {'min': 89, 'max': 90}, 'biblio': {'volume': '158', 'issue': None, 'first_page': '107044', 'last_page': '107044'}, 'is_retracted': False, 'is_paratext': False, 'primary_topic': {'id': 'https://openalex.org/T13294', 'display_name': 'Origins and Domestication of Chickens', 'score': 0.9988, 'subfield': {'id': 'https://openalex.org/subfields/1103', 'display_name': 'Animal Science and Zoology'}, 'field': {'id': 'https://openalex.org/fields/11', 'display_name': 'Agricultural and Biological Sciences'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}, 'topics': [{'id': 'https://openalex.org/T13294', 'display_name': 'Origins and Domestication of Chickens', 'score': 0.9988, 'subfield': {'id': 'https://openalex.org/subfields/1103', 'display_name': 'Animal Science and Zoology'}, 'field': {'id': 'https://openalex.org/fields/11', 'display_name': 'Agricultural and Biological Sciences'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}, {'id': 'https://openalex.org/T10015', 'display_name': 'RNA Sequencing Data Analysis', 'score': 0.992, 'subfield': {'id': 'https://openalex.org/subfields/1312', 'display_name': 'Molecular Biology'}, 'field': {'id': 'https://openalex.org/fields/13', 'display_name': 'Biochemistry, Genetics and Molecular Biology'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}, {'id': 'https://openalex.org/T13326', 'display_name': 'Cyclotide Bioengineering and Protein Anchoring Mechanisms', 'score': 0.974, 'subfield': {'id': 'https://openalex.org/subfields/1312', 'display_name': 'Molecular Biology'}, 'field': {'id': 'https://openalex.org/fields/13', 'display_name': 'Biochemistry, Genetics and Molecular Biology'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}], 'keywords': [{'id': 'https://openalex.org/keywords/phylogenetic-analysis', 'display_name': 'Phylogenetic Analysis', 'score': 0.531221}, {'id': 'https://openalex.org/keywords/introgression', 'display_name': 'Introgression', 'score': 0.442166}], 'concepts': [{'id': 'https://openalex.org/C86803240', 'wikidata': 'https://www.wikidata.org/wiki/Q420', 'display_name': 'Biology', 'level': 0, 'score': 0.84517854}, {'id': 'https://openalex.org/C193252679', 'wikidata': 'https://www.wikidata.org/wiki/Q242125', 'display_name': 'Phylogenetic tree', 'level': 3, 'score': 0.62239724}, {'id': 'https://openalex.org/C157369684', 'wikidata': 'https://www.wikidata.org/wiki/Q34740', 'display_name': 'Genus', 'level': 2, 'score': 0.5461643}, {'id': 'https://openalex.org/C141231307', 'wikidata': 'https://www.wikidata.org/wiki/Q7020', 'display_name': 'Genome', 'level': 3, 'score': 0.4525995}, {'id': 'https://openalex.org/C24432333', 'wikidata': 'https://www.wikidata.org/wiki/Q2068526', 'display_name': 'Whole genome sequencing', 'level': 4, 'score': 0.4479614}, {'id': 'https://openalex.org/C134387633', 'wikidata': 'https://www.wikidata.org/wiki/Q11395', 'display_name': 'Domestication', 'level': 2, 'score': 0.4474801}, {'id': 'https://openalex.org/C8182607', 'wikidata': 'https://www.wikidata.org/wiki/Q2094405', 'display_name': 'Introgression', 'level': 3, 'score': 0.442166}, {'id': 'https://openalex.org/C78458016', 'wikidata': 'https://www.wikidata.org/wiki/Q840400', 'display_name': 'Evolutionary biology', 'level': 1, 'score': 0.43903086}, {'id': 'https://openalex.org/C90856448', 'wikidata': 'https://www.wikidata.org/wiki/Q431', 'display_name': 'Zoology', 'level': 1, 'score': 0.42972875}, {'id': 'https://openalex.org/C54355233', 'wikidata': 'https://www.wikidata.org/wiki/Q7162', 'display_name': 'Genetics', 'level': 1, 'score': 0.35384238}, {'id': 'https://openalex.org/C104317684', 'wikidata': 'https://www.wikidata.org/wiki/Q7187', 'display_name': 'Gene', 'level': 2, 'score': 0.12788984}], 'mesh': [{'descriptor_ui': 'D002645', 'descriptor_name': 'Chickens', 'qualifier_ui': 'Q000235', 'qualifier_name': 'genetics', 'is_major_topic': True}, {'descriptor_ui': 'D016678', 'descriptor_name': 'Genome', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': True}, {'descriptor_ui': 'D000818', 'descriptor_name': 'Animals', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D005075', 'descriptor_name': 'Biological Evolution', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D002645', 'descriptor_name': 'Chickens', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D002645', 'descriptor_name': 'Chickens', 'qualifier_ui': 'Q000145', 'qualifier_name': 'classification', 'is_major_topic': False}, {'descriptor_ui': 'D004247', 'descriptor_name': 'DNA', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D004247', 'descriptor_name': 'DNA', 'qualifier_ui': 'Q000378', 'qualifier_name': 'metabolism', 'is_major_topic': False}, {'descriptor_ui': 'D004247', 'descriptor_name': 'DNA', 'qualifier_ui': 'Q000737', 'qualifier_name': 'chemistry', 'is_major_topic': False}, {'descriptor_ui': 'D004272', 'descriptor_name': 'DNA, Mitochondrial', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D004272', 'descriptor_name': 'DNA, Mitochondrial', 'qualifier_ui': 'Q000235', 'qualifier_name': 'genetics', 'is_major_topic': False}, {'descriptor_ui': 'D004272', 'descriptor_name': 'DNA, Mitochondrial', 'qualifier_ui': 'Q000145', 'qualifier_name': 'classification', 'is_major_topic': False}, {'descriptor_ui': 'D051456', 'descriptor_name': 'Gene Flow', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D006239', 'descriptor_name': 'Haplotypes', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D016013', 'descriptor_name': 'Likelihood Functions', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D010802', 'descriptor_name': 'Phylogeny', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D020641', 'descriptor_name': 'Polymorphism, Single Nucleotide', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D025341', 'descriptor_name': 'Principal Component Analysis', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D000073336', 'descriptor_name': 'Whole Genome Sequencing', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}], 'locations_count': 4, 'locations': [{'is_oa': True, 'landing_page_url': 'https://doi.org/10.1016/j.ympev.2020.107044', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S96989847', 'display_name': 'Molecular Phylogenetics and Evolution', 'issn_l': '1055-7903', 'issn': ['1055-7903', '1095-9513'], 'is_oa': False, 'is_in_doaj': False, 'is_core': True, 'host_organization': 'https://openalex.org/P4310320990', 'host_organization_name': 'Elsevier BV', 'host_organization_lineage': ['https://openalex.org/P4310320990'], 'host_organization_lineage_names': ['Elsevier BV'], 'type': 'journal'}, 'license': 'cc-by', 'license_id': 'https://openalex.org/licenses/cc-by', 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, {'is_oa': True, 'landing_page_url': 'https://hal.inrae.fr/hal-03155990', 'pdf_url': 'https://hal.inrae.fr/hal-03155990/document', 'source': {'id': 'https://openalex.org/S4306402512', 'display_name': 'HAL (Le Centre pour la Communication Scientifique Directe)', 'issn_l': None, 'issn': None, 'is_oa': True, 'is_in_doaj': False, 'is_core': False, 'host_organization': 'https://openalex.org/I1294671590', 'host_organization_name': 'Centre National de la Recherche Scientifique', 'host_organization_lineage': ['https://openalex.org/I1294671590'], 'host_organization_lineage_names': ['Centre National de la Recherche Scientifique'], 'type': 'repository'}, 'license': 'cc-by-nc-nd', 'license_id': 'https://openalex.org/licenses/cc-by-nc-nd', 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, {'is_oa': True, 'landing_page_url': 'https://hal.inrae.fr/hal-03155990/file/mariadassou-2021-Unraveling_history_genus_Gallus.pdf', 'pdf_url': 'https://hal.inrae.fr/hal-03155990/file/mariadassou-2021-Unraveling_history_genus_Gallus.pdf', 'source': {'id': 'https://openalex.org/S4306402512', 'display_name': 'HAL (Le Centre pour la Communication Scientifique Directe)', 'issn_l': None, 'issn': None, 'is_oa': True, 'is_in_doaj': False, 'is_core': False, 'host_organization': 'https://openalex.org/I1294671590', 'host_organization_name': 'Centre National de la Recherche Scientifique', 'host_organization_lineage': ['https://openalex.org/I1294671590'], 'host_organization_lineage_names': ['Centre National de la Recherche Scientifique'], 'type': 'repository'}, 'license': 'cc-by', 'license_id': 'https://openalex.org/licenses/cc-by', 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, {'is_oa': False, 'landing_page_url': 'https://pubmed.ncbi.nlm.nih.gov/33346111', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S4306525036', 'display_name': 'PubMed', 'issn_l': None, 'issn': None, 'is_oa': False, 'is_in_doaj': False, 'is_core': False, 'host_organization': 'https://openalex.org/I1299303238', 'host_organization_name': 'National Institutes of Health', 'host_organization_lineage': ['https://openalex.org/I1299303238'], 'host_organization_lineage_names': ['National Institutes of Health'], 'type': 'repository'}, 'license': None, 'license_id': None, 'version': None, 'is_accepted': False, 'is_published': False}], 'best_oa_location': {'is_oa': True, 'landing_page_url': 'https://doi.org/10.1016/j.ympev.2020.107044', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S96989847', 'display_name': 'Molecular Phylogenetics and Evolution', 'issn_l': '1055-7903', 'issn': ['1055-7903', '1095-9513'], 'is_oa': False, 'is_in_doaj': False, 'is_core': True, 'host_organization': 'https://openalex.org/P4310320990', 'host_organization_name': 'Elsevier BV', 'host_organization_lineage': ['https://openalex.org/P4310320990'], 'host_organization_lineage_names': ['Elsevier BV'], 'type': 'journal'}, 'license': 'cc-by', 'license_id': 'https://openalex.org/licenses/cc-by', 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, 'sustainable_development_goals': [{'display_name': 'Reduced inequalities', 'id': 'https://metadata.un.org/sdg/10', 'score': 0.6}, {'display_name': 'Peace, justice, and strong institutions', 'id': 'https://metadata.un.org/sdg/16', 'score': 0.45}], 'grants': [{'funder': 'https://openalex.org/F4320320883', 'funder_display_name': 'Agence Nationale de la Recherche', 'award_id': None}], 'datasets': [], 'versions': [], 'referenced_works_count': 63, 'referenced_works': ['https://openalex.org/W1545107334', 'https://openalex.org/W1819873575', 'https://openalex.org/W1954269708', 'https://openalex.org/W1969795226', 'https://openalex.org/W1972344755', 'https://openalex.org/W1986575796', 'https://openalex.org/W1988363710', 'https://openalex.org/W1996835973', 'https://openalex.org/W2000298231', 'https://openalex.org/W2010855562', 'https://openalex.org/W2022984183', 'https://openalex.org/W2023699618', 'https://openalex.org/W2030791749', 'https://openalex.org/W2037882155', 'https://openalex.org/W2065698973', 'https://openalex.org/W2067818448', 'https://openalex.org/W2072535752', 'https://openalex.org/W2085466297', 'https://openalex.org/W2091705028', 'https://openalex.org/W2093929687', 'https://openalex.org/W2096079112', 'https://openalex.org/W2100262918', 'https://openalex.org/W2104223233', 'https://openalex.org/W2110172970', 'https://openalex.org/W2112061642', 'https://openalex.org/W2112776973', 'https://openalex.org/W2122606427', 'https://openalex.org/W2124165778', 'https://openalex.org/W2124362779', 'https://openalex.org/W2127779696', 'https://openalex.org/W2130530163', 'https://openalex.org/W2132926880', 'https://openalex.org/W2134523259', 'https://openalex.org/W2137809599', 'https://openalex.org/W2138140955', 'https://openalex.org/W2141052558', 'https://openalex.org/W2145608399', 'https://openalex.org/W2162758337', 'https://openalex.org/W2164604308', 'https://openalex.org/W2167259894', 'https://openalex.org/W2168133698', 'https://openalex.org/W2168542656', 'https://openalex.org/W2190140475', 'https://openalex.org/W2247820333', 'https://openalex.org/W2263985547', 'https://openalex.org/W2323011265', 'https://openalex.org/W2564456678', 'https://openalex.org/W2607411230', 'https://openalex.org/W2768214229', 'https://openalex.org/W2794694102', 'https://openalex.org/W2801361050', 'https://openalex.org/W2899034416', 'https://openalex.org/W2944223760', 'https://openalex.org/W2996137088', 'https://openalex.org/W2999134657', 'https://openalex.org/W3005835108', 'https://openalex.org/W3031444725', 'https://openalex.org/W3037642677', 'https://openalex.org/W4240246978', 'https://openalex.org/W601050260', 'https://openalex.org/W619406291', 'https://openalex.org/W851586470', 'https://openalex.org/W93588716'], 'related_works': ['https://openalex.org/W4246180656', 'https://openalex.org/W4232124098', 'https://openalex.org/W3212864668', 'https://openalex.org/W3198792856', 'https://openalex.org/W3134909405', 'https://openalex.org/W2898472894', 'https://openalex.org/W2606538715', 'https://openalex.org/W2091169910', 'https://openalex.org/W2084160489', 'https://openalex.org/W1994703076'], 'abstract_inverted_index': {'The': [0, 63, 131, 217], 'genus': [1, 111], 'Gallus': [2, 21, 110, 175], 'is': [3, 31, 68, 192, 222], 'distributed': [4], 'across': [5], 'a': [6, 32, 77, 163], 'large': [7], 'part': [8], 'of': [9, 65, 73, 108, 173, 178, 209, 219, 238, 253, 259], 'Southeast': [10], 'Asia': [11], 'and': [12, 30, 57, 82, 93, 104, 116, 128, 139, 145, 240, 262, 265], 'has': [13, 24], 'received': [14], 'special': [15], 'interest': [16], 'because': [17], 'the': [18, 28, 42, 47, 52, 58, 71, 106, 109, 157, 169, 174, 183, 187, 257], 'domestic': [19], 'chicken,': [20], 'gallus': [22, 167], 'domesticus,': [23], 'spread': [25], 'all': [26, 203], 'over': [27, 100], 'world': [29], 'major': [33], 'protein': [34], 'source': [35], 'for': [36, 186], 'humans.': [37], 'There': [38], 'are': [39, 202], 'four': [40], 'species:': [41], 'red': [43], 'junglefowl': [44, 49, 54, 60], '(G.': [45, 50, 55, 61], 'gallus),': [46], 'green': [48], 'varius),': [51], "Lafayette's": [53], 'lafayettii)': [56], 'grey': [59], 'sonneratii).': [62], 'aim': [64], 'this': [66, 239], 'study': [67], 'to': [69, 125, 161, 224], 'reconstruct': [70], 'history': [72], 'these': [74], 'species': [75], 'by': [76, 142, 156], 'whole': [78], 'genome': [79, 212], 'sequencing': [80], 'approach': [81], 'resolve': [83], 'inconsistencies': [84], 'between': [85], 'well': [86], 'supported': [87, 134], 'topologies': [88, 135], 'inferred': [89], 'using': [90, 112, 143], 'different': [91], 'data': [92], 'methods.': [94, 120], 'Using': [95], 'deep': [96], 'sequencing,': [97], 'we': [98], 'identified': [99], '35': [101], 'million': [102], 'SNPs': [103], 'reconstructed': [105], 'phylogeny': [107], 'both': [113], 'distance': [114], '(BioNJ)': [115], 'maximum': [117], 'likelihood': [118], '(ML)': [119], 'We': [121, 181, 235], 'observed': [122], 'discrepancies': [123], 'according': [124], 'reconstruction': [126], 'methods': [127], 'genomic': [129, 266], 'components.': [130], 'two': [132, 243], 'most': [133], 'were': [136, 140], 'previously': [137], 'reported': [138], 'discriminated': [141], 'phylogenetic': [144], 'gene': [146], 'flow': [147], 'analyses,': [148], 'based': [149], 'on': [150], 'ABBA': [151], 'statistics.': [152], 'Terminology': [153], 'fix': [154], 'requested': [155], 'deputy': [158], 'editor': [159], 'led': [160], 'support': [162], 'scenario': [164], 'with': [165, 206], 'G.': [166, 179, 194, 215, 245], 'as': [168], 'earliest': [170], 'branching': [171], 'lineage': [172], 'genus,': [176], 'instead': [177], 'varius.': [180], 'discuss': [182], 'probable': [184], 'causes': [185], 'discrepancy.': [188], 'A': [189], 'likely': [190], 'one': [191], 'that': [193], 'sonneratii': [195, 246], 'samples': [196, 247, 264], 'from': [197, 214, 248], 'parks': [198], 'or': [199], 'private': [200], 'collections': [201], 'recent': [204], 'hybrids,': [205], 'roughly': [207], '10%': [208], 'their': [210], 'autosomal': [211], 'originating': [213], 'gallus.': [216], 'removal': [218], 'those': [220], 'regions': [221], 'needed': [223], 'provide': [225], 'reliable': [226], 'data,': [227], 'which': [228], 'was': [229], 'not': [230], 'done': [231], 'in': [232, 268], 'previous': [233], 'studies.': [234], 'took': [236], 'care': [237], 'additionally': [241], 'included': [242], 'wild': [244], 'India,': [249], 'showing': [250], 'no': [251], 'trace': [252], 'introgression.': [254], 'This': [255], 'reinforces': [256], 'importance': [258], 'carefully': [260], 'selecting': [261], 'validating': [263], 'components': [267], 'phylogenomics.': [269]}, 'cited_by_api_url': 'https://api.openalex.org/works?filter=cites:W3112500000', 'counts_by_year': [{'year': 2024, 'cited_by_count': 1}, {'year': 2023, 'cited_by_count': 3}, {'year': 2022, 'cited_by_count': 6}, {'year': 2021, 'cited_by_count': 1}], 'updated_date': '2024-09-01T08:52:15.871933', 'created_date': '2020-12-21'}