Complete Genome Sequences of Streptococcus pyogenes Serotype M3, M28, and M89 Strains Isolated from Human Patients in Japan, 1994 to 2009

Name: Complete Genome Sequences of Streptococcus pyogenes Serotype M3, M28, and M89 Strains Isolated from Human Patients in Japan, 1994 to 2009
Uploaded: 2020-10-15
Description: Streptococcus pyogenes (group A Streptococcus [GAS]) is a major human pathogen that occasionally causes severe and life-threatening invasive diseases. Here, we report the complete genome sequences of four GAS strains of three M types, which were isolated from patients with severe invasive disease in Japan.
Kazunori Murase; Takashi Nozawa; Chihiro Aikawa; Miki Nagao; Tadayoshi Ikebe; Akemi Yoshida; Taisei Kikuchi; Ichirô Nakagawa
{'id': 'https://openalex.org/W3092826257', 'doi': 'https://doi.org/10.1128/mra.01047-20', 'title': 'Complete Genome Sequences of Streptococcus pyogenes Serotype M3, M28, and M89 Strains Isolated from Human Patients in Japan, 1994 to 2009', 'display_name': 'Complete Genome Sequences of Streptococcus pyogenes Serotype M3, M28, and M89 Strains Isolated from Human Patients in Japan, 1994 to 2009', 'publication_year': 2020, 'publication_date': '2020-10-15', 'ids': {'openalex': 'https://openalex.org/W3092826257', 'doi': 'https://doi.org/10.1128/mra.01047-20', 'mag': '3092826257', 'pmid': 'https://pubmed.ncbi.nlm.nih.gov/33060279', 'pmcid': 'https://www.ncbi.nlm.nih.gov/pmc/articles/7561698'}, 'language': 'en', 'primary_location': {'is_oa': True, 'landing_page_url': 'https://doi.org/10.1128/mra.01047-20', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S4210232526', 'display_name': 'Microbiology Resource Announcements', 'issn_l': '2576-098X', 'issn': ['2576-098X'], 'is_oa': True, 'is_in_doaj': False, 'is_core': True, 'host_organization': 'https://openalex.org/P4310320263', 'host_organization_name': 'American Society for Microbiology', 'host_organization_lineage': ['https://openalex.org/P4310320263'], 'host_organization_lineage_names': ['American Society for Microbiology'], 'type': 'journal'}, 'license': None, 'license_id': None, 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, 'type': 'article', 'type_crossref': 'journal-article', 'indexed_in': ['crossref', 'pubmed'], 'open_access': {'is_oa': True, 'oa_status': 'gold', 'oa_url': 'https://doi.org/10.1128/mra.01047-20', 'any_repository_has_fulltext': True}, 'authorships': [{'author_position': 'first', 'author': {'id': 'https://openalex.org/A5064494933', 'display_name': 'Kazunori Murase', 'orcid': 'https://orcid.org/0000-0002-7202-4357'}, 'institutions': [{'id': 'https://openalex.org/I22299242', 'display_name': 'Kyoto University', 'ror': 'https://ror.org/02kpeqv85', 'country_code': 'JP', 'type': 'education', 'lineage': ['https://openalex.org/I22299242']}], 'countries': ['JP'], 'is_corresponding': False, 'raw_author_name': 'Kazunori Murase', 'raw_affiliation_strings': ['Department of Microbiology, Graduate School of Medicine, Kyoto University, Kyoto, Japan'], 'affiliations': [{'raw_affiliation_string': 'Department of Microbiology, Graduate School of Medicine, Kyoto University, Kyoto, Japan', 'institution_ids': ['https://openalex.org/I22299242']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5076504113', 'display_name': 'Takashi Nozawa', 'orcid': 'https://orcid.org/0000-0002-1822-5553'}, 'institutions': [{'id': 'https://openalex.org/I22299242', 'display_name': 'Kyoto University', 'ror': 'https://ror.org/02kpeqv85', 'country_code': 'JP', 'type': 'education', 'lineage': ['https://openalex.org/I22299242']}], 'countries': ['JP'], 'is_corresponding': False, 'raw_author_name': 'Takashi Nozawa', 'raw_affiliation_strings': ['Department of Microbiology, Graduate School of Medicine, Kyoto University, Kyoto, Japan'], 'affiliations': [{'raw_affiliation_string': 'Department of Microbiology, Graduate School of Medicine, Kyoto University, Kyoto, Japan', 'institution_ids': ['https://openalex.org/I22299242']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5035351957', 'display_name': 'Chihiro Aikawa', 'orcid': 'https://orcid.org/0000-0002-0639-8852'}, 'institutions': [{'id': 'https://openalex.org/I22299242', 'display_name': 'Kyoto University', 'ror': 'https://ror.org/02kpeqv85', 'country_code': 'JP', 'type': 'education', 'lineage': ['https://openalex.org/I22299242']}], 'countries': ['JP'], 'is_corresponding': False, 'raw_author_name': 'Chihiro Aikawa', 'raw_affiliation_strings': ['Department of Microbiology, Graduate School of Medicine, Kyoto University, Kyoto, Japan'], 'affiliations': [{'raw_affiliation_string': 'Department of Microbiology, Graduate School of Medicine, Kyoto University, Kyoto, Japan', 'institution_ids': ['https://openalex.org/I22299242']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5017974864', 'display_name': 'Miki Nagao', 'orcid': 'https://orcid.org/0000-0002-8886-6145'}, 'institutions': [{'id': 'https://openalex.org/I22299242', 'display_name': 'Kyoto University', 'ror': 'https://ror.org/02kpeqv85', 'country_code': 'JP', 'type': 'education', 'lineage': ['https://openalex.org/I22299242']}], 'countries': ['JP'], 'is_corresponding': False, 'raw_author_name': 'Miki Nagao', 'raw_affiliation_strings': ['Clinical Laboratory Medicine, Graduate School of Medicine, Kyoto University, Kyoto, Japan'], 'affiliations': [{'raw_affiliation_string': 'Clinical Laboratory Medicine, Graduate School of Medicine, Kyoto University, Kyoto, Japan', 'institution_ids': ['https://openalex.org/I22299242']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5020473030', 'display_name': 'Tadayoshi Ikebe', 'orcid': 'https://orcid.org/0000-0003-1021-1728'}, 'institutions': [{'id': 'https://openalex.org/I4210086300', 'display_name': 'National Institute of Infectious Diseases', 'ror': 'https://ror.org/001ggbx22', 'country_code': 'JP', 'type': 'government', 'lineage': ['https://openalex.org/I1333985979', 'https://openalex.org/I4210086300']}], 'countries': ['JP'], 'is_corresponding': False, 'raw_author_name': 'Tadayoshi Ikebe', 'raw_affiliation_strings': ['Department of Bacteriology I, National Institute of Infectious Diseases, Tokyo, Japan'], 'affiliations': [{'raw_affiliation_string': 'Department of Bacteriology I, National Institute of Infectious Diseases, Tokyo, Japan', 'institution_ids': ['https://openalex.org/I4210086300']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5021659719', 'display_name': 'Akemi Yoshida', 'orcid': None}, 'institutions': [{'id': 'https://openalex.org/I118574687', 'display_name': 'University of Miyazaki', 'ror': 'https://ror.org/0447kww10', 'country_code': 'JP', 'type': 'education', 'lineage': ['https://openalex.org/I118574687']}], 'countries': ['JP'], 'is_corresponding': False, 'raw_author_name': 'Akemi Yoshida', 'raw_affiliation_strings': ['Laboratory of Genomics, Frontier Science Research Center, University of Miyazaki, Miyazaki, Japan'], 'affiliations': [{'raw_affiliation_string': 'Laboratory of Genomics, Frontier Science Research Center, University of Miyazaki, Miyazaki, Japan', 'institution_ids': ['https://openalex.org/I118574687']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5035440708', 'display_name': 'Taisei Kikuchi', 'orcid': 'https://orcid.org/0000-0003-2759-9167'}, 'institutions': [{'id': 'https://openalex.org/I118574687', 'display_name': 'University of Miyazaki', 'ror': 'https://ror.org/0447kww10', 'country_code': 'JP', 'type': 'education', 'lineage': ['https://openalex.org/I118574687']}], 'countries': ['JP'], 'is_corresponding': False, 'raw_author_name': 'Taisei Kikuchi', 'raw_affiliation_strings': ['Department of Infectious Diseases, Faculty of Medicine, University of Miyazaki, Miyazaki, Japan'], 'affiliations': [{'raw_affiliation_string': 'Department of Infectious Diseases, Faculty of Medicine, University of Miyazaki, Miyazaki, Japan', 'institution_ids': ['https://openalex.org/I118574687']}]}, {'author_position': 'last', 'author': {'id': 'https://openalex.org/A5026975906', 'display_name': 'Ichirô Nakagawa', 'orcid': 'https://orcid.org/0000-0001-6552-1702'}, 'institutions': [{'id': 'https://openalex.org/I22299242', 'display_name': 'Kyoto University', 'ror': 'https://ror.org/02kpeqv85', 'country_code': 'JP', 'type': 'education', 'lineage': ['https://openalex.org/I22299242']}], 'countries': ['JP'], 'is_corresponding': False, 'raw_author_name': 'Ichiro Nakagawa', 'raw_affiliation_strings': ['Department of Microbiology, Graduate School of Medicine, Kyoto University, Kyoto, Japan'], 'affiliations': [{'raw_affiliation_string': 'Department of Microbiology, Graduate School of Medicine, Kyoto University, Kyoto, Japan', 'institution_ids': ['https://openalex.org/I22299242']}]}], 'institution_assertions': [], 'countries_distinct_count': 1, 'institutions_distinct_count': 3, 'corresponding_author_ids': [], 'corresponding_institution_ids': [], 'apc_list': None, 'apc_paid': None, 'fwci': 0.198, 'has_fulltext': True, 'fulltext_origin': 'pdf', 'cited_by_count': 1, 'citation_normalized_percentile': {'value': 0.556147, 'is_in_top_1_percent': False, 'is_in_top_10_percent': False}, 'cited_by_percentile_year': {'min': 62, 'max': 70}, 'biblio': {'volume': '9', 'issue': '42', 'first_page': None, 'last_page': None}, 'is_retracted': False, 'is_paratext': False, 'primary_topic': {'id': 'https://openalex.org/T11153', 'display_name': 'Global Burden of Group A Streptococcal Diseases', 'score': 1.0, 'subfield': {'id': 'https://openalex.org/subfields/2739', 'display_name': 'Public Health, Environmental and Occupational Health'}, 'field': {'id': 'https://openalex.org/fields/27', 'display_name': 'Medicine'}, 'domain': {'id': 'https://openalex.org/domains/4', 'display_name': 'Health Sciences'}}, 'topics': [{'id': 'https://openalex.org/T11153', 'display_name': 'Global Burden of Group A Streptococcal Diseases', 'score': 1.0, 'subfield': {'id': 'https://openalex.org/subfields/2739', 'display_name': 'Public Health, Environmental and Occupational Health'}, 'field': {'id': 'https://openalex.org/fields/27', 'display_name': 'Medicine'}, 'domain': {'id': 'https://openalex.org/domains/4', 'display_name': 'Health Sciences'}}, {'id': 'https://openalex.org/T11551', 'display_name': 'Management and Epidemiology of Infective Endocarditis', 'score': 0.9773, 'subfield': {'id': 'https://openalex.org/subfields/2713', 'display_name': 'Epidemiology'}, 'field': {'id': 'https://openalex.org/fields/27', 'display_name': 'Medicine'}, 'domain': {'id': 'https://openalex.org/domains/4', 'display_name': 'Health Sciences'}}, {'id': 'https://openalex.org/T12824', 'display_name': 'Nosocomial Pathogens: Stenotrophomonas maltophilia and Related Bacteria', 'score': 0.9683, 'subfield': {'id': 'https://openalex.org/subfields/1310', 'display_name': 'Endocrinology'}, 'field': {'id': 'https://openalex.org/fields/13', 'display_name': 'Biochemistry, Genetics and Molecular Biology'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}], 'keywords': [{'id': 'https://openalex.org/keywords/streptococcus-pyogenes', 'display_name': 'Streptococcus pyogenes', 'score': 0.96263397}, {'id': 'https://openalex.org/keywords/human-pathogen', 'display_name': 'Human pathogen', 'score': 0.5774721}, {'id': 'https://openalex.org/keywords/opportunistic-pathogens', 'display_name': 'opportunistic pathogens', 'score': 0.531333}, {'id': 'https://openalex.org/keywords/pathogenesis', 'display_name': 'Pathogenesis', 'score': 0.515354}, {'id': 'https://openalex.org/keywords/group-a', 'display_name': 'Group A', 'score': 0.49488705}], 'concepts': [{'id': 'https://openalex.org/C2779306812', 'wikidata': 'https://www.wikidata.org/wiki/Q131271', 'display_name': 'Streptococcus pyogenes', 'level': 4, 'score': 0.96263397}, {'id': 'https://openalex.org/C10389963', 'wikidata': 'https://www.wikidata.org/wiki/Q848328', 'display_name': 'Serotype', 'level': 2, 'score': 0.7524212}, {'id': 'https://openalex.org/C2778276568', 'wikidata': 'https://www.wikidata.org/wiki/Q190161', 'display_name': 'Streptococcus', 'level': 3, 'score': 0.62260723}, {'id': 'https://openalex.org/C2776460866', 'wikidata': 'https://www.wikidata.org/wiki/Q170065', 'display_name': 'Pathogen', 'level': 2, 'score': 0.5915085}, {'id': 'https://openalex.org/C86803240', 'wikidata': 'https://www.wikidata.org/wiki/Q420', 'display_name': 'Biology', 'level': 0, 'score': 0.5885929}, {'id': 'https://openalex.org/C24527192', 'wikidata': 'https://www.wikidata.org/wiki/Q17149729', 'display_name': 'Human pathogen', 'level': 3, 'score': 0.5774721}, {'id': 'https://openalex.org/C141231307', 'wikidata': 'https://www.wikidata.org/wiki/Q7020', 'display_name': 'Genome', 'level': 3, 'score': 0.54630184}, {'id': 'https://openalex.org/C89423630', 'wikidata': 'https://www.wikidata.org/wiki/Q7193', 'display_name': 'Microbiology', 'level': 1, 'score': 0.5430472}, {'id': 'https://openalex.org/C2780678043', 'wikidata': 'https://www.wikidata.org/wiki/Q743241', 'display_name': 'Group A', 'level': 2, 'score': 0.49488705}, {'id': 'https://openalex.org/C159047783', 'wikidata': 'https://www.wikidata.org/wiki/Q7215', 'display_name': 'Virology', 'level': 1, 'score': 0.4614083}, {'id': 'https://openalex.org/C54355233', 'wikidata': 'https://www.wikidata.org/wiki/Q7162', 'display_name': 'Genetics', 'level': 1, 'score': 0.3126511}, {'id': 'https://openalex.org/C71924100', 'wikidata': 'https://www.wikidata.org/wiki/Q11190', 'display_name': 'Medicine', 'level': 0, 'score': 0.22956994}, {'id': 'https://openalex.org/C104317684', 'wikidata': 'https://www.wikidata.org/wiki/Q7187', 'display_name': 'Gene', 'level': 2, 'score': 0.21694893}, {'id': 'https://openalex.org/C523546767', 'wikidata': 'https://www.wikidata.org/wiki/Q10876', 'display_name': 'Bacteria', 'level': 2, 'score': 0.18785664}, {'id': 'https://openalex.org/C126322002', 'wikidata': 'https://www.wikidata.org/wiki/Q11180', 'display_name': 'Internal medicine', 'level': 1, 'score': 0.0}, {'id': 'https://openalex.org/C2779489039', 'wikidata': 'https://www.wikidata.org/wiki/Q188121', 'display_name': 'Staphylococcus aureus', 'level': 3, 'score': 0.0}], 'mesh': [], 'locations_count': 4, 'locations': [{'is_oa': True, 'landing_page_url': 'https://doi.org/10.1128/mra.01047-20', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S4210232526', 'display_name': 'Microbiology Resource Announcements', 'issn_l': '2576-098X', 'issn': ['2576-098X'], 'is_oa': True, 'is_in_doaj': False, 'is_core': True, 'host_organization': 'https://openalex.org/P4310320263', 'host_organization_name': 'American Society for Microbiology', 'host_organization_lineage': ['https://openalex.org/P4310320263'], 'host_organization_lineage_names': ['American Society for Microbiology'], 'type': 'journal'}, 'license': None, 'license_id': None, 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, {'is_oa': True, 'landing_page_url': 'https://europepmc.org/articles/pmc7561698', 'pdf_url': 'https://europepmc.org/articles/pmc7561698?pdf=render', 'source': {'id': 'https://openalex.org/S4306400806', 'display_name': 'Europe PMC (PubMed Central)', 'issn_l': None, 'issn': None, 'is_oa': True, 'is_in_doaj': False, 'is_core': False, 'host_organization': 'https://openalex.org/I1303153112', 'host_organization_name': 'European Bioinformatics Institute', 'host_organization_lineage': ['https://openalex.org/I1303153112'], 'host_organization_lineage_names': ['European Bioinformatics Institute'], 'type': 'repository'}, 'license': 'cc-by', 'license_id': 'https://openalex.org/licenses/cc-by', 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, {'is_oa': True, 'landing_page_url': 'https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7561698', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S2764455111', 'display_name': 'PubMed Central', 'issn_l': None, 'issn': None, 'is_oa': True, 'is_in_doaj': False, 'is_core': False, 'host_organization': 'https://openalex.org/I1299303238', 'host_organization_name': 'National Institutes of Health', 'host_organization_lineage': ['https://openalex.org/I1299303238'], 'host_organization_lineage_names': ['National Institutes of Health'], 'type': 'repository'}, 'license': None, 'license_id': None, 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, {'is_oa': False, 'landing_page_url': 'https://pubmed.ncbi.nlm.nih.gov/33060279', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S4306525036', 'display_name': 'PubMed', 'issn_l': None, 'issn': None, 'is_oa': False, 'is_in_doaj': False, 'is_core': False, 'host_organization': 'https://openalex.org/I1299303238', 'host_organization_name': 'National Institutes of Health', 'host_organization_lineage': ['https://openalex.org/I1299303238'], 'host_organization_lineage_names': ['National Institutes of Health'], 'type': 'repository'}, 'license': None, 'license_id': None, 'version': None, 'is_accepted': False, 'is_published': False}], 'best_oa_location': {'is_oa': True, 'landing_page_url': 'https://doi.org/10.1128/mra.01047-20', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S4210232526', 'display_name': 'Microbiology Resource Announcements', 'issn_l': '2576-098X', 'issn': ['2576-098X'], 'is_oa': True, 'is_in_doaj': False, 'is_core': True, 'host_organization': 'https://openalex.org/P4310320263', 'host_organization_name': 'American Society for Microbiology', 'host_organization_lineage': ['https://openalex.org/P4310320263'], 'host_organization_lineage_names': ['American Society for Microbiology'], 'type': 'journal'}, 'license': None, 'license_id': None, 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, 'sustainable_development_goals': [], 'grants': [{'funder': 'https://openalex.org/F4320311405', 'funder_display_name': 'Japan Agency for Medical Research and Development', 'award_id': '20fk0108073h0003'}, {'funder': 'https://openalex.org/F4320311405', 'funder_display_name': 'Japan Agency for Medical Research and Development', 'award_id': '19fm0208030h0003'}, {'funder': 'https://openalex.org/F4320311405', 'funder_display_name': 'Japan Agency for Medical Research and Development', 'award_id': '20fk0108130h0401'}, {'funder': 'https://openalex.org/F4320334764', 'funder_display_name': 'Japan Society for the Promotion of Science', 'award_id': '18K07109'}], 'datasets': [], 'versions': [], 'referenced_works_count': 14, 'referenced_works': ['https://openalex.org/W2002694072', 'https://openalex.org/W2004722386', 'https://openalex.org/W2099860226', 'https://openalex.org/W2106128152', 'https://openalex.org/W2131271579', 'https://openalex.org/W2132565683', 'https://openalex.org/W2141516076', 'https://openalex.org/W2414334171', 'https://openalex.org/W2416537772', 'https://openalex.org/W2419334153', 'https://openalex.org/W2766330607', 'https://openalex.org/W2792039676', 'https://openalex.org/W2952167528', 'https://openalex.org/W3043264228'], 'related_works': ['https://openalex.org/W4324309795', 'https://openalex.org/W3004004703', 'https://openalex.org/W2808914253', 'https://openalex.org/W2406809574', 'https://openalex.org/W2388866517', 'https://openalex.org/W2103528224', 'https://openalex.org/W2064385792', 'https://openalex.org/W1695404967', 'https://openalex.org/W1518895438', 'https://openalex.org/W124585725'], 'abstract_inverted_index': {'Streptococcus': [0, 4], 'pyogenes': [1], '(group': [2], 'A': [3], '[GAS])': [5], 'is': [6], 'a': [7], 'major': [8], 'human': [9], 'pathogen': [10], 'that': [11], 'occasionally': [12], 'causes': [13], 'severe': [14, 40], 'and': [15], 'life-threatening': [16], 'invasive': [17, 41], 'diseases.': [18], 'Here,': [19], 'we': [20], 'report': [21], 'the': [22], 'complete': [23], 'genome': [24], 'sequences': [25], 'of': [26, 30], 'four': [27], 'GAS': [28], 'strains': [29], 'three': [31], 'M': [32], 'types,': [33], 'which': [34], 'were': [35], 'isolated': [36], 'from': [37], 'patients': [38], 'with': [39], 'disease': [42], 'in': [43], 'Japan.': [44]}, 'cited_by_api_url': 'https://api.openalex.org/works?filter=cites:W3092826257', 'counts_by_year': [{'year': 2023, 'cited_by_count': 1}], 'updated_date': '2024-09-14T19:13:41.620428', 'created_date': '2020-10-22'}
Publication Information

Video

Basic Information

Access and Citation

AI Researcher Chatbot

Primary Location

Authors

Topics

Keywords

Related Works
