Publication Information

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'https://openalex.org/W2471062504', 'https://openalex.org/W2379775371', 'https://openalex.org/W2322675255', 'https://openalex.org/W2067199117'], 'abstract_inverted_index': {'Protein': [0, 226, 2724], 'modification': [1, 10, 227, 236, 856, 876, 948, 1024, 1203, 1389, 2938, 3540], 'by': [2, 119, 228, 345, 1027, 1835, 2251, 2327, 2397, 2426, 2478, 2498, 2796, 2874, 3098, 3778, 3821, 3936, 4020, 4025], 'lysine': [3, 13, 39, 63, 75, 210, 229, 239, 265, 289, 301, 436, 608, 685, 732, 825, 1026, 1057, 1119, 1163, 1279, 1358, 1434, 1465, 1472, 1686, 2166, 2206, 2235, 2277, 2416, 2567, 2859, 2985, 2992, 3166, 3259, 3539, 3845], 'succinylation': [4, 40, 64, 76, 129, 172, 211, 230, 266, 290, 302, 355, 398, 437, 1028, 1058, 1117, 1198, 1359, 1384, 1435, 1466, 1687, 2095, 2167, 2207, 2278, 2638, 2860, 2986, 3135], 'is': [5, 231, 610, 852, 1199, 1300, 1321, 1385, 1492, 1667, 1749, 1784, 1833, 1922, 1959, 2073, 3601], 'a': [6, 46, 71, 232, 272, 297, 853, 1060, 1200, 1314, 1386, 1493, 1736, 1750, 1985, 2012, 2046, 2074, 2521, 2538, 2594, 2759, 2769, 2854, 2870, 3122, 3465, 3646, 3691, 3766, 3834, 3881], 'newly': [7, 233], 'identified': [8, 79, 234, 305, 1341, 2210, 3094], 'post-translational': [9, 235, 453, 593, 855, 875, 947, 1062], '(PTM)': [11, 237], 'of': [12, 38, 73, 112, 130, 146, 209, 223, 238, 264, 299, 338, 356, 372, 435, 449, 470, 516, 548, 562, 591, 612, 621, 632, 647, 649, 667, 679, 684, 707, 730, 742, 777, 785, 817, 824, 891, 963, 1025, 1056, 1317, 1357, 1433, 1436, 1463, 1496, 1556, 1562, 1575, 1605, 1676, 1712, 1719, 1724, 1739, 1760, 1768, 1798, 1867, 1888, 1902, 1979, 2008, 2096, 2128, 2130, 2165, 2198, 2204, 2229, 2259, 2266, 2276, 2285, 2597, 2773, 2850, 2866, 2917, 2983, 3121, 3134, 3163, 3188, 3206, 3258, 3428, 3471, 3522, 3596, 3644, 3808, 3844, 3914, 3919, 3929, 4012, 4015], 'residues': [14, 240, 686, 2852, 3162], 'and': [15, 70, 99, 106, 139, 152, 182, 187, 212, 241, 296, 325, 332, 365, 378, 408, 413, 438, 472, 518, 553, 560, 578, 628, 701, 734, 830, 893, 965, 1083, 1097, 1118, 1206, 1208, 1281, 1328, 1352, 1362, 1392, 1394, 1468, 1507, 1509, 1631, 1638, 1641, 1653, 1758, 1766, 1778, 1856, 1865, 1900, 1904, 1927, 2050, 2170, 2221, 2240, 2254, 2283, 2299, 2317, 2347, 2383, 2393, 2450, 2474, 2490, 2524, 2566, 2575, 2643, 2690, 2696, 2715, 2788, 2818, 2864, 2884, 2907, 2937, 2956, 2988, 3028, 3290, 3340, 3430, 3438, 3551, 3571, 3598, 3657, 3733, 3762, 3769, 3829, 3864, 3886, 3917, 3933, 3942, 3962, 3997, 4034], 'plays': [16, 242, 1845], 'an': [17, 243, 1846, 1948, 1960, 2054], 'important': [18, 244, 615, 1304, 1668, 1678, 1705, 1847, 1949, 1961], 'role': [19, 245, 1848, 1986, 2047, 2275], 'in': [20, 65, 95, 192, 218, 246, 291, 321, 418, 444, 595, 617, 625, 690, 694, 698, 703, 739, 827, 857, 1036, 1041, 1075, 1086, 1121, 1204, 1307, 1390, 1474, 1582, 1613, 1691, 1708, 1726, 1743, 1755, 1790, 1816, 1849, 1891, 1924, 1929, 1952, 1981, 1987, 2028, 2067, 2132, 2168, 2217, 2279, 2296, 2302, 2311, 2322, 2370, 2418, 2463, 2579, 2645, 2678, 2801, 2994, 3067, 3073, 3136, 3261, 3301, 3443, 3606, 3793, 3889, 3894], 'diverse': [21, 96, 247, 322, 711, 1166, 1332, 2218], 'physiological': [22, 43, 248, 269, 1311, 1333], 'functions,': [23, 249], 'although': [24, 250], 'their': [25, 251, 1469, 2989], 'associated': [26, 252], 'biological': [27, 100, 253, 326, 712, 1326, 1710, 2222, 2264, 2814], 'characteristics': [28, 254], 'are': [29, 93, 190, 255, 319, 416, 550, 1080, 1084, 3892], 'still': [30, 256], 'largely': [31, 257, 1367], 'unknown.': [32, 258], 'Here,': [33, 259, 2182], 'we': [34, 125, 260, 351, 2183], 'investigated': [35, 261], 'the': [36, 42, 128, 137, 144, 147, 177, 185, 198, 207, 220, 262, 268, 354, 363, 370, 373, 403, 411, 424, 433, 446, 557, 589, 613, 629, 633, 644, 650, 677, 731, 740, 783, 941, 1013, 1020, 1091, 1277, 1336, 1355, 1437, 1475, 1671, 1674, 1709, 1717, 1756, 1764, 1801, 1836, 1868, 1953, 2103, 2195, 2227, 2233, 2257, 2263, 2274, 2280, 2294, 2323, 2419, 2664, 2729, 2747, 2777, 2791, 2821, 2828, 2839, 2898, 2904, 2946, 2957, 2995, 3018, 3070, 3093, 3100, 3164, 3171, 3186, 3207, 3214, 3219, 3225, 3302, 3411, 3520, 3537, 3543, 3560, 3816, 3906, 3920, 3926, 3977, 4013, 4016, 4021], 'effects': [37, 263, 2258], 'on': [41, 80, 132, 173, 216, 267, 306, 358, 399, 442, 787, 1898, 2211, 2262, 2399, 2776, 2842, 2967, 3576], 'regulation': [44, 270, 2574], 'within': [45, 271, 1319, 3159], 'well-known': [47, 273], 'fish': [48, 274, 1498], 'pathogen,': [49, 162, 275, 388], 'Aeromonas': [50, 276, 479, 525, 906, 978, 1490, 1512, 1557, 1607], 'hydrophila.': [51, 225, 277, 451, 1714, 2287], 'A': [52, 278, 2202], 'high': [53, 279, 2188, 2595, 3123, 3407], 'affinity': [54, 280, 668], 'purification': [55, 281, 2186], 'method': [56, 282], 'was': [57, 283, 2291, 2300, 2307, 2368, 2461, 2508, 2602, 2726, 2892, 2951, 2962, 3231, 3282, 3419, 3757, 3812, 3860, 3872, 3902], 'used': [58, 284, 458, 504, 1786, 2292, 2923, 3212, 3223, 3283, 3421, 3861, 3873, 3888, 3903, 3947], 'to': [59, 285, 710, 1033, 1302, 1309, 1323, 1578, 1669, 1716, 1792, 2057, 2106, 2193, 2640, 2718, 2807, 2894, 2942, 3017, 3185, 3422, 3563, 3729, 3780, 3815, 3833, 3874, 3904, 3972, 3983, 3989, 4009], 'enrich': [60, 286, 2592], 'peptides': [61, 287, 1776, 2534, 2667, 2706, 2743, 2784, 2921, 2961], 'with': [62, 160, 288, 386, 671, 1211, 1397, 1471, 2187, 2332, 2350, 2443, 2455, 2480, 2493, 2512, 2518, 2670, 2699, 2709, 2758, 2844, 2876, 2915, 2991, 3235, 3336, 3406, 3559, 3580, 3655, 3690, 3759, 3804, 3856, 3866], 'A.': [66, 224, 292, 450, 640, 757, 769, 1240, 1549, 1625, 1713, 1727, 2199, 2286, 2288, 2829, 3033, 3037, 3371, 3379, 3449, 3487, 3499, 3501, 3930, 3985], 'hydrophila': [67, 293, 1491, 1558, 1608, 1626, 1728, 2200, 2289, 2830, 3931, 3986], 'ATCC': [68, 294, 1559, 2831], '7966,': [69, 295], 'total': [72, 298, 2203], '2,174': [74, 300, 2205], 'sites': [77, 141, 189, 303, 367, 415, 2083, 2208, 2939, 3167, 3945], 'were': [78, 116, 304, 342, 2209, 2215, 2238, 2319, 2345, 2395, 2441, 2476, 2491, 2535, 2668, 2707, 2744, 2785, 2816, 2922, 2940, 3096, 3168, 3211, 3222, 3295, 3404, 3441, 3549, 3557, 3791, 3819, 3923, 3946, 3953, 3979, 4023, 4037], '666': [81, 307, 2212], 'proteins': [82, 92, 308, 318, 549, 1702, 2213, 2250, 2475, 2914, 3095, 3548, 3562], 'using': [83, 309, 2135, 2537, 2604, 2728, 2746, 2820, 3170, 3233, 3297, 3410], 'LC-MS/MS.': [84, 310], 'Gene': [85, 311, 895, 967, 3088], 'ontology': [86, 312], 'analysis': [87, 313, 729, 776, 816, 930, 1002, 1432, 1462, 1978, 2003, 2225, 2601, 2982, 3230, 3843], 'indicated': [88, 169, 314, 395, 2226], 'that': [89, 127, 153, 170, 183, 315, 353, 379, 396, 409, 1499, 1685, 1694, 2006, 2214, 2847, 3790], 'these': [90, 154, 316, 380, 3439], 'succinylated': [91, 317, 2239, 2249, 3165, 3538], 'involved': [94, 191, 320, 417, 1085, 1754, 1923, 2216], 'metabolic': [97, 108, 323, 334, 1088, 1167, 1282, 1950, 1962, 2219, 2573, 3138], 'pathways': [98, 324, 1089, 2220, 3433, 3735], 'processes,': [101, 327], 'including': [102, 328, 574, 682, 1090, 1504, 1771], 'translation,': [103, 329], 'protein': [104, 330, 475, 521, 592, 897, 898, 969, 970, 1464, 1740, 2081, 2867, 2984, 3189, 3209, 3285, 3291, 3332, 3391, 3649, 3784], 'export,': [105, 331], 'central': [107, 333, 2234], 'pathways.': [109, 335], 'The': [110, 336, 665, 1648, 1681, 1796, 2305, 2365, 2458, 2506, 2532, 2704, 2782, 2809, 2889, 2927, 3010, 3064, 3276, 3723, 3884, 3898, 3940], 'modifications': [111, 337, 454, 594, 683, 2886, 3583], 'several': [113, 339], 'selected': [114, 340, 2248], 'candidates': [115, 341], 'further': [117, 343, 2255, 2363, 2786, 2925, 3535], 'validated': [118, 344, 2066, 2247], 'Western': [120, 346, 2252, 3572, 3838, 3841], 'blotting.': [121, 347, 3839], 'Using': [122, 348], 'site-directed': [123, 349], 'mutagenesis,': [124, 350], 'observed': [126, 352, 570], 'lysines': [131, 357], 'S-ribosylhomocysteine': [133, 359, 937, 1009, 1839], 'lyase': [134, 360, 1840, 2100], '(LuxS)': [135, 361], 'at': [136, 362, 499, 545, 944, 1016, 2329, 2334, 2339, 2447, 2487, 2503, 2520, 2529, 2675, 2768, 2877, 2918, 3154, 3773, 3798, 3880], 'K23': [138, 186, 364, 412], 'K30': [140, 171, 188, 366, 397, 414], 'positively': [142, 368], 'regulate': [143, 369], 'production': [145, 371, 1797, 1901, 2642], 'quorum': [148, 374, 1850, 1991], 'sensing': [149, 375, 1747], 'autoinducer': [150, 376], 'AI-2,': [151, 377], 'PTMs': [155, 381, 567, 616, 681, 2061], 'ultimately': [156, 382], 'alter': [157, 383], 'its': [158, 213, 384, 439, 622, 735, 1039], 'competitiveness': [159, 385], 'another': [161, 387], 'Vibrio': [163, 389, 1350, 1478, 2998], 'alginolyticus.': [164, 390], 'Moreover,': [165, 391, 1945], 'subsequent': [166, 392], 'metabolomic': [167, 393], 'analyses': [168, 394, 2569], 'LuxS': [174, 217, 400, 443, 1813, 1843, 2007, 2025], 'may': [175, 401, 1703], 'suppress': [176, 402], 'activated': [178, 404, 902, 974, 1954], 'methyl': [179, 405, 477, 523, 903, 975, 1955], 'cycle': [180, 406, 904, 976, 1956], '(AMC)': [181, 407], 'both': [184, 410], 'amino': [193, 419, 653, 3157], 'acid': [194, 420, 878, 880, 940, 950, 952, 1012, 1093, 2702, 3150], 'metabolism.': [195, 421], 'Taken': [196, 422], 'together,': [197, 423], 'results': [199, 425, 2269, 3541], 'from': [200, 426, 2812, 2838, 3192, 3542, 3650, 3925], 'this': [201, 427, 1677, 1744, 2052, 2068, 2260, 2297, 3890], 'study': [202, 428, 2298, 3891], 'provide': [203, 429, 2270, 2570], 'significant': [204, 430, 2271], 'insights': [205, 431, 2272, 2571], 'into': [206, 432, 2273, 2572, 2790, 3956, 3966], 'functions': [208, 434, 713, 1306, 1711, 1742, 2265], 'critical': [214, 440, 1322], 'roles': [215, 441, 738, 1707], 'regulating': [219, 445, 556], 'cellular': [221, 447, 558, 1305, 2281], 'physiology': [222, 448, 559, 2282], 'Most': [452], '(PTMs)': [455], '1The': [456, 502], 'abbreviations': [457, 503], 'are:PTMpost-translational': [459, 505], 'modificationTCAtrichloroacetic': [460, 506], 'acidTFAtrifluoroacetic': [461, 507], 'acidLC-MS/MSliquid': [462, 508], 'chromatography–tandem': [463, 509, 882, 954], 'mass': [464, 467, 510, 513, 883, 887, 955, 959, 2137, 2190, 2735, 2798, 2890], 'spectrometryGC-MSgas': [465, 511], 'chromatography': [466, 512, 886, 915, 958, 987, 2721], 'spectrometryKEGGKyoto': [468, 514], 'Encyclopedia': [469, 515, 890, 962, 3427], 'Genes': [471, 517, 892, 964, 3429], 'GenomesGOGene': [473, 519], 'OntologyPPIprotein': [474, 520], 'interactionCo-IPCo-ImmunoprecipitationAI-2autoinducer-2AMCactivated': [476, 522], 'cycleMASmotile': [478, 524], 'septicemiaLBLuria-BertaniPBSphosphate-buffered': [480, 526], 'salineTBSTris-buffered': [481, 527], 'salineUPLCultra-performance': [482, 528], 'liquid': [483, 529, 881, 914, 953, 986, 2720], 'chromatographyFDRfalse': [484, 530], 'discovery': [485, 531, 678, 917, 989, 1040, 2930], 'rateBSAbovine': [486, 532], 'serum': [487, 533, 920, 992, 3764, 3869], 'albuminCmrchloramphenicol': [488, 534], 'resistanceAmprampicillin': [489, 535], 'resistanceABAgrobacteriumOPLS-DAOrthogonal': [490, 536], 'partial': [491, 537, 928, 1000], 'least-squares-discriminant': [492, 538, 929, 1001], 'analysisQCquality': [493, 539], 'controlOBoligosaccharide': [494, 540], 'bindingSAHS-adenosylhomocysteineSAMS-adenosylmethionineSRHS-ribosylhomocysteineACNacetonitrileFAformic': [495, 541], 'acidOD600the': [496, 542], 'optical': [497, 543, 942, 1014], 'density': [498, 544, 943, 1015, 1794], '600': [500, 546, 945, 1017, 2340], 'nm.': [501, 547, 946, 1018], 'dynamic,': [551], 'reversible,': [552], 'crucial': [554, 3602], 'for': [555, 1342, 1610, 1787, 1803, 1964, 2048, 2079, 2293, 2484, 2500, 2526, 2593, 2897, 2903, 2910, 2924, 2934, 2960, 3092, 3224, 3284, 3343, 3468, 3568, 3603, 3795, 3814, 3837, 3862, 3948, 3974, 3991], 'pathology': [561, 2284], 'various': [563], 'organisms.': [564], 'Several': [565], 'different': [566], 'have': [568, 674, 1303, 1339, 1729, 1734, 2062, 3014], 'been': [569, 1031, 1340, 1731, 2064, 3015], 'among': [571, 1360], 'bacterial': [572, 618, 1078, 1344, 1679, 1698, 1752, 2244, 3754], 'species,': [573, 1345, 1503], 'phosphorylation,': [575], 'glycosylation,': [576], 'nitrosylation,': [577], 'acylation': [579, 609], '(1Cain': [580], 'J.A.': [581, 1194, 1380, 3063], 'Solis': [582], 'N.': [583, 1968, 3059, 3459], 'Cordwell': [584], 'S.J.': [585, 1881], 'Beyond': [586], 'gene': [587, 3908, 3922, 4018], 'expression:': [588], 'impact': [590, 784, 1696], 'bacteria.J.': [596], 'Proteomics.': [597, 745, 833, 861, 1124, 1442, 2429, 2649, 3609], '2014;': [598, 862, 1617, 2430, 3394, 3610], '97:': [599], '265-286Crossref': [600], 'PubMed': [601, 660, 749, 796, 837, 870, 1069, 1133, 1178, 1222, 1293, 1408, 1446, 1485, 1569, 1620, 1660, 1828, 1875, 1909, 1940, 1997, 2040, 2114, 2146, 2433, 2586, 2658, 3005, 3083, 3144, 3200, 3271, 3349, 3397, 3479, 3529, 3613, 3664, 3704, 3745], 'Scopus': [602, 661, 750, 797, 838, 871, 1070, 1134, 1179, 1223, 1294, 1409, 1447, 1486, 1570, 1621, 1661, 1829, 1876, 1910, 1941, 1998, 2041, 2115, 2147, 2178, 2434, 2587, 2659, 3006, 3084, 3145, 3201, 3272, 3350, 3398, 3480, 3530, 3614, 3665, 3705, 3746], '(136)': [603], 'Google': [604, 663, 752, 799, 840, 873, 1072, 1136, 1181, 1225, 1296, 1411, 1449, 1488, 1572, 1623, 1663, 1831, 1878, 1912, 1943, 2000, 2043, 2117, 2149, 2180, 2436, 2589, 2661, 3008, 3086, 3147, 3203, 3274, 3352, 3400, 3482, 3532, 3616, 3667, 3707, 3748], 'Scholar).': [605, 664, 874, 1073, 1297, 1489, 1573, 1624, 1664, 1944, 2001, 2181, 2437, 2590, 2662, 3009, 3087, 3148, 3204, 3275, 3401, 3533, 3749], 'Of': [606, 1781], 'these,': [607, 1782], 'one': [611, 648], 'most': [614, 651], 'species': [619, 3128], 'because': [620, 4011], 'relative': [623], 'freedom': [624], 'ionic': [626], 'coordination': [627, 1759], 'chemical': [630], 'reactivity': [631], 'primary': [634], 'amine': [635], 'group': [636], '(2Azevedo': [637], 'C.': [638, 810, 1145, 1186, 1196, 1236, 1372, 1382, 1456, 2558, 2976, 3253, 3365, 3512, 3591, 3680], 'Saiardi': [639], 'Why': [641], 'always': [642], 'lysine?': [643], 'ongoing': [645], 'tale': [646], 'modified': [652], 'acids.Adv.': [654], 'Biol.': [655, 1065], 'Regul.': [656], '2016;': [657, 793, 2143, 3141], '60:': [658], '144-150Crossref': [659], '(52)': [662], 'use': [666], 'enrichment': [669], 'combined': [670, 2184], 'LC-MS/MS': [672], 'technologies': [673, 2192], 'recently': [675, 1021, 2075], 'advanced': [676], 'novel': [680], 'such': [687, 1346], 'as': [688, 1059, 1347, 2401, 2613, 2853, 2869, 2953, 2964, 3213, 3237, 3299, 3765], 'acetylation': [689, 1473, 2417, 2865, 2993], 'Streptococcus': [691, 743], 'pneumoniae,': [692], 'pupylation': [693, 786], 'Mycobacterium': [695, 779, 2097], 'smegmatis,': [696], 'malonylation': [697, 826, 1120], 'Bacillus': [699, 819, 2133], 'amyloliquefaciens,': [700], 'propionylation': [702, 851], 'Thermus': [704, 858], 'thermophilus,': [705], 'all': [706, 1563, 3344, 4038], 'which': [708, 1733, 1958, 2237, 3818], 'contribute': [709], '(3Liu': [714], 'Y.T.': [715], 'Pan': [716, 1429], 'Y.': [717, 1052, 1115, 1141, 1153, 1161, 1232, 1597, 2126, 2625, 3039, 3057, 3670], 'Lai': [718, 758], 'F.': [719, 773, 2623, 2631, 3625], 'Yin': [720], 'X.F.': [721], 'Ge': [722, 2622], 'R.': [723, 814, 847, 1248, 1517, 1537, 2162, 3318, 3385], 'He': [724, 1229], 'Q.Y.': [725, 3249], 'Sun': [726, 1586, 1918, 2553, 3034, 3109], 'X.': [727, 2409], 'Comprehensive': [728, 774], 'acetylome': [733], 'potential': [736], 'regulatory': [737, 1706], 'virulence': [741, 1899], 'pneumoniae.J.': [744], '2018;': [746, 2650], '176:': [747], '46-55Crossref': [748], '(20)': [751], 'Scholar,': [753, 800, 841, 1137, 1182, 1226, 1412, 1450, 1879, 1913, 2118, 2150, 3353, 3483, 3617, 3668, 3708], '4Fascellaro': [754], 'G.': [755, 2122, 3314, 3373, 3714], 'Petrera': [756], 'Z.W.': [759], 'Nanni': [760], 'P.': [761, 1242, 1974, 2124, 2552, 3320, 3355, 3447, 3507], 'Grossmann': [762], 'J.': [763, 1139, 1256, 1416, 1523, 1525, 1527, 1811, 1871, 1934, 2023, 2548, 2629, 3108, 3369, 3495], 'Burger': [764], 'S.': [765, 849, 1543, 1591, 2160, 3047, 3049, 3316, 3375, 3387, 3489, 3716], 'Biniossek': [766], 'M.L.': [767, 2085], 'Gomez-Auli': [768], 'Schilling': [770], 'O.': [771, 3451, 3676], 'Imkamp': [772], 'proteomic': [775, 3544], 'nitrogen-starved': [778], 'smegmatis': [780], 'deltapup': [781], 'reveals': [782, 822, 1984], 'nitrogen': [788], 'stress': [789], 'response.J.': [790], 'Proteome': [791, 1480, 3000, 3021], 'Res.': [792, 1481, 3001, 3079, 3475, 3525], '15:': [794], '2812-2825Crossref': [795], '(19)': [798], '5Fan': [801], 'B.': [802, 1246, 3461, 3621], 'Li': [803, 805, 1245, 1415, 1455, 1457, 2408, 2624, 2975, 2977, 3362, 3588, 3622, 3638], 'Y.L.': [804, 2560, 3619], 'L.': [806, 1149, 1254, 1539, 3114], 'Peng': [807, 1144, 3246, 3254, 3592, 3620, 3640], 'X.J.': [808, 3247], 'Bu': [809], 'Wu': [811, 1110, 1530, 3626], 'X.Q.': [812], 'Borriss': [813], 'Malonylome': [815], 'rhizobacterium': [818], 'amyloliquefaciens': [820], 'FZB42': [821], 'involvement': [823, 3133], 'polyketide': [828], 'synthesis': [829], 'plant-bacteria': [831], 'interactions.J.': [832], '2017;': [834, 1443, 2111, 2175, 2583, 3080, 3268, 3661, 3742], '154:': [835, 1444], '1-12Crossref': [836], '(33)': [839, 872, 2588, 3146], '6Okanishi': [842], 'H.': [843, 1545, 2152, 3061, 3112, 3367, 3589, 3623], 'Kim': [844, 1540, 2153], 'K.': [845, 1809, 1976, 2021, 2154, 2156, 3491], 'Masui': [846, 2161], 'Kuramitsu': [848, 2159], 'Lysine': [850, 1116, 1197, 1383, 2094, 2637], 'prevalent': [854, 1494], 'thermophilus.Mol.': [859], 'Cell.': [860, 1123, 1169, 2648], '13:': [863, 3477], '2382-2398Abstract': [864], 'Full': [865, 867, 1128, 1130, 1173, 1175, 1217, 1219, 1288, 1290, 1403, 1405, 1823, 1825, 2035, 2037, 2653, 2655, 3699, 3701], 'Text': [866, 868, 1129, 1131, 1174, 1176, 1218, 1220, 1289, 1291, 1404, 1406, 1824, 1826, 2036, 2038, 2654, 2656, 3700, 3702], 'PDF': [869, 1132, 1177, 1221, 1292, 1407, 1827, 2039, 2657, 3703], 'trichloroacetic': [877, 949], 'trifluoroacetic': [879, 951, 2701], 'spectrometry': [884, 888, 956, 960, 2191, 2799], 'gas': [885, 957], 'Kyoto': [889, 961, 3426], 'Genomes': [894, 966, 3431], 'Ontology': [896, 968, 3089], 'interaction': [899, 971, 3473, 3516, 3689], 'Co-Immunoprecipitation': [900, 972], 'autoinducer-2': [901, 973, 1779], 'motile': [905, 977, 1511], 'septicemia': [907, 979, 1513], 'Luria-Bertani': [908, 980], 'phosphate-buffered': [909, 981, 2351], 'saline': [910, 912, 982, 984, 3848], 'Tris-buffered': [911, 983, 3847], 'ultra-performance': [913, 985], 'false': [916, 988, 2929], 'rate': [918, 990, 2772, 2931], 'bovine': [919, 991, 3868], 'albumin': [921, 993, 3870], 'chloramphenicol': [922, 994, 3992], 'resistance': [923, 925, 995, 997, 1858, 2105, 3605], 'ampicillin': [924, 996, 3998], 'Agrobacterium': [926, 998], 'Orthogonal': [927, 999], 'quality': [931, 1003], 'control': [932, 1004], 'oligosaccharide': [933, 1005], 'binding': [934, 1006], 'S-adenosylhomocysteine': [935, 1007], 'S-adenosylmethionine': [936, 1008], 'acetonitrile': [938, 1010], 'formic': [939, 1011], 'Among': [1019], 'described': [1022, 2403, 2615, 2969, 3239, 3578], 'PTMs,': [1023], '(Ksucc)': [1029], 'has': [1030, 1947, 2004, 2011], 'shown': [1032, 2005, 3893], 'be': [1034], 'widespread': [1035], 'bacteria': [1037], 'since': [1038], '2011': [1042], '(7Zhang': [1043], 'Z.H.': [1044, 3255], 'Tan': [1045, 1106, 1146], 'M.J.': [1046, 1107, 1228, 1535, 1585, 3587], 'Xie': [1047, 1150, 1427, 2086, 2092, 2406, 2412], 'Z.Y.': [1048, 1101, 1109, 2411, 2550], 'Dai': [1049, 1102, 1104, 1148], 'L.Z.': [1050, 1105], 'Chen': [1051, 1140, 1423, 1453, 2555, 2557, 2973], 'Zhao': [1053, 1114, 1160, 1916, 3248, 3628], 'Y.M.': [1054, 1111], 'Identification': [1055], 'new': [1061], 'modification.Nat.': [1063], 'Chem.': [1064], '2011;': [1066], '7:': [1067, 1873, 2584, 3269], '58-63Crossref': [1068], '(572)': [1071], 'As': [1074], 'eukaryotic': [1076], 'proteins,': [1077, 3817], 'Ksucc': [1079, 1299, 1318, 1701, 1725], 'evolutionarily': [1081], 'conserved': [1082, 2241], 'core': [1087], 'tricarboxylic': [1092], '(TCA)': [1094], 'cycle,': [1095], 'glycolysis,': [1096], 'pyruvate': [1098], 'metabolisms': [1099, 1693], '(8Xie': [1100], 'J.B.': [1103], 'Cheng': [1108, 2410, 2549], 'Boeke': [1112], 'J.D.': [1113], 'histones.Mol.': [1122], '2012;': [1125], '11:': [1126, 3697], '100-107Abstract': [1127], '(415)': [1135], '9Park': [1138], 'Tishkoff': [1142], 'D.X.': [1143], 'M.': [1147, 1250, 1268, 1424, 1531, 1541, 2120, 3045, 3055, 3324, 3361, 3381, 3497, 3505, 3674, 3678], 'Z.': [1151, 3035], 'Zhang': [1152, 2628, 2630, 3113], 'Zwaans': [1154], 'B.M.': [1155], 'Skinner': [1156], 'M.E.': [1157, 1595], 'Lombard': [1158], 'D.B.': [1159], 'SIRT5-mediated': [1162], 'desuccinylation': [1164], 'impacts': [1165, 1897], 'pathways.Molecular': [1168], '2013;': [1170, 1214, 1285, 1400, 1937], '50:': [1171], '919-930Abstract': [1172], '(621)': [1180], '10Weinert': [1183], 'B.T.': [1184, 1370], 'Scholz': [1185, 1371], 'Wagner': [1187, 1373, 3309], 'S.A.': [1188, 1374], 'Iesmantavicius': [1189, 1375], 'V.': [1190, 1376, 2009], 'Su': [1191, 1377], 'D.': [1192, 1258, 1378, 1529, 1587, 3178, 3357, 3457, 3485, 3493, 3712], 'Daniel': [1193, 1379], 'Choudhary': [1195, 1381], 'frequently': [1201, 1387], 'occurring': [1202, 1388], 'prokaryotes': [1205, 1391], 'eukaryotes': [1207, 1393], 'extensively': [1209, 1395], 'overlaps': [1210, 1396], 'acetylation.Cell': [1212, 1398], 'Reports.': [1213, 1399, 3695], '4:': [1215, 1401], '842-851Abstract': [1216, 1402], '(495)': [1224, 1410], '11Rardin': [1227], 'W.': [1230, 3363, 3718], 'Nishida': [1231], 'Newman': [1233], 'J.C.': [1234], 'Carrico': [1235], 'Danielson': [1237], 'S.R.': [1238], 'Guo': [1239, 2626, 3111], 'Gut': [1241], 'Sahu': [1243], 'A.K.': [1244, 1521], 'Uppala': [1247], 'Fitch': [1249], 'Riiff': [1251], 'T.': [1252, 1915, 2158, 3041, 3110, 3463], 'Zhu': [1253], 'Zhou': [1255, 2090], 'Mulhern': [1257], 'Stevens': [1259], 'R.D.': [1260], 'Ilkayeva': [1261], 'O.R.': [1262], 'Newgard': [1263], 'C.B.': [1264], 'Jacobson': [1265], 'M.P.': [1266], 'Hellerstein': [1267], 'Goetzman': [1269], 'E.S.': [1270], 'Gibson': [1271], 'B.W.': [1272], 'Verdin': [1273], 'E.': [1274, 3720, 3957, 3967], 'SIRT5': [1275], 'regulates': [1276, 1689], 'mitochondrial': [1278], 'succinylome': [1280, 2197, 2568], 'networks.Cell': [1283], 'Metabolism.': [1284], '18:': [1286], '920-933Abstract': [1287], '(440)': [1295], 'Thus,': [1298, 1665], 'likely': [1301], 'response': [1308, 1329, 1791], 'varying': [1310], 'conditions.': [1312, 1334], 'Consequently,': [1313, 1700, 1842], 'comprehensive': [1315], 'identification': [1316, 2164, 2725, 3187], 'organisms': [1320], 'understanding': [1324, 1738], 'essential': [1325], 'activities': [1327, 1762], 'mechanisms': [1330, 1672], 'under': [1331, 3024], 'Although': [1335], 'PTM': [1337, 1741, 2082, 2261], 'profiles': [1338, 1467, 2987], 'some': [1343, 3581], 'Histoplasma': [1348, 1440], 'capsulatum,': [1349], 'parahemolyticus,': [1351], 'Escherichia': [1353, 3607], 'coli,': [1354], 'function': [1356, 1951, 3392], 'prokaryotes,': [1361], 'especially': [1363], 'aquatic': [1364], 'pathogens,': [1365], 'remains': [1366], 'unknown': [1368], '(10Weinert': [1369], '12Xie': [1413], 'L.X.': [1414, 2087, 2407], 'Deng': [1417], 'W.Y.': [1418, 1458, 2978], 'Yu': [1419], 'Z.X.': [1420], 'Fang': [1421], 'W.J.': [1422], 'Liao': [1425], 'W.Q.': [1426], 'J.P.': [1428, 2093, 2413], 'W.H.': [1430], 'Proteomic': [1431], 'human': [1438], 'pathogen': [1439, 1495], 'capsulatum.J.': [1441], '109-117Crossref': [1445], '(18)': [1448], '13Pan': [1451], 'J.Y.': [1452, 2972], 'R.C.': [1454, 2974], 'Ye': [1459, 2979], 'Z.C.': [1460, 2980], 'Global': [1461, 2981], 'overlap': [1470, 2990, 3937], 'marine': [1476, 2996], 'bacterium': [1477, 2997], 'parahemolyticus.J.': [1479, 2999], '2015;': [1482, 3002, 3526, 3696], '14:': [1483, 1821, 2033, 3003], '4309-4318Crossref': [1484, 3004], '(76)': [1487, 3007], 'farmed': [1497], 'can': [1500, 1632, 1695], 'infect': [1501], 'freshwater': [1502], 'catfish,': [1505], 'salmon,': [1506], 'carp,': [1508], 'causes': [1510], '(MAS)': [1514], 'disease': [1515, 1611], '(14Seshadri': [1516], 'Joseph': [1518], 'S.W.': [1519], 'Chopra': [1520], 'Sha': [1522], 'Shaw': [1524], 'Graf': [1526], 'Haft': [1528], 'Ren': [1532], 'Q.': [1533], 'Rosovitz': [1534], 'Madupu': [1536], 'Tallon': [1538], 'Jin': [1542], 'Vuong': [1544], 'Stine': [1546], 'O.C.': [1547], 'Ali': [1548], 'Horneman': [1550], 'A.J.': [1551], 'Heidelberg': [1552], 'J.F.': [1553], 'Genome': [1554], 'sequence': [1555, 3151, 3915], '7966T:': [1560], 'jack': [1561], 'trades.J.': [1564], 'Bacteriol.': [1565, 1993], '2006;': [1566, 1820, 1994, 2032], '188:': [1567, 1995], '8272-8282Crossref': [1568], '(282)': [1571], 'Outbreaks': [1574], 'MAS': [1576], 'lead': [1577], 'considerable': [1579], 'economic': [1580], 'losses': [1581], 'aquaculture': [1583], '(15Hossain': [1584], 'McGarey': [1588], 'D.J.': [1589], 'Wrenn': [1590], 'Alexander': [1592], 'L.M.': [1593, 3245], 'Martino': [1594], 'Xing': [1596, 3242], 'Terhune': [1598], 'J.S.': [1599], 'Liles': [1600], 'M.R.': [1601, 3312], 'An': [1602, 3181], 'Asian': [1603], 'origin': [1604], 'virulent': [1606], 'responsible': [1609], 'epidemics': [1612], 'United': [1614], 'States-farmed': [1615], 'catfish.MBio.': [1616], '5:': [1618, 3389], 'e00848-14Crossref': [1619], '(105)': [1622], 'also': [1627, 3420], 'infects': [1628], 'domestic': [1629], 'animals': [1630], 'contaminate': [1633], 'food': [1634], 'products,': [1635], 'causing': [1636], 'gastrointestinal': [1637], 'extra-intestinal': [1639], 'infections,': [1640], 'even': [1642], 'death': [1643, 3732], '(16Janda': [1644], 'J.M.': [1645], 'Abbott': [1646], 'S.L.': [1647, 2617], 'genus': [1649], 'Aeromonas:': [1650], 'taxonomy,': [1651], 'pathogenicity,': [1652], 'infection.Clin.': [1654], 'Microbiol.': [1655, 1819, 2031], 'Rev.': [1656], '2010;': [1657, 3346], '23:': [1658, 3198], '35-73Crossref': [1659], '(1287)': [1662], 'it': [1666, 1946], 'understand': [1670, 2058], 'underlying': [1673], 'pathogenicity': [1675, 2644], 'pathogen.': [1680, 1745], 'abovementioned': [1682], 'observations': [1683], 'demonstrate': [1684], 'dynamically': [1688], 'enzymes': [1690], 'key': [1692, 1837], 'basal': [1697], 'behaviors.': [1699], 'play': [1704], 'However,': [1715, 2060], 'best': [1718], 'our': [1720, 2303], 'knowledge,': [1721], 'previous': [1722], 'investigations': [1723], 'not': [1730, 1990, 2063], 'conducted,': [1732], 'prevented': [1735], 'complete': [1737], 'Quorum': [1746], '(QS)': [1748], 'universal': [1751], 'behavior': [1753], 'communication': [1757, 1789], 'social': [1761], 'via': [1763, 2070, 3981], 'release': [1765], 'detection': [1767], 'small': [1769], 'molecules,': [1770], 'N-acyl-l-homoserine': [1772], 'lactones': [1773], '(AHL),': [1774], 'autoinducing': [1775], '(AIP),': [1777], '(AI-2).': [1780], 'AI-2': [1783, 1804, 1817, 2029], 'particularly': [1785], 'interspecies': [1788], 'population': [1793], 'changes.': [1795], '4,5-dihydroxy-2,3-pentanedione': [1799], '(DPD)': [1800], 'precursor': [1802], '(17De': [1805, 2017], 'Keersmaecker': [1806, 2018], 'S.C.': [1807, 2019, 3322], 'Sonck': [1808, 2020], 'Vanderleyden': [1810, 2022], 'Let': [1812, 2024], 'speak': [1814, 2026], 'up': [1815, 2027], 'signaling.Trends': [1818, 2030], '114-119Abstract': [1822, 2034], '(122)': [1830, 2042], 'Scholar),': [1832, 2044], 'accomplished': [1834], 'enzyme': [1838, 2053, 2069], '(LuxS).': [1841], 'activity': [1844], 'sensing,': [1851], 'biofilm': [1852], 'formation,': [1853], 'bioluminescence,': [1854], 'virulence,': [1855], 'antibiotic': [1857, 1925, 2421, 3604], '(18Meighen': [1859], 'E.A.': [1860], 'Bacterial': [1861], 'bioluminescence:': [1862], 'organization,': [1863], 'regulation,': [1864], 'application': [1866], 'lux': [1869], 'genes.FASEB': [1870], '1993;': [1872], '1016-1022Crossref': [1874], '(231)': [1877], '19Coulthurst': [1880], 'Kurz': [1882], 'C.L.': [1883], 'Salmond': [1884], 'G.P.': [1885], 'luxS': [1886, 1980, 3907, 3921], 'mutants': [1887, 4007, 4036], 'Serratia': [1889], 'defective': [1890], 'autoinducer-2-dependent': [1892], "'quorum": [1893], "sensing'": [1894], 'show': [1895], 'strain-dependent': [1896], 'carbapenem': [1903], 'prodigiosin.Microbiology.': [1905], '2004;': [1906], '150:': [1907], '1901-1910Crossref': [1908], '(83)': [1911], '20Xue': [1914], 'L.P.': [1917], 'B.L.': [1919], 'LuxS/AI-2': [1920], 'system': [1921], 'susceptibility': [1926], 'autolysis': [1928], 'Staphylococcus': [1930, 1982], 'aureus': [1931, 1983], 'NCTC': [1932], '8325.Int.': [1933], 'Antimicrob.': [1935], 'Agents.': [1936], '41:': [1938], '85-89Crossref': [1939], '(43)': [1942], '(AMC),': [1957], 'pathway': [1963], 'intracellular': [1965], 'methylation': [1966], '(21Doherty': [1967], 'Holden': [1969], 'M.T.': [1970], 'Qazi': [1971], 'S.N.': [1972], 'Williams': [1973], 'Winzer': [1975], 'Functional': [1977], 'metabolism': [1988], 'but': [1989], 'sensing.J.': [1992], '2885-2897Crossref': [1996], '(89)': [1999], 'Motif': [2002, 2224], 'harveyi': [2010], 'tyrosine': [2013], 'kinase': [2014], 'phosphorylation': [2015, 3190], 'site': [2016, 2947], 'suggesting': [2045], 'PTM,': [2049], 'making': [2051], 'intriguing': [2055], 'target': [2056], 'PTMs.': [2059], 'previously': [2065, 2402, 2614, 2968, 3238, 3577], 'experimentation.': [2071], 'Proteomics': [2072], 'developed': [2076], 'powerful': [2077], 'approach': [2078, 3184], 'investigating': [2080], '(22Zhou': [2084], 'Yang': [2088, 2618, 3586], 'Z.Z.': [2089], 'J.H.': [2091], 'tuberculosis': [2098], 'isocitrate': [2099], '(ICL)': [2101], 'fine-tunes': [2102], 'microbial': [2104], 'antibiotics.J.': [2107], 'Biomol.': [2108], 'Struct.': [2109], 'Dyn.': [2110], '35:': [2112], '1030-1041Crossref': [2113], '(15)': [2116], '23Atila': [2119], 'Katselis': [2121], 'Chumala': [2123], 'Luo': [2125], 'Characterization': [2127], 'N-succinylation': [2129], 'L-lysylphosphatidylglycerol': [2131], 'subtilis': [2134], 'tandem': [2136, 2797], 'spectrometry.J.': [2138], 'Am.': [2139], 'Soc.': [2140], 'Mass': [2141], 'Spectrom.': [2142], '27:': [2144], '1606-1613Crossref': [2145], '(10)': [2148], '24Okanishi': [2151], 'Fukui': [2155], 'Yano': [2157], 'Proteome-wide': [2163, 3256], 'thermophilic': [2169], 'mesophilic': [2171], 'bacteria.Biochim.': [2172], 'Biophys.': [2173], 'Acta.': [2174], '1865:': [2176], '232-242Crossref': [2177], '(17)': [2179], 'high-affinity': [2185], 'sensitivity': [2189], 'identify': [2194, 3423], 'entire': [2196], 'ATCC7966.': [2201], 'processes.': [2223], 'presence': [2228, 4014], 'eight': [2230], 'motifs': [2231, 3152, 3191], 'surrounding': [2232], 'residues,': [2236], 'across': [2242], 'other': [2243, 3226], 'species.': [2245], 'We': [2246], 'blotting,': [2253], 'analyzed': [2256, 3169], 'LuxS.': [2267], 'Our': [2268], 'ATCC7966': [2290, 3932], 'experiments': [2295, 3574], 'maintained': [2301], 'laboratory.': [2304], 'strain': [2306], 'routinely': [2308], 'grown': [2309], 'overnight': [2310, 2446, 2674], 'fresh': [2312], 'Luria': [2313], 'Bertani': [2314], '(LB)': [2315], 'medium,': [2316, 2325], 'cultures': [2318], 'diluted': [2320, 2509], '1:100': [2321], 'same': [2324], 'followed': [2326, 2795, 3777], 'incubation': [2328, 2479], '30': [2330], '°C': [2331, 2489, 2677, 3775], 'shaking': [2333], '200': [2335], 'rpm': [2336], 'until': [2337], 'OD': [2338], 'nm': [2341], 'reached': [2342], '1.0.': [2343], 'Cells': [2344], 'harvested': [2346], 'washed': [2348, 2452], 'twice': [2349], 'saline,': [2352], 'PBS': [2353, 3794], '(0.1': [2354], 'm': [2355, 2358, 2374, 2466], 'Na2HPO4,': [2356], '0.15': [2357], 'NaCl,': [2359, 2683], 'pH': [2360, 2472, 2694], '7.5)': [2361], 'before': [2362, 2516], 'use.': [2364], 'cell': [2366, 3731, 3738, 3755], 'pellet': [2367, 2460], 're-suspended': [2369], 'lysis': [2371], 'buffer': [2372, 2464, 2680, 3811], '(8': [2373, 2465], 'urea,': [2375, 2467], '2': [2376], 'mm': [2377, 2380, 2469, 2482, 2495, 2514, 2682, 2685, 2688], 'EDTA,': [2378, 2689], '5': [2379, 2901], 'Dithiothreitol': [2381], '(DTT)': [2382], '1%': [2384, 2700], '(v/v)': [2385, 3853], 'protease': [2386], 'inhibitor': [2387], 'mixture': [2388], '(Calbiochem,': [2389], 'San': [2390, 2739], 'Diego,': [2391], 'CA),': [2392], 'cells': [2394, 3971], 'disrupted': [2396], 'sonication': [2398], 'ice': [2400], '(25Liao': [2404], 'G.J.': [2405], 'Unexpected': [2414], 'extensive': [2415], 'trump-card': [2420], 'producer': [2422], 'Streptomyces': [2423], 'roseosporus': [2424], 'revealed': [2425, 3132], 'proteome-wide': [2427], 'profiling.J.': [2428], '106:': [2431], '260-269Crossref': [2432], '(78)': [2435], 'Proteins': [2438], '(∼10': [2439], 'mg)': [2440], 'precipitated': [2442], '20%': [2444, 4031], 'TCA': [2445], '4': [2448, 2676, 3774, 3796, 3799], '°C,': [2449], 'then': [2451, 2697, 2716, 3770, 3830, 3963], 'three': [2453, 3802], 'times': [2454, 2511], 'ice-cold': [2456], 'acetone.': [2457], 'resultant': [2459], 'dissolved': [2462], '100': [2468, 2513], 'ammonium': [2470], 'bicarbonate,': [2471], '8.0)': [2473, 3850], 'reduced': [2477], '10': [2481, 2895, 3161], 'DTT': [2483], '1': [2485, 2687, 3752], 'h': [2486, 2528, 3797], '37': [2488, 2530], 'alkylated': [2492], '20': [2494, 3156], 'iodoacetamide': [2496], '(IAA)': [2497], 'incubating': [2499], '45': [2501], 'min': [2502, 2761], 'room': [2504], 'temperature.': [2505], 'sample': [2507, 3810], '8': [2510], 'NH4CO3': [2515], 'digestion': [2517], 'trypsin': [2519, 2875], '1:50': [2522], 'ratio': [2523], 'incubated': [2525, 2669, 3758], '16': [2527], '°C.': [2531, 3800], 'tryptic': [2533, 2665], 'dried': [2536], 'CentriVap': [2539], 'Concentrator': [2540], '(Labconco,': [2541], 'Kansas': [2542], 'City,': [2543], 'MO)': [2544], '(26Song': [2545], 'Y.X.': [2546], 'Wang': [2547, 2559, 2561, 2635, 3054, 3117, 3252, 3454, 3590, 3636], 'Gao': [2551, 3634], 'J.X.': [2554], 'X.W.': [2556], 'Z.N.': [2562], 'Quantitative': [2563], 'global': [2564], 'proteome': [2565], 'lymph': [2576], 'node': [2577], 'metastasis': [2578], 'gastric': [2580], 'cancer.Sci.': [2581], 'Rep.': [2582, 3140, 3267], '42053Crossref': [2585], 'To': [2591, 3534], 'abundance': [2596], 'lysine-succinylated': [2598], 'peptides,': [2599, 2936], 'immunoaffinity': [2600], 'performed': [2603, 2727, 3232], 'agarose-conjugated': [2605, 3783], 'anti-succinyllysine': [2606, 2671, 3876], 'antibody': [2607, 3566, 3761, 3877], '(PTM': [2608, 3878], 'Biolabs': [2609], 'Inc.,': [2610], 'Hangzhou,': [2611], 'China),': [2612], '(27Ren': [2616], 'M.K.': [2619], 'Yue': [2620], 'Y.W.': [2621], 'X.X.': [2627, 3241, 3593, 3641], 'Nie': [2632], 'X.,': [2633], 'Y': [2634], 'S.H.': [2636, 3243], 'contributes': [2639], 'aflatoxin': [2641], 'Aspergillus': [2646], 'flavus.Mol.': [2647], '17:': [2651], '457-471Abstract': [2652], '(35)': [2660], 'Briefly,': [2663, 3750], 'digested': [2666, 2873], 'agarose': [2672], 'beads': [2673, 3786], 'NETN': [2679], '(100': [2681, 4001], '50': [2684, 3781, 3806], 'Tris-HCl,': [2686], '0.5%': [2691], 'Nonidet': [2692], 'P-40,': [2693], '8.0),': [2695], 'eluted': [2698, 2783], '(TFA).': [2703], 'enriched': [2705, 3425], 'desalted': [2708], 'C18': [2710, 2751], 'ZipTips': [2711], '(Millipore,': [2712], 'Burlington,': [2713], 'MA)': [2714], 'subjected': [2717], 'high-performance': [2719], '(HPLC)-MS/MS': [2722], 'identification.': [2723], 'ThermoFisher': [2730], 'ScientificTM': [2731], 'Q': [2732, 2802], 'ExactiveTM': [2733, 2803], 'Plus': [2734, 2804], 'spectrometer': [2736], '(ThermoFisher': [2737, 2756], 'Scientific,': [2738], 'Jose,': [2740], 'CA).': [2741], 'Digested': [2742], 'separated': [2745], 'Acclaim': [2748], 'PepMap': [2749], 'RSLC': [2750], 'capillary': [2752], 'reversed-phase': [2753], 'analytical': [2754], 'column': [2755], 'Scientific)': [2757], '40': [2760], '6–80%': [2762], 'ACN/water': [2763], 'gradient': [2764], 'containing': [2765, 2834, 3125, 3851, 4030], '0.1%': [2766, 3852], 'FA': [2767], 'constant': [2770], 'flow': [2771], '300': [2774], 'nL/min': [2775], 'EASY-nLC': [2778], '1000': [2779], 'UPLC': [2780], 'system.': [2781], 'ionized': [2787], 'sprayed': [2789], 'nanospray-ionization': [2792], '(NSI)': [2793], 'source': [2794], '(MS/MS)': [2800], 'coupled': [2805], 'online': [2806], 'UPLC.': [2808], 'fragmentation': [2810], 'data': [2811, 3076, 3194], 'two': [2813], 'replicates': [2815], 'merged': [2817], 'interpreted': [2819], 'MaxQuant': [2822], 'software': [2823, 3280, 3413, 3466], 'package': [2824, 3281, 3414], '(version': [2825], '1.4.1.2)': [2826], 'against': [2827], '7966': [2832], 'database': [2833, 2841, 3023, 3103, 3208, 3216, 3305], '4150': [2835], 'sequences': [2836, 3210], '(downloaded': [2837], 'Uniprot': [2840], '2/1/2018),': [2843], 'search': [2845], 'parameters': [2846], 'included': [2848], 'carbamidomethylation': [2849], 'cysteine': [2851], 'fixed': [2855], 'modification,': [2856, 2872], 'methionine': [2857], 'oxidation,': [2858], '(lysine': [2861], '+': [2862], '100.01604);': [2863], 'N-terminal': [2868], 'variable': [2871], 'least': [2878, 2919, 3155], 'four': [2879], 'missed': [2880], 'cleavages,': [2881], 'five': [2882, 2885], 'charges,': [2883], 'per': [2887], 'peptide.': [2888], 'error': [2891], 'set': [2893, 2941, 2963], 'ppm': [2896, 2902], 'first': [2899, 3954], 'search,': [2900, 2906], 'main': [2905], '0.02': [2908], 'Da': [2909], 'fragment': [2911], 'ions.': [2912], 'Identified': [2913], 'lengths': [2916], 'seven': [2920], 'analysis.': [2926], 'maximum': [2928], '(FDR)': [2932], 'thresholds': [2933], 'protein,': [2935, 3693], '1%.': [2943], 'In': [2944], 'addition,': [2945], 'localization': [2948, 3287, 3334, 3338], 'probability': [2949], 'threshold': [2950], 'specified': [2952], '>': [2954], '0.75': [2955], 'cut-off': [2958], 'score': [2959], '40,': [2965], 'based': [2966, 3575], 'specifications': [2970], '(13Pan': [2971], 'raw': [3011], 'MS': [3012], 'files': [3013], 'submitted': [3016], 'iProx': [3019], '(Integrated': [3020], 'resources)': [3022], 'accession': [3025], 'numbers': [3026], 'IPX0001216000': [3027], 'PXD009778': [3029], '(28Deutsch': [3030], 'E.W.': [3031], 'Csordas': [3032], 'Jarnuczak': [3036], 'Perez-Riverol': [3038], 'Ternent': [3040], 'Campbell': [3042], 'D.S.': [3043], 'Bernal-Llinares': [3044], 'Okuda': [3046], 'Kawano': [3048], 'Moritz': [3050], 'R.L.': [3051], 'Carver': [3052], 'J.J.': [3053], 'Ishihama': [3056], 'Bandeira': [3058], 'Hermjakob': [3060], 'Vizcaino': [3062], 'ProteomeXchange': [3065], 'consortium': [3066], '2017:': [3068], 'supporting': [3069], 'cultural': [3071], 'change': [3072], 'proteomics': [3074], 'public': [3075], 'deposition.Nucleic': [3077], 'Acids': [3078, 3524], '45:': [3081], 'D1100-D1106Crossref': [3082], '(571)': [3085], '(GO)': [3090], 'terms': [3091], 'assessed': [3097], 'querying': [3099], 'UniProt-GO': [3101], 'Annotation': [3102], '(http://www.ebi.ac.uk/GOA)': [3104], '(29Shen': [3105], 'C.J.': [3106], 'Xue': [3107], 'Meng': [3115], 'Y.J.': [3116], 'H.Z.': [3118], 'Succinyl-proteome': [3119], 'profiling': [3120], 'taxol': [3124], 'hybrid': [3126], 'Taxus': [3127], '(Taxus': [3129], 'x': [3130], 'media)': [3131], 'multiple': [3137], 'pathways.Sci.': [3139], '6:': [3142], '21764Crossref': [3143], 'Amino': [3149], 'comprising': [3153], 'acids': [3158], '±': [3160], 'web-based': [3172], 'Motif-X': [3173], 'program': [3174], '(http://motif-x.med.harvard.edu)': [3175], '30S': [3176], 'Schwartz': [3177], 'Gygi': [3179], 'S.P.': [3180], 'iterative': [3182], 'statistical': [3183], 'large-scale': [3193], 'sets.Nat.': [3195], 'Biotechnol.': [3196], '2005;': [3197], '1391-1398Crossref': [3199], '(719)': [3202], 'All': [3205], 'background': [3215], 'parameter,': [3217], 'whereas': [3218], 'default': [3220], 'values': [3221], 'parameters.': [3227], 'Secondary': [3228], 'structure': [3229], 'NetSurfP': [3234], 'settings': [3236], '(31Meng': [3240], 'Perez': [3244], 'Redona': [3250], 'E.D.': [3251], 'znalysis': [3257], '2-hydroxyisobutyrylation': [3260], 'developing': [3262], 'rice': [3263], '(Oryza': [3264], 'sativa)': [3265], 'seeds.Sci.': [3266], '17486Crossref': [3270], '(39)': [3273], 'PSORTb': [3277, 3329], 'version': [3278, 3415], '3.0': [3279], 'subcellular': [3286, 3333], 'prediction': [3288, 3335], '(http://www.psort.org/)': [3289], 'domain': [3292, 3304, 3643], 'functional': [3293], 'annotations': [3294], 'assigned': [3296], 'InterProScan,': [3298], 'implemented': [3300], 'InterPro': [3303], '(http://www.ebi.ac.uk/interpro/)': [3306], '(32Yu': [3307], 'N.Y.': [3308], 'J.R.': [3310], 'Laird': [3311], 'Melli': [3313], 'Rey': [3315], 'Lo': [3317], 'Dao': [3319], 'Sahinalp': [3321], 'Ester': [3323], 'Foster': [3325], 'L.J.': [3326, 3509], 'Brinkman': [3327], 'F.S.': [3328], '3.0:': [3330], 'improved': [3331], 'refined': [3337], 'subcategories': [3339], 'predictive': [3341], 'capabilities': [3342], 'prokaryotes.Bioinformatics.': [3345], '26:': [3347], '1608-1615Crossref': [3348], '(1563)': [3351], '33Jones': [3354], 'Binns': [3356], 'Chang': [3358], 'H.Y.': [3359], 'Fraser': [3360], 'McAnulla': [3364], 'McWilliam': [3366], 'Maslen': [3368], 'Mitchell': [3370], 'Nuka': [3372], 'Pesseat': [3374], 'Quinn': [3376], 'A.F.': [3377], 'Sangrador-Vegas': [3378], 'Scheremetjew': [3380], 'Yong': [3382], 'S.Y.': [3383, 3633, 3637], 'Lopez': [3384], 'Hunter': [3386], 'InterProScan': [3388], 'genome-scale': [3390], 'classification.Bioinformatics.': [3393], '30:': [3395], '1236-1240Crossref': [3396], '(3900)': [3399], 'Protein-protein': [3402], 'interactions': [3403], 'predicted': [3405], 'confidence': [3408], '(0.07)': [3409], 'STRING': [3412, 3418, 3513], '10.1': [3416], '(http://string-db.org).': [3417], 'significantly': [3424], '(KEGG)': [3432], '(p': [3434], 'value': [3435], '<': [3436], '0.05),': [3437], 'correlations': [3440], 'visualized': [3442], 'Cytoscape': [3444], '3.5.1': [3445], '(34Shannon': [3446], 'Markiel': [3448], 'Ozier': [3450], 'Baliga': [3452], 'N.S.': [3453], 'J.T.': [3455], 'Ramage': [3456], 'Amin': [3458], 'Schwikowski': [3460], 'Ideker': [3462], 'Cytoscape:': [3464], 'environment': [3467], 'integrated': [3469, 3518], 'models': [3470], 'biomolecular': [3472], 'networks.Genome': [3474], '2003;': [3476], '2498-2504Crossref': [3478], '(25650)': [3481], '35Szklarczyk': [3484], 'Franceschini': [3486], 'Wyder': [3488], 'Forslund': [3490], 'Heller': [3492], 'Huerta-Cepas': [3494], 'Simonovic': [3496], 'Roth': [3498], 'Santos': [3500], 'Tsafou': [3502], 'K.P.': [3503], 'Kuhn': [3504], 'Bork': [3506], 'Jensen': [3508], 'von': [3510], 'Mering': [3511], 'v10:': [3514], 'protein-protein': [3515], 'networks,': [3517], 'over': [3519], 'tree': [3521], 'life.Nucleic': [3523], '43:': [3527], 'D447-D452Crossref': [3528], '(6757)': [3531], 'validate': [3536], 'analyses,': [3545], 'targeted': [3546], 'candidate': [3547], 'cloned': [3550], 'overexpressed.': [3552], 'Then': [3553, 3976], 'mice': [3554], 'or': [3555], 'rabbits': [3556], 'immunized': [3558], 'expressed': [3561], 'obtain': [3564], 'specific': [3565], 'sera': [3567], 'co-immunoprecipitation': [3569], '(Co-IP)': [3570], 'blotting': [3573], 'methods': [3579], 'slight': [3582], '(36Lin': [3584], 'X.M.': [3585, 3631], 'Decreased': [3594], 'expression': [3595, 3687], 'LamB': [3597], 'Odp1': [3599], 'complex': [3600], 'coli.J.': [3608], '98:': [3611], '244-253Crossref': [3612], '(41)': [3615, 3747], '37Zhang': [3618], 'Yan': [3624], 'H.K.': [3627], 'X.L.': [3629], 'Lin': [3630], 'Min': [3632], 'Y.Y.': [3635, 3639], 'C-terminal': [3642], 'hemocyanin,': [3645], 'major': [3647], 'antimicrobial': [3648], 'litopenaeus': [3651], 'vannamei:': [3652], 'structural': [3653], 'homology': [3654], 'immunoglobulins': [3656], 'molecular': [3658], 'diversity.Front.': [3659], 'Immunol.': [3660], '8:': [3662], '611Crossref': [3663], '(42)': [3666], '38Yamanaka': [3669], 'Faghihi': [3671], 'M.A.': [3672], 'Magistri': [3673], 'Alvarez-Garcia': [3675], 'Lotz': [3677], 'Wahlestedt': [3679], 'Antisense': [3681], 'RNA': [3682], 'controls': [3683], 'LRP1': [3684], 'sense': [3685], 'transcript': [3686], 'through': [3688], 'chromatin-associated': [3692], 'HMGB2.Cell': [3694], '967-976Abstract': [3698], '(66)': [3706], '39Nguyen': [3709], 'D.T.T.': [3710], 'Richter': [3711], 'Michel': [3713], 'Mitschka': [3715], 'Kolanus': [3717], 'Cuevas': [3719], 'Wulczyn': [3721], 'F.G.': [3722], 'ubiquitin': [3724], 'ligase': [3725], 'LIN41/TRIM71': [3726], 'targets': [3727], 'p53': [3728], 'antagonize': [3730], 'differentiation': [3734], 'during': [3736], 'stem': [3737], 'differentiation.Cell': [3739], 'Death': [3740], 'Differentiation.': [3741], '24:': [3743], '1063-1078Crossref': [3744], 'about': [3751], 'ml': [3753], 'lysate': [3756], 'related': [3760], 'pre-immune': [3763], 'negative': [3767], 'control,': [3768], 'gently': [3771], 'vortexed': [3772], 'overnight,': [3776], 'coupling': [3779], 'μl': [3782, 3807], 'G': [3785], '(Beyotime,': [3787], 'Nantong,': [3788], 'China)': [3789], 'prepared': [3792], 'After': [3801], 'washes': [3803], 'PBS,': [3805], 'Laemmli': [3809], 'added': [3813], 'resolved': [3820], 'sodium': [3822], 'dodecyl': [3823], 'sulfate': [3824], 'polyacrylamide': [3825], 'gel': [3826], 'electrophoresis': [3827], '(SDS-PAGE)': [3828], 'electrophoretically': [3831], 'transferred': [3832, 3980], 'PVDF': [3835], 'membrane': [3836], 'For': [3840], 'blot': [3842], 'succinylation,': [3846], '(pH': [3849], 'Tween': [3854], '(TBS-T)': [3855], '5%': [3857], 'skim': [3858], 'milk': [3859], 'blocking': [3863], 'TBS-T': [3865], '3%': [3867], '(BSA)': [3871], 'prepare': [3875], 'Biolabs)': [3879], '1:1,000': [3882], 'dilution.': [3883], 'strains': [3885], 'plasmids': [3887, 3952, 3978], 'supplemental': [3895], 'Table': [3896], 'S6.': [3897], 'suicide': [3899], 'vector': [3900], 'pRE112': [3901], 'generate': [3905], 'deletion': [3909], 'mutant.': [3910], 'Approximately': [3911], '500': [3912], 'bp': [3913], 'upstream': [3916], 'downstream': [3918], 'amplified': [3924], 'chromosomal': [3927], 'DNA': [3928], 'fused': [3934], 'together': [3935], 'extension': [3938], 'PCR.': [3939], 'BamHI': [3941], 'SacI': [3943], 'restriction': [3944], 'plasmid': [3949], 'construction.': [3950], 'Recombinant': [3951], 'transformed': [3955, 3965], 'coli': [3958, 3968], 'MC1061': [3959], '(pir)': [3960, 3970], 'cells,': [3961], 'subsequently': [3964], 'S17–1': [3969], 'select': [3973, 3990], 'Cmr.': [3975], 'conjugation': [3982], 'wild-type': [3984], '(Ampr,100': [3987], 'μg/ml)': [3988, 3996, 4002], 'resistance,': [3993, 3999], 'Cmr': [3994], '(30': [3995], 'Ampr': [4000], 'single-crossover': [4003], 'mutant': [4004], 'colonies.': [4005], 'Double-crossover': [4006], 'resistant': [4008], 'sucrose': [4010], 'sacB': [4017], 'carried': [4019], 'plasmid,': [4022], 'isolated': [4024], 'plating': [4026], 'onto': [4027], 'LB-sucrose': [4028], 'agar': [4029], 'sucrose.': [4032], 'Single-': [4033], 'double-crossover': [4035], 'confirmed': [4039], 'b': [4040]}, 'cited_by_api_url': 'https://api.openalex.org/works?filter=cites:W2897688654', 'counts_by_year': [{'year': 2024, 'cited_by_count': 13}, {'year': 2023, 'cited_by_count': 3}, {'year': 2022, 'cited_by_count': 10}, {'year': 2021, 'cited_by_count': 9}, {'year': 2020, 'cited_by_count': 8}, {'year': 2019, 'cited_by_count': 14}], 'updated_date': '2025-01-03T12:33:43.008698', 'created_date': '2018-10-26'}