Deep Learning for Plant Stress Phenotyping: Trends and Future Perspectives

Name: Work Video:
Duration: 3 min 30 s
Asheesh K. Singh; Baskar Ganapathysubramanian; Soumik Sarkar; Arti Singh
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'phenomena.': [133, 247], 'These': [134, 248, 683, 708, 1325, 2370], 'tools': [135, 183, 213, 249, 297, 327, 464, 484, 1234, 1326, 1396, 1796, 1830], 'are': [136, 250, 1120, 1185, 1452, 1500, 1577, 1672, 1892, 1904, 2004, 2033, 2085, 2111, 2636, 2654, 2687, 2706, 3022], 'increasingly': [137, 251, 720], 'being': [138, 252, 743, 1433], 'used': [139, 253, 764, 1453, 2034, 2073, 2198, 2214], 'by': [140, 254, 451, 581, 901, 908, 939, 964, 971, 1134, 1154, 1172, 1197, 1208, 1218, 1334, 1906, 2019, 2082, 2274, 2292, 3527, 4015, 4079, 4096], 'science': [143, 257, 389, 554, 1819], 'community': [144, 258, 390, 555, 1820, 2874], 'make': [146, 260, 1376], 'sense': [147, 261], 'datasets': [151, 265, 436, 1549, 2389, 2635, 3990], 'now': [152, 266, 1179], 'regularly': [153, 267], 'collected': [154, 268], 'via': [155, 269, 1626, 2119, 2658, 2700], 'high-throughput': [156, 270, 345, 356, 413, 620, 663, 1462], 'genotyping.': [159, 273], 'We': [160, 176, 274, 290, 446, 566, 1814, 1841, 2600, 4104], 'review': [161, 275, 450, 538, 569, 1787], 'recent': [162, 276, 1485, 1804], 'work': [163, 277, 1645], 'where': [164, 278, 719, 761, 1391, 1864, 1898], 'principles': [166, 280], 'have': [167, 281, 486, 1563, 1799, 2196, 4061], 'been': [168, 282, 2197, 2883], 'utilized': [169, 283], 'comparative': [179, 293], 'against': [184, 298], 'other': [185, 299, 1751], 'existing': [186, 300], 'techniques,': [187, 301], 'respect': [189, 303], 'decision': [191, 305, 1953, 2056], 'accuracy,': [192, 306, 1077], 'size': [194, 308], 'requirement,': [195, 309], 'applicability': [197, 311, 1791], 'various': [199, 313, 400, 404, 1233, 1911, 2735, 2889, 4016], 'scenarios.': [200, 314], 'Finally,': [201, 315], 'we': [202, 316, 332, 559, 1437, 2231], 'outline': [203, 317], 'several': [204, 318, 488], 'avenues': [205, 319], 'research': [207, 321, 631], 'leveraging': [208, 322, 2659, 3032], 'current': [209, 323, 2646], 'science.': [216, 330], 'Recently,': [331], 'reported': [333, 830, 931], 'possibilities': 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3416, 3537, 3590, 3618, 3671, 3727, 3770, 3820, 3845, 3869], '(500)': [373, 680, 1479], 'Google': [374, 681, 919, 982, 1090, 1266, 1293, 1323, 1480, 2251, 2333, 2451, 2525, 3128, 3166, 3266, 3385, 3418, 3539, 3592, 3620, 3673, 3729, 3772, 3822, 3847, 3871], 'Scholar].': [375, 682, 920, 983, 1091, 1324, 2252, 4103], 'With': [376], 'rapidly': [378, 459], 'increasing': [379, 418], 'sophistication,': [380], 'capability,': [381], 'miniaturization': [383], 'imaging': [385, 586, 635], 'sensors,': [386], 'is': [391, 472, 503, 508, 539, 579, 587, 723, 742, 757, 763, 780, 817, 829, 865, 923, 930, 987, 1013, 1127, 1143, 1169, 1178, 1390, 1418, 1544, 1616, 1788, 1850, 1965, 2058, 2072, 2641, 2727, 2752, 2869, 3038, 3043, 3896, 3904, 3935, 4002, 4006], 'facing': [392], 'deluge': [395], 'images': [398, 1203, 1375, 3711], 'under': [399, 403, 1052, 2900], 'environments': [401], 'stresses': [405], 'abiotic).': [408], 'This': [409, 471, 502, 578, 623, 1000, 1168, 1227, 1389, 2289], 'ability': [410, 1429], 'perform': [412], 'resulted': [416, 625], 'interest': [419, 432], 'automated': [421, 495, 499, 1188, 1214], 'approaches': [422, 1699, 3954], 'extract': [424], 'features': [425, 1506, 1903, 2080, 2097, 2110, 2219], '(i.e.,': [426, 1360, 1446, 1674, 1683, 1737, 3931], 'symptoms': [427, 774, 998, 3763], 'organs)': [429], 'physiological': [431], 'from': [433, 530, 725, 1410, 1509, 1531, 1676, 1685, 1729, 1871, 2711, 2731, 3608, 3661, 3880, 3983, 4025, 4052], 'these': [434, 1183, 2410], 'intent': [439], 'identifying': [441, 739], 'quantifying': [443, 1312], 'stresses.': [445], 'complement': [447], 'our': [448, 564, 568, 2608], 'earlier': [449], 'very': [456, 2357, 2387, 3988, 4008], 'promising': [457, 1487], 'advancing': [460], 'ML': [463, 516, 521, 639, 762, 1225, 1392, 1406, 1417, 1440, 1558, 1561, 1588, 1667, 1854, 2418, 2622, 2748, 2766, 3969], 'this': [466, 537, 1607, 1663, 1786, 2075], 'work:': [467], 'deep': [468, 1754, 1764, 1999, 2300, 2486, 2535, 2568, 2917, 2967, 2998, 3082, 3119, 3370, 3405, 3612, 3802, 3838, 4076, 4093], '(DL).': [470], 'especially': [473, 1394], 'important': [474], 'topical': [476], 'due': [477], 'remarkable': [480], 'advances': [481, 1825, 1838], 'that': [485, 507, 551, 573, 584, 736, 1182, 1191, 1425, 1442, 1451, 1490, 1543, 1617, 1662, 1816, 1908, 1926, 2089, 2302, 2395, 2753, 2881, 3889, 4113], 'transformed': [487, 1942, 1966], 'disciplines,': [489], 'consumer': [491, 2618], 'analytics,': [492], 'autonomous': [493], 'vehicles,': [494], 'medical': [496], 'diagnostics,': [497], 'financial': [500], 'management.': [501], 'also': [504, 4074], 'an': [505, 1162, 1532, 1557, 1620, 1958, 1962, 1990, 2104, 2225, 2242, 2681, 2788, 2863, 3395], 'area': [506, 934, 1258], 'quickly': [509], 'becoming': [510, 2655], 'workhorse': [512], 'strategy': [513, 1033], 'most': [515, 2421], '(Figure': [518, 1513, 1887, 2777], '1': [519], 'compares': [520], 'papers': [522, 525], 'over': [526], '10-year': [528], 'period': [529, 839], '2008': [531], '2018).': [533], 'Our': [534, 1783], 'goal': [535, 779], 'comprehensive': [543, 4110], 'overview,': [544], 'infer': [545], 'trends,': [546], 'identify': [548, 2729], 'outstanding': [549], 'problems': [550, 652, 1668, 1809, 2893], 'could': [556, 2303], 'pursue': [557], 'integrate': [560], 'concepts': [562, 643], 'into': [563, 713, 791], 'domain.': [565], 'limit': [567], 'primarily': [574, 2349], 'utilize': [575], 'data.': [577], 'motivated': [580], 'fact': [583], 'relatively': [588], 'cheap;': [589], 'can': [590, 597, 644, 1777, 1821, 2664, 2858, 3981], 'be': [591, 598, 645, 2407, 2665, 2859, 2886], 'deployed': [592, 646], 'scalable': [595, 2174], 'manner;': [596], 'easily': [599], 'integrated': [600], 'manual,': [602], 'ground,': [603], 'aerial': [605, 3663], 'platforms;': [606], 'requires': [608, 3890], 'potentially': [609], 'least': [611], 'technical': [612], 'expertise': [613], 'deploy': [615], 'off-the-shelf': [617], 'components': [618, 1746], 'veritable': [628], 'explosion': [629], 'activities': [632], 'using': [633, 1224, 1255, 1285, 1691, 1894, 1967, 3611, 3837], 'applications.': [638], '(and': [640, 1393], 'hence': [641], 'DL)': [642, 1395], 'four': [648, 697, 709], 'broad': [649], 'categories': [650, 684, 698, 710], 'form': [685, 2613, 3947], 'part': [686], 'so-called': [689], "'ICQP'": [690], 'paradigm': [691], 'acronym': [694], 'representing': [695], '(i)': [699, 1039, 2354], '(ii)': [701, 1157, 2360], '(iii)': [703, 2366], '(iv)': [706], 'prediction.': [707], 'naturally': [711], 'fall': [712], 'continuum': [715], 'feature': [717, 1220, 1404, 1517, 1540, 1568, 1583, 1623, 1658, 1702, 1735, 1774, 2760], 'extraction': [718, 1221, 1569, 1584, 1624, 1659, 1703, 1736, 1775, 2761], 'more': [721, 805, 925, 1484, 2108], 'information': [722], 'inferred': [724], 'given': [727, 2018], 'image.': [728], 'Identification': [729], 'refers': [730, 1519], 'detection': [732, 1275, 3256], 'specific': [734, 2631], 'stress,': [735, 809], 'is,': [737, 2090], 'simply': [738], 'which': [740, 828, 1044, 1856, 2385, 2462, 3021], 'exhibited,': [744], 'example,': [746, 1708, 1956], 'sudden': [747, 2697, 3788], 'death': [748, 2698, 3789], 'syndrome': [749, 3403], 'soybean': [751, 2693], 'or': [752, 789, 799, 842, 875, 891, 950, 1151, 1507, 1535, 1681, 1762, 1951, 2639, 3566], 'rust': [753, 3500], 'wheat.': [755], 'Classification': [756], 'next': [759, 1842, 2254, 3027], 'step,': [760], 'classify': [766], 'basis': [771], 'signatures.': [776], 'Here,': [777, 1436], 'place': [782], 'visual': [784], '(leaf,': [786], 'plant,': [787], 'canopy,': [788], 'row)': [790], 'distinct': [793], 'class': [795, 1852, 1976], '(e.g.,': [796, 1200, 1527, 2691], 'low-,': [797], 'medium-,': [798], 'high-stress': [800], 'categories).': [801], 'Quantification': [802], 'involves': [803, 1589, 1619], 'quantitative': [806], 'characterization': [807], 'such': [810, 1638, 1773, 1985, 2133, 2585, 2605, 2695, 2737, 2795, 2904, 3033, 3894, 3994, 4021, 4038], 'incidence': [812, 816, 864], 'severity.': [814], 'Disease': [815, 921, 1065], 'defined': [818, 1419], 'rate': [821], 'new': [823, 1246, 1308, 3877], 'cases': [824, 835], 'disease,': [827, 3134, 3137], 'number': [833, 877, 885, 2027, 2835, 2843], 'occurring': [836], 'within': [837, 2767], 'time': [841, 845, 850], 'any': [844, 1494, 1772], 'instant': [846], '(generally': [847], 'maximum': [852], 'disease': [853, 863, 897, 941, 960, 1084, 1118, 1253, 1274, 1314, 1330, 2694, 3156, 3255, 3375, 3640, 3710, 3834], 'expression).': [854], 'In': [855, 1024, 1515, 1606, 1935, 2177, 2429, 2492, 2539, 2673, 2921, 3460], 'pathology,': [857], 'common': [859, 2870, 3209, 3298], 'way': [860, 4047], 'describe': [862], 'percentage': [867], 'diseased': [869, 879, 1049, 2685], 'leaves': [870], 'single': [873], 'out': [881], 'total': [884], 'field': [890, 3609], 'plot': [892, 1150], '[2Bock': [893, 956], 'C.': [894, 957, 2979, 3598, 4089], 'al.Plant': [896, 959], 'severity': [898, 922, 961, 1254, 3835], 'estimated': [899, 962], 'visually,': [900, 963], 'photography': [903, 966], 'analysis,': [906, 969], 'hyperspectral': [909, 972], 'imaging.Crit.': [910, 973], 'Rev.': [911, 974], '2010;': [914, 977, 2519], '29:': [915, 978], '59-107Crossref': [916, 979], '(518)': [918, 981], 'detailed': [926], 'quantification': [927], 'measure': [928], 'tissue': [937], 'affected': [938], '(commonly': [942], 'presented': [943], 'percentage)': [946], 'leaf': [949, 3087, 3104, 3115, 3139, 3200, 3207, 3212, 3228, 3230, 3233, 3236, 3243, 3295, 3302, 3311, 3334, 3346, 3350, 3364, 3489, 3504, 3528, 3556, 3559, 3596, 3604, 3630, 3632, 3676, 3684, 3693, 3702, 3734, 3746, 3783], 'entire': [953], 'canopy': [955], 'The': [984, 1111, 2078, 2202, 2253, 3029], 'last': [985], 'category': [986], 'ahead': [992], 'time,': [994], 'before': [995, 1550], 'visible': [996], 'appear.': [999], 'substantial': [1002], 'implications': [1003], 'timely': [1006], 'cost-effective': [1008], 'control': [1009], 'one': [1014, 1528, 1609, 2768, 3959, 4112], 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3338, 3351, 3358, 3677, 3685, 3741, 3745, 3784, 3787], 'mosaic,': [3106, 3222], 'rust,': [3107, 3192, 3210, 3289, 3299, 3629], 'brown': [3108, 3132, 3138, 3199, 3786], 'spot68Liu': [3109], 'B.': [3110], 'al.Identification': [3112], 'apple': [3114, 3188, 3191, 3284, 3287, 3495], 'based': [3117, 3522], 'networks.Symmetry.': [3122], '10:': [3124], '11Crossref': [3125], '(366)': [3127], 'ScholarIdentificationInception-v3,': [3129], 'ImageNetCassavaManualBiotic': [3130], 'stressCassava': [3131], 'streak': [3133], 'cassava': [3135, 3141, 3145, 3155, 3202], 'mosaic': [3136, 3241, 3360, 3426, 3433, 3440, 3444, 3690, 3738], 'green': [3142, 3203, 3442], 'mite': [3143, 3147], 'damage,': [3144], 'red': [3146], 'damage69Ramcharan': [3148], 'image-based': [3154, 3373, 3716, 3832], 'detection.Front.': [3157, 3376], '8:': [3161, 3413], '1852Crossref': [3162], '(307)': [3165], 'ALexNetOWTBn,': [3168], 'Overfeat,': [3170], 'VGGApple,': [3171], 'banana,': [3172], 'blueberry,': [3173, 3269], 'cabbage,': 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'two-spotted': [3353, 3686], 'yellow': [3363, 3421, 3425, 3701, 3733], 'curl': [3365, 3703, 3735], 'virus53Mohanty': [3366], 'S.P.': [3367], 'al.Using': [3369], '7:': [3380], '1419https://doi.org/10.3389/fpls.2016.01419Crossref': [3381], '(1595)': [3384], 'ScholarIdentificationModified': [3386], 'LeNetOliveManualBiotic': [3387], 'stressOlive': [3388], 'quick': [3389, 3401], 'decline': [3390, 3402], 'syndrome71Cruz': [3391], 'A.C.': [3392], 'al.X-FIDO:': [3394], 'effective': [3396], 'detecting': [3399], 'olive': [3400], 'fusion.Front.': [3409], '1741Crossref': [3414], '(107)': [3417], 'ScholarIdentificationCNNCucumberManualBiotic': [3419], 'stressMelon': [3420], 'spot': [3422, 3437, 3505, 3696], 'zucchini': [3424], 'cucurbit': [3428], 'chlorotic': [3429], 'yellows': [3430], 'papaya': [3435], 'ring': [3436], 'watermelon': [3439], 'mottle': [3443], 'virus72Fujita,': [3445], 'E.,': [3446], 'Basic': [3450], 'investigation': [3451], 'robust': [3454, 3573], 'practical': [3456], 'diagnostic': [3458], 'system.': [3459], '2016': [3461, 3534], '15th': [3462], 'Applications': [3470], '(ICMLA),': [3471], '989–992,': [3473], 'ScholarIdentificationCaffeNet,': [3475], 'ImageNetPear,': [3476], 'apple,': [3479], 'grapevineManualBiotic': [3480], 'stressPorosity': [3481], '(pear,': [3482], 'peach),': [3484], 'mildew': [3486, 3498, 3512, 3515], '(peach),': [3487], 'curl,': [3490], 'fire': [3491], 'blight': [3492, 3679], '(apple,': [3493, 3501], 'pear),': [3494, 3502], '(apple),': [3499], 'grey': [3503], '(pear),': [3506], 'wilt': [3507, 3658], '(grapevine),': [3508, 3510, 3513], 'mites': [3509], '(grapevine)88Sladojevic': [3516], 'S.': [3517, 3798, 3814, 4087], 'classification.Comput.': [3530], 'Intell.': [3531, 3766, 3840], 'Neurosci.': [3532, 3841], '(3289801)Crossref': [3535], '(856)': [3538], 'ZFNet,': [3541], 'VGG-16,': [3542], 'ResNet-50,': [3544], 'ResNet-101,': [3545], 'ResNetXt-101,': [3546], 'Faster': [3547], 'RCNN,': [3548], 'R-FCN,': [3549], 'SSDTomatoManualBiotic': [3550], 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'diagnosis': [3641, 3720], 'system.CoRR.': [3642], '(abs/1710.08299)Google': [3644], 'ScholarIdentificationVGG-A,': [3645], 'CNNRadishUAVBiotic': [3646], 'stressFusarium': [3647], 'wilt74Ha': [3648], 'J.G.': [3649], 'classifying': [3656], 'Fusarium': [3657], 'radish': [3660], 'unmanned': [3662], 'vehicles.J.': [3664], 'Appl.': [3665], 'Remote': [3666], 'Sens.': [3667], '11:': [3669], '042621Crossref': [3670], '(65)': [3672], 'ScholarIdentificationSCRNNTomatoManualBiotic': [3674], 'tomato,': [3680, 3698], 'virus.70Yamamoto': [3704], 'al.Super-resolution': [3707], 'acceleration': [3714], 'vigor': [3719], 'agriculture.Sensors': [3722], '(Basel).': [3723], '17E2557Crossref': [3725], '(59)': [3728], 'ScholarClassificationAlexNet,': [3730], 'GoogLeNetTomatoManualBiotic': [3731], 'stressTomato': [3732], 'spot77Brahimi': [3753], 'M.': [3754], 'diseases:': [3760], 'visualization.Appl.': [3764], 'Artif.': [3765], '31:': [3768], '299-315Crossref': [3769], '(365)': [3771, 3846], 'ScholarIdentification,': [3773], 'quantificationAlexNetSoybeanManualBiotic': [3775], 'pustule,': [3781], 'syndrome,': [3790], 'iron': [3791], 'deficiency': [3792], 'chlorosis,': [3793], 'potassium': [3794], 'herbicide': [3796], 'injury81Ghosal': [3797], 'explainable': [3801], 'framework': [3805], 'phenotyping.Proc.': [3809], 'Natl.': [3810], 'Acad.': [3811], 'U.': [3813], '115:': [3817], '4613-4618Crossref': [3818], '(263)': [3821], 'ScholarQuantificationVGG-16,': [3823], 'VGG-19,': [3824], 'Inception-v3,': [3825], 'ResNet50AppleManualBiotic': [3826], 'stressBlack': [3827], 'rot78Wang': [3828], 'G.': [3829], 'al.Automatic': [3831], 'estimation': [3836], 'learning.Comput.': [3839], '2017': [3843], '(2917536)Crossref': [3844], 'ScholarPredictionDNNTomatoManualAbiotic': [3848], 'stressWater': [3849], 'stress84Kaneda': [3850], 'al.Multi-modal': [3853], 'sliding': [3854], 'window-based': [3855], 'regression': [3858], 'predicting': [3860], 'water': [3862], 'stress.Knowl.': [3863], 'Based': [3864], 'Syst.': [3865], '134:': [3867], '135-148Crossref': [3868], '(34)': [3870], 'Scholar': [3872], 'Open': [3873], 'table': [3874], 'tab': [3878], 'Apart': [3879, 4024], 'hyperparameter': [3881], 'choices': [3882], 'training,': [3885], 'another': [3886], 'aspect': [3888], 'attention': [3891], 'issue': [3898], 'overfitting,': [3900, 4034], 'excessive': [3906], 'details': [3907], 'about': [3908], 'modeling': [3914], 'noise': [3916], 'data),': [3919], 'thus': [3920], 'leading': [3921], 'poor': [3924], 'unseen': [3928], 'test': [3929], 'deployed).': [3936], 'Before': [3937], 'resurgence': [3939], 'artificial': [3941], '(ANNs)': [3944], 'models,': [3950], 'prevent': [3956, 4049], 'overfitting': [3957, 4065], 'reasons': [3963], 'ANNs': [3964], 'became': [3965], 'unpopular': [3966], 'community.': [3970], 'Although': [3971], 'millions': [3977], 'learnable': [3979], 'suffer': [3982], 'issues,': [3985], 'substantially': [3992], 'reduced': [3993], 'if': [3997], 'sufficiently': [3999], 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'cited_by_count': 95}, {'year': 2023, 'cited_by_count': 91}, {'year': 2022, 'cited_by_count': 101}, {'year': 2021, 'cited_by_count': 99}, {'year': 2020, 'cited_by_count': 74}, {'year': 2019, 'cited_by_count': 37}, {'year': 2018, 'cited_by_count': 5}], 'updated_date': '2024-12-30T15:47:09.512301', 'created_date': '2018-08-22'}
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