Publication Information

{'id': 'https://openalex.org/W2513861476', 'doi': 'https://doi.org/10.1186/s13073-016-0344-6', 'title': 'Illuminating uveitis: metagenomic deep sequencing identifies common and rare pathogens', 'display_name': 'Illuminating uveitis: metagenomic deep sequencing identifies common and rare pathogens', 'publication_year': 2016, 'publication_date': '2016-08-25', 'ids': {'openalex': 'https://openalex.org/W2513861476', 'doi': 'https://doi.org/10.1186/s13073-016-0344-6', 'mag': '2513861476', 'pmid': 'https://pubmed.ncbi.nlm.nih.gov/27562436', 'pmcid': 'https://www.ncbi.nlm.nih.gov/pmc/articles/4997733'}, 'language': 'en', 'primary_location': {'is_oa': True, 'landing_page_url': 'https://doi.org/10.1186/s13073-016-0344-6', 'pdf_url': 'https://genomemedicine.biomedcentral.com/track/pdf/10.1186/s13073-016-0344-6', 'source': {'id': 'https://openalex.org/S149201819', 'display_name': 'Genome Medicine', 'issn_l': '1756-994X', 'issn': ['1756-994X'], 'is_oa': True, 'is_in_doaj': True, 'is_core': True, 'host_organization': 'https://openalex.org/P4310320256', 'host_organization_name': 'BioMed Central', 'host_organization_lineage': ['https://openalex.org/P4310319965', 'https://openalex.org/P4310320256'], 'host_organization_lineage_names': ['Springer Nature', 'BioMed Central'], 'type': 'journal'}, 'license': 'cc-by', 'license_id': 'https://openalex.org/licenses/cc-by', 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, 'type': 'article', 'type_crossref': 'journal-article', 'indexed_in': ['crossref', 'pubmed'], 'open_access': {'is_oa': True, 'oa_status': 'gold', 'oa_url': 'https://genomemedicine.biomedcentral.com/track/pdf/10.1186/s13073-016-0344-6', 'any_repository_has_fulltext': True}, 'authorships': [{'author_position': 'first', 'author': {'id': 'https://openalex.org/A5049197682', 'display_name': 'Thuy Doan', 'orcid': 'https://orcid.org/0000-0003-2733-8370'}, 'institutions': [{'id': 'https://openalex.org/I2802636490', 'display_name': 'San Francisco Foundation', 'ror': 'https://ror.org/046jh9k27', 'country_code': 'US', 'type': 'nonprofit', 'lineage': ['https://openalex.org/I2802636490']}, {'id': 'https://openalex.org/I180670191', 'display_name': 'University of California, San Francisco', 'ror': 'https://ror.org/043mz5j54', 'country_code': 'US', 'type': 'education', 'lineage': ['https://openalex.org/I180670191']}], 'countries': ['US'], 'is_corresponding': False, 'raw_author_name': 'Thuy Doan', 'raw_affiliation_strings': ['Department of Ophthalmology, University of California San Francisco, San Francisco, CA, USA', 'Francis I. Proctor Foundation, University of California San Francisco, San Francisco, CA, USA'], 'affiliations': [{'raw_affiliation_string': 'Francis I. Proctor Foundation, University of California San Francisco, San Francisco, CA, USA', 'institution_ids': ['https://openalex.org/I2802636490', 'https://openalex.org/I180670191']}, {'raw_affiliation_string': 'Department of Ophthalmology, University of California San Francisco, San Francisco, CA, USA', 'institution_ids': ['https://openalex.org/I180670191']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5022846737', 'display_name': 'Michael R. Wilson', 'orcid': 'https://orcid.org/0000-0002-8705-5084'}, 'institutions': [{'id': 'https://openalex.org/I180670191', 'display_name': 'University of California, San Francisco', 'ror': 'https://ror.org/043mz5j54', 'country_code': 'US', 'type': 'education', 'lineage': ['https://openalex.org/I180670191']}], 'countries': ['US'], 'is_corresponding': False, 'raw_author_name': 'Michael R. Wilson', 'raw_affiliation_strings': ['Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA, USA', 'Department of Neurology, University of California San Francisco, San Francisco, CA, USA'], 'affiliations': [{'raw_affiliation_string': 'Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA, USA', 'institution_ids': ['https://openalex.org/I180670191']}, {'raw_affiliation_string': 'Department of Neurology, University of California San Francisco, San Francisco, CA, USA', 'institution_ids': ['https://openalex.org/I180670191']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5022467705', 'display_name': 'Emily Crawford', 'orcid': 'https://orcid.org/0000-0003-4182-2337'}, 'institutions': [{'id': 'https://openalex.org/I180670191', 'display_name': 'University of California, San Francisco', 'ror': 'https://ror.org/043mz5j54', 'country_code': 'US', 'type': 'education', 'lineage': ['https://openalex.org/I180670191']}], 'countries': ['US'], 'is_corresponding': False, 'raw_author_name': 'Emily D. Crawford', 'raw_affiliation_strings': ['Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA, USA'], 'affiliations': [{'raw_affiliation_string': 'Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA, USA', 'institution_ids': ['https://openalex.org/I180670191']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5091824858', 'display_name': 'Eric D. Chow', 'orcid': 'https://orcid.org/0000-0001-8079-918X'}, 'institutions': [{'id': 'https://openalex.org/I180670191', 'display_name': 'University of California, San Francisco', 'ror': 'https://ror.org/043mz5j54', 'country_code': 'US', 'type': 'education', 'lineage': ['https://openalex.org/I180670191']}], 'countries': ['US'], 'is_corresponding': False, 'raw_author_name': 'Eric D. Chow', 'raw_affiliation_strings': ['Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA, USA'], 'affiliations': [{'raw_affiliation_string': 'Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA, USA', 'institution_ids': ['https://openalex.org/I180670191']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5022665588', 'display_name': 'Lillian M. Khan', 'orcid': None}, 'institutions': [{'id': 'https://openalex.org/I180670191', 'display_name': 'University of California, San Francisco', 'ror': 'https://ror.org/043mz5j54', 'country_code': 'US', 'type': 'education', 'lineage': ['https://openalex.org/I180670191']}], 'countries': ['US'], 'is_corresponding': False, 'raw_author_name': 'Lillian M. Khan', 'raw_affiliation_strings': ['Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA, USA'], 'affiliations': [{'raw_affiliation_string': 'Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA, USA', 'institution_ids': ['https://openalex.org/I180670191']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5039258654', 'display_name': 'Kristeene A. Knopp', 'orcid': 'https://orcid.org/0000-0002-0568-7396'}, 'institutions': [{'id': 'https://openalex.org/I180670191', 'display_name': 'University of California, San Francisco', 'ror': 'https://ror.org/043mz5j54', 'country_code': 'US', 'type': 'education', 'lineage': ['https://openalex.org/I180670191']}], 'countries': ['US'], 'is_corresponding': False, 'raw_author_name': 'Kristeene A. Knopp', 'raw_affiliation_strings': ['Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA, USA'], 'affiliations': [{'raw_affiliation_string': 'Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA, USA', 'institution_ids': ['https://openalex.org/I180670191']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5024773247', 'display_name': 'Brian D. O’Donovan', 'orcid': 'https://orcid.org/0000-0002-2901-7530'}, 'institutions': [{'id': 'https://openalex.org/I180670191', 'display_name': 'University of California, San Francisco', 'ror': 'https://ror.org/043mz5j54', 'country_code': 'US', 'type': 'education', 'lineage': ['https://openalex.org/I180670191']}], 'countries': ['US'], 'is_corresponding': False, 'raw_author_name': 'Brian D. O’Donovan', 'raw_affiliation_strings': ['Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA, USA'], 'affiliations': [{'raw_affiliation_string': 'Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA, USA', 'institution_ids': ['https://openalex.org/I180670191']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5061876871', 'display_name': 'Dongxiang Xia', 'orcid': None}, 'institutions': [{'id': 'https://openalex.org/I1336788258', 'display_name': 'California Department of Public Health', 'ror': 'https://ror.org/011cc8156', 'country_code': 'US', 'type': 'government', 'lineage': ['https://openalex.org/I1291847170', 'https://openalex.org/I1336788258', 'https://openalex.org/I4389425283']}], 'countries': ['US'], 'is_corresponding': False, 'raw_author_name': 'Dongxiang Xia', 'raw_affiliation_strings': ['California Department of Public Health, Richmond, CA, USA'], 'affiliations': [{'raw_affiliation_string': 'California Department of Public Health, Richmond, CA, USA', 'institution_ids': ['https://openalex.org/I1336788258']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5037703862', 'display_name': 'Jill K. Hacker', 'orcid': None}, 'institutions': [{'id': 'https://openalex.org/I1336788258', 'display_name': 'California Department of Public Health', 'ror': 'https://ror.org/011cc8156', 'country_code': 'US', 'type': 'government', 'lineage': ['https://openalex.org/I1291847170', 'https://openalex.org/I1336788258', 'https://openalex.org/I4389425283']}], 'countries': ['US'], 'is_corresponding': False, 'raw_author_name': 'Jill K. Hacker', 'raw_affiliation_strings': ['California Department of Public Health, Richmond, CA, USA'], 'affiliations': [{'raw_affiliation_string': 'California Department of Public Health, Richmond, CA, USA', 'institution_ids': ['https://openalex.org/I1336788258']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5055290552', 'display_name': 'Jay M. Stewart', 'orcid': 'https://orcid.org/0000-0003-1054-3423'}, 'institutions': [{'id': 'https://openalex.org/I180670191', 'display_name': 'University of California, San Francisco', 'ror': 'https://ror.org/043mz5j54', 'country_code': 'US', 'type': 'education', 'lineage': ['https://openalex.org/I180670191']}], 'countries': ['US'], 'is_corresponding': False, 'raw_author_name': 'Jay M. Stewart', 'raw_affiliation_strings': ['Department of Ophthalmology, University of California San Francisco, San Francisco, CA, USA'], 'affiliations': [{'raw_affiliation_string': 'Department of Ophthalmology, University of California San Francisco, San Francisco, CA, USA', 'institution_ids': ['https://openalex.org/I180670191']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5008638944', 'display_name': 'John A. Gonzales', 'orcid': 'https://orcid.org/0000-0003-0558-9793'}, 'institutions': [{'id': 'https://openalex.org/I2802636490', 'display_name': 'San Francisco Foundation', 'ror': 'https://ror.org/046jh9k27', 'country_code': 'US', 'type': 'nonprofit', 'lineage': ['https://openalex.org/I2802636490']}, {'id': 'https://openalex.org/I180670191', 'display_name': 'University of California, San Francisco', 'ror': 'https://ror.org/043mz5j54', 'country_code': 'US', 'type': 'education', 'lineage': ['https://openalex.org/I180670191']}], 'countries': ['US'], 'is_corresponding': False, 'raw_author_name': 'John A. Gonzales', 'raw_affiliation_strings': ['Department of Ophthalmology, University of California San Francisco, San Francisco, CA, USA', 'Francis I. Proctor Foundation, University of California San Francisco, San Francisco, CA, USA'], 'affiliations': [{'raw_affiliation_string': 'Francis I. Proctor Foundation, University of California San Francisco, San Francisco, CA, USA', 'institution_ids': ['https://openalex.org/I2802636490', 'https://openalex.org/I180670191']}, {'raw_affiliation_string': 'Department of Ophthalmology, University of California San Francisco, San Francisco, CA, USA', 'institution_ids': ['https://openalex.org/I180670191']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5091117608', 'display_name': 'Nisha R. Acharya', 'orcid': 'https://orcid.org/0000-0002-9762-9475'}, 'institutions': [{'id': 'https://openalex.org/I2802636490', 'display_name': 'San Francisco Foundation', 'ror': 'https://ror.org/046jh9k27', 'country_code': 'US', 'type': 'nonprofit', 'lineage': ['https://openalex.org/I2802636490']}, {'id': 'https://openalex.org/I180670191', 'display_name': 'University of California, San Francisco', 'ror': 'https://ror.org/043mz5j54', 'country_code': 'US', 'type': 'education', 'lineage': ['https://openalex.org/I180670191']}], 'countries': ['US'], 'is_corresponding': False, 'raw_author_name': 'Nisha R. Acharya', 'raw_affiliation_strings': ['Department of Ophthalmology, University of California San Francisco, San Francisco, CA, USA', 'Francis I. Proctor Foundation, University of California San Francisco, San Francisco, CA, USA'], 'affiliations': [{'raw_affiliation_string': 'Francis I. Proctor Foundation, University of California San Francisco, San Francisco, CA, USA', 'institution_ids': ['https://openalex.org/I2802636490', 'https://openalex.org/I180670191']}, {'raw_affiliation_string': 'Department of Ophthalmology, University of California San Francisco, San Francisco, CA, USA', 'institution_ids': ['https://openalex.org/I180670191']}]}, {'author_position': 'last', 'author': {'id': 'https://openalex.org/A5039824565', 'display_name': 'Joseph L. DeRisi', 'orcid': 'https://orcid.org/0000-0002-4611-9205'}, 'institutions': [{'id': 'https://openalex.org/I180670191', 'display_name': 'University of California, San Francisco', 'ror': 'https://ror.org/043mz5j54', 'country_code': 'US', 'type': 'education', 'lineage': ['https://openalex.org/I180670191']}], 'countries': ['US'], 'is_corresponding': False, 'raw_author_name': 'Joseph L. DeRisi', 'raw_affiliation_strings': ['Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA, USA'], 'affiliations': [{'raw_affiliation_string': 'Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA, USA', 'institution_ids': ['https://openalex.org/I180670191']}]}], 'institution_assertions': [], 'countries_distinct_count': 1, 'institutions_distinct_count': 3, 'corresponding_author_ids': [], 'corresponding_institution_ids': [], 'apc_list': {'value': 3060, 'currency': 'GBP', 'value_usd': 3753, 'provenance': 'doaj'}, 'apc_paid': {'value': 3060, 'currency': 'GBP', 'value_usd': 3753, 'provenance': 'doaj'}, 'fwci': 14.124, 'has_fulltext': True, 'fulltext_origin': 'pdf', 'cited_by_count': 182, 'citation_normalized_percentile': {'value': 0.999971, 'is_in_top_1_percent': True, 'is_in_top_10_percent': True}, 'cited_by_percentile_year': {'min': 99, 'max': 100}, 'biblio': {'volume': '8', 'issue': '1', 'first_page': None, 'last_page': None}, 'is_retracted': False, 'is_paratext': False, 'primary_topic': {'id': 'https://openalex.org/T11194', 'display_name': 'Ocular Diseases and Behçet’s Syndrome', 'score': 0.9967, 'subfield': {'id': 'https://openalex.org/subfields/2731', 'display_name': 'Ophthalmology'}, 'field': {'id': 'https://openalex.org/fields/27', 'display_name': 'Medicine'}, 'domain': {'id': 'https://openalex.org/domains/4', 'display_name': 'Health Sciences'}}, 'topics': [{'id': 'https://openalex.org/T11194', 'display_name': 'Ocular Diseases and Behçet’s Syndrome', 'score': 0.9967, 'subfield': {'id': 'https://openalex.org/subfields/2731', 'display_name': 'Ophthalmology'}, 'field': {'id': 'https://openalex.org/fields/27', 'display_name': 'Medicine'}, 'domain': {'id': 'https://openalex.org/domains/4', 'display_name': 'Health Sciences'}}, {'id': 'https://openalex.org/T10981', 'display_name': 'Cytomegalovirus and herpesvirus research', 'score': 0.9938, 'subfield': {'id': 'https://openalex.org/subfields/2713', 'display_name': 'Epidemiology'}, 'field': {'id': 'https://openalex.org/fields/27', 'display_name': 'Medicine'}, 'domain': {'id': 'https://openalex.org/domains/4', 'display_name': 'Health Sciences'}}, {'id': 'https://openalex.org/T11668', 'display_name': 'interferon and immune responses', 'score': 0.993, 'subfield': {'id': 'https://openalex.org/subfields/2403', 'display_name': 'Immunology'}, 'field': {'id': 'https://openalex.org/fields/24', 'display_name': 'Immunology and Microbiology'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}], 'keywords': [{'id': 'https://openalex.org/keywords/human-genetics', 'display_name': 'Human genetics', 'score': 0.73375285}], 'concepts': [{'id': 'https://openalex.org/C15151743', 'wikidata': 'https://www.wikidata.org/wiki/Q903778', 'display_name': 'Metagenomics', 'level': 3, 'score': 0.86435986}, {'id': 'https://openalex.org/C47042493', 'wikidata': 'https://www.wikidata.org/wiki/Q265799', 'display_name': 'Human genetics', 'level': 3, 'score': 0.73375285}, {'id': 'https://openalex.org/C70721500', 'wikidata': 'https://www.wikidata.org/wiki/Q177005', 'display_name': 'Computational biology', 'level': 1, 'score': 0.62815464}, {'id': 'https://openalex.org/C86803240', 'wikidata': 'https://www.wikidata.org/wiki/Q420', 'display_name': 'Biology', 'level': 0, 'score': 0.5214088}, {'id': 'https://openalex.org/C51679486', 'wikidata': 'https://www.wikidata.org/wiki/Q380546', 'display_name': 'DNA sequencing', 'level': 3, 'score': 0.51216173}, {'id': 'https://openalex.org/C71924100', 'wikidata': 'https://www.wikidata.org/wiki/Q11190', 'display_name': 'Medicine', 'level': 0, 'score': 0.38998115}, {'id': 'https://openalex.org/C60644358', 'wikidata': 'https://www.wikidata.org/wiki/Q128570', 'display_name': 'Bioinformatics', 'level': 1, 'score': 0.3687719}, {'id': 'https://openalex.org/C54355233', 'wikidata': 'https://www.wikidata.org/wiki/Q7162', 'display_name': 'Genetics', 'level': 1, 'score': 0.34273243}, {'id': 'https://openalex.org/C104317684', 'wikidata': 'https://www.wikidata.org/wiki/Q7187', 'display_name': 'Gene', 'level': 2, 'score': 0.12093845}], 'mesh': [{'descriptor_ui': 'D003455', 'descriptor_name': 'Cryptococcus neoformans', 'qualifier_ui': 'Q000235', 'qualifier_name': 'genetics', 'is_major_topic': True}, {'descriptor_ui': 'D018259', 'descriptor_name': 'Herpesvirus 1, Human', 'qualifier_ui': 'Q000235', 'qualifier_name': 'genetics', 'is_major_topic': True}, {'descriptor_ui': 'D014122', 'descriptor_name': 'Toxoplasma', 'qualifier_ui': 'Q000235', 'qualifier_name': 'genetics', 'is_major_topic': True}, {'descriptor_ui': 'D014605', 'descriptor_name': 'Uveitis', 'qualifier_ui': 'Q000175', 'qualifier_name': 'diagnosis', 'is_major_topic': True}, {'descriptor_ui': 'D001082', 'descriptor_name': 'Aqueous Humor', 'qualifier_ui': 'Q000382', 'qualifier_name': 'microbiology', 'is_major_topic': False}, {'descriptor_ui': 'D003453', 'descriptor_name': 'Cryptococcosis', 'qualifier_ui': 'Q000175', 'qualifier_name': 'diagnosis', 'is_major_topic': False}, {'descriptor_ui': 'D006561', 'descriptor_name': 'Herpes Simplex', 'qualifier_ui': 'Q000175', 'qualifier_name': 'diagnosis', 'is_major_topic': False}, {'descriptor_ui': 'D059014', 'descriptor_name': 'High-Throughput Nucleotide Sequencing', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D006801', 'descriptor_name': 'Humans', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D056186', 'descriptor_name': 'Metagenomics', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D010802', 'descriptor_name': 'Phylogeny', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D012409', 'descriptor_name': 'Rubella', 'qualifier_ui': 'Q000175', 'qualifier_name': 'diagnosis', 'is_major_topic': False}, {'descriptor_ui': 'D012412', 'descriptor_name': 'Rubella virus', 'qualifier_ui': 'Q000145', 'qualifier_name': 'classification', 'is_major_topic': False}, {'descriptor_ui': 'D014123', 'descriptor_name': 'Toxoplasmosis', 'qualifier_ui': 'Q000175', 'qualifier_name': 'diagnosis', 'is_major_topic': False}, {'descriptor_ui': 'D014602', 'descriptor_name': 'Uvea', 'qualifier_ui': 'Q000382', 'qualifier_name': 'microbiology', 'is_major_topic': False}, {'descriptor_ui': 'D014779', 'descriptor_name': 'Virus Replication', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}], 'locations_count': 6, 'locations': [{'is_oa': True, 'landing_page_url': 'https://doi.org/10.1186/s13073-016-0344-6', 'pdf_url': 'https://genomemedicine.biomedcentral.com/track/pdf/10.1186/s13073-016-0344-6', 'source': {'id': 'https://openalex.org/S149201819', 'display_name': 'Genome Medicine', 'issn_l': '1756-994X', 'issn': ['1756-994X'], 'is_oa': True, 'is_in_doaj': True, 'is_core': True, 'host_organization': 'https://openalex.org/P4310320256', 'host_organization_name': 'BioMed Central', 'host_organization_lineage': ['https://openalex.org/P4310319965', 'https://openalex.org/P4310320256'], 'host_organization_lineage_names': ['Springer Nature', 'BioMed Central'], 'type': 'journal'}, 'license': 'cc-by', 'license_id': 'https://openalex.org/licenses/cc-by', 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, {'is_oa': True, 'landing_page_url': 'https://europepmc.org/articles/pmc4997733', 'pdf_url': 'https://europepmc.org/articles/pmc4997733?pdf=render', 'source': {'id': 'https://openalex.org/S4306400806', 'display_name': 'Europe PMC (PubMed Central)', 'issn_l': None, 'issn': None, 'is_oa': True, 'is_in_doaj': False, 'is_core': False, 'host_organization': 'https://openalex.org/I1303153112', 'host_organization_name': 'European Bioinformatics Institute', 'host_organization_lineage': ['https://openalex.org/I1303153112'], 'host_organization_lineage_names': ['European Bioinformatics Institute'], 'type': 'repository'}, 'license': 'cc-by', 'license_id': 'https://openalex.org/licenses/cc-by', 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, {'is_oa': True, 'landing_page_url': 'https://escholarship.org/uc/item/6n90t4c2', 'pdf_url': 'https://escholarship.org/content/qt6n90t4c2/qt6n90t4c2.pdf?t=oe638b', 'source': {'id': 'https://openalex.org/S4306400115', 'display_name': 'eScholarship (California Digital Library)', 'issn_l': None, 'issn': None, 'is_oa': True, 'is_in_doaj': False, 'is_core': False, 'host_organization': 'https://openalex.org/I2801248553', 'host_organization_name': 'California Digital Library', 'host_organization_lineage': ['https://openalex.org/I2801248553'], 'host_organization_lineage_names': ['California Digital Library'], 'type': 'repository'}, 'license': 'cc-by', 'license_id': 'https://openalex.org/licenses/cc-by', 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, {'is_oa': True, 'landing_page_url': 'https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4997733', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S2764455111', 'display_name': 'PubMed Central', 'issn_l': None, 'issn': None, 'is_oa': True, 'is_in_doaj': False, 'is_core': False, 'host_organization': 'https://openalex.org/I1299303238', 'host_organization_name': 'National Institutes of Health', 'host_organization_lineage': ['https://openalex.org/I1299303238'], 'host_organization_lineage_names': ['National Institutes of Health'], 'type': 'repository'}, 'license': None, 'license_id': None, 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, {'is_oa': True, 'landing_page_url': 'https://doi.org/10.1101/054148', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S4306402567', 'display_name': 'bioRxiv (Cold Spring Harbor Laboratory)', 'issn_l': None, 'issn': None, 'is_oa': True, 'is_in_doaj': False, 'is_core': False, 'host_organization': 'https://openalex.org/I2750212522', 'host_organization_name': 'Cold Spring Harbor Laboratory', 'host_organization_lineage': ['https://openalex.org/I2750212522'], 'host_organization_lineage_names': ['Cold Spring Harbor Laboratory'], 'type': 'repository'}, 'license': None, 'license_id': None, 'version': 'submittedVersion', 'is_accepted': False, 'is_published': False}, {'is_oa': False, 'landing_page_url': 'https://pubmed.ncbi.nlm.nih.gov/27562436', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S4306525036', 'display_name': 'PubMed', 'issn_l': None, 'issn': None, 'is_oa': False, 'is_in_doaj': False, 'is_core': False, 'host_organization': 'https://openalex.org/I1299303238', 'host_organization_name': 'National Institutes of Health', 'host_organization_lineage': ['https://openalex.org/I1299303238'], 'host_organization_lineage_names': ['National Institutes of Health'], 'type': 'repository'}, 'license': None, 'license_id': None, 'version': None, 'is_accepted': False, 'is_published': False}], 'best_oa_location': {'is_oa': True, 'landing_page_url': 'https://doi.org/10.1186/s13073-016-0344-6', 'pdf_url': 'https://genomemedicine.biomedcentral.com/track/pdf/10.1186/s13073-016-0344-6', 'source': {'id': 'https://openalex.org/S149201819', 'display_name': 'Genome Medicine', 'issn_l': '1756-994X', 'issn': ['1756-994X'], 'is_oa': True, 'is_in_doaj': True, 'is_core': True, 'host_organization': 'https://openalex.org/P4310320256', 'host_organization_name': 'BioMed Central', 'host_organization_lineage': ['https://openalex.org/P4310319965', 'https://openalex.org/P4310320256'], 'host_organization_lineage_names': ['Springer Nature', 'BioMed Central'], 'type': 'journal'}, 'license': 'cc-by', 'license_id': 'https://openalex.org/licenses/cc-by', 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, 'sustainable_development_goals': [{'id': 'https://metadata.un.org/sdg/3', 'display_name': 'Good health and well-being', 'score': 0.84}], 'grants': [{'funder': 'https://openalex.org/F4320306082', 'funder_display_name': 'Howard Hughes Medical Institute', 'award_id': None}, {'funder': 'https://openalex.org/F4320308203', 'funder_display_name': 'California Department of Public Health', 'award_id': None}, {'funder': 'https://openalex.org/F4320309508', 'funder_display_name': 'Sandler Foundation', 'award_id': None}, {'funder': 'https://openalex.org/F4320311884', 'funder_display_name': 'William K. Bowes, Jr. Foundation', 'award_id': None}, {'funder': 'https://openalex.org/F4320332162', 'funder_display_name': 'Centers for Disease Control and Prevention', 'award_id': 'U60OE000103'}, {'funder': 'https://openalex.org/F4320337472', 'funder_display_name': 'National Center for Advancing Translational Sciences', 'award_id': 'KL2TR000143'}], 'datasets': [], 'versions': [], 'referenced_works_count': 34, 'referenced_works': ['https://openalex.org/W1519266993', 'https://openalex.org/W1659618301', 'https://openalex.org/W1980052770', 'https://openalex.org/W1981665475', 'https://openalex.org/W1993059740', 'https://openalex.org/W1996355006', 'https://openalex.org/W2004798786', 'https://openalex.org/W2036011335', 'https://openalex.org/W2065498335', 'https://openalex.org/W2068136640', 'https://openalex.org/W2074074859', 'https://openalex.org/W2096441981', 'https://openalex.org/W2099521578', 'https://openalex.org/W2106780559', 'https://openalex.org/W2107745473', 'https://openalex.org/W2112350829', 'https://openalex.org/W2120715392', 'https://openalex.org/W2122210493', 'https://openalex.org/W2124648649', 'https://openalex.org/W2127813918', 'https://openalex.org/W2131170122', 'https://openalex.org/W2140733984', 'https://openalex.org/W2145210428', 'https://openalex.org/W2153133495', 'https://openalex.org/W2169456326', 'https://openalex.org/W2170551349', 'https://openalex.org/W2170747616', 'https://openalex.org/W2261656626', 'https://openalex.org/W2291953138', 'https://openalex.org/W277041599', 'https://openalex.org/W4210365593', 'https://openalex.org/W4253875289', 'https://openalex.org/W4292001346', 'https://openalex.org/W4299861055'], 'related_works': ['https://openalex.org/W4297131566', 'https://openalex.org/W4285082713', 'https://openalex.org/W3195915274', 'https://openalex.org/W2487541429', 'https://openalex.org/W2344981695', 'https://openalex.org/W2329606903', 'https://openalex.org/W2210738511', 'https://openalex.org/W2080583581', 'https://openalex.org/W2017364432', 'https://openalex.org/W1910109602'], 'abstract_inverted_index': {'Ocular': [0], 'infections': [1], 'remain': [2], 'a': [3, 62, 86, 108, 158, 189, 202, 263], 'major': [4], 'cause': [5], 'of': [6, 20, 29, 36, 56, 122, 176, 215, 246, 252], 'blindness': [7], 'and': [8, 18, 78, 94, 137, 150, 204, 212, 238, 240, 273], 'morbidity': [9], 'worldwide.': [10], 'While': [11], 'prognosis': [12], 'is': [13, 39, 61], 'dependent': [14], 'on': [15], 'the': [16, 22, 114, 213, 221, 231, 259], 'timing': [17], 'accuracy': [19], 'diagnosis,': [21], 'etiology': [23], 'remains': [24], 'elusive': [25], 'in': [26, 52, 65, 131, 173, 195, 208, 220, 230, 243], '~50': [27], '%': [28], 'presumed': [30], 'infectious': [31], 'uveitis': [32, 84], 'cases.': [33], 'The': [34, 181, 210, 250], 'objective': [35], 'this': [37], 'study': [38], 'to': [40, 92, 112, 188], 'determine': [41], 'if': [42], 'unbiased': [43], 'metagenomic': [44], 'deep': [45], 'sequencing': [46], '(MDS)': [47], 'can': [48, 234], 'accurately': [49], 'detect': [50], 'pathogens': [51], 'intraocular': [53, 67, 123, 247, 254], 'fluid': [54, 68, 124, 248], 'samples': [55, 69], 'patients': [57], 'with': [58, 75, 81, 98, 128, 133, 167, 226], 'uveitis.': [59, 142, 180], 'This': [60], 'proof-of-concept': [63], 'study,': [64], 'which': [66, 267], 'were': [70, 90, 96, 105, 164, 224], 'obtained': [71, 117], 'from': [72, 100, 118], 'five': [73], 'subjects': [74, 132], 'known': [76, 87, 129], 'diagnoses,': [77], 'one': [79, 174, 197], 'subject': [80], 'bilateral': [82, 178], 'chronic': [83, 177, 253], 'without': [85, 138], 'etiology.': [88], 'Samples': [89, 143], 'subjected': [91], 'MDS,': [93], 'results': [95, 126], 'compared': [97], 'those': [99], 'conventional': [101], 'diagnostic': [102], 'tests.': [103], 'Pathogens': [104], 'identified': [106, 166, 172, 217], 'using': [107], 'rapid': [109], 'computational': [110], 'pipeline': [111], 'analyze': [113], 'non-host': [115], 'sequences': [116], 'MDS.': [119, 168], 'Unbiased': [120], 'MDS': [121, 233], 'produced': [125], 'concordant': [127], 'diagnoses': [130], '(n': [134, 139], '=': [135, 140], '4)': [136], '1)': [141], 'positive': [144], 'for': [145, 270], 'Cryptococcus': [146], 'neoformans,': [147], 'Toxoplasma': [148], 'gondii,': [149], 'herpes': [151], 'simplex': [152], 'virus': [153, 170, 192, 256, 271], '1': [154], 'as': [155, 262], 'tested': [156], 'by': [157], 'Clinical': [159], 'Laboratory': [160], 'Improvement': [161], 'Amendments-certified': [162], 'laboratory': [163], 'correctly': [165], 'Rubella': [169], 'was': [171, 184], 'case': [175], 'idiopathic': [179], "subject's": [182], 'strain': [183, 193, 223], 'most': [185], 'closely': [186], 'related': [187], 'German': [190], 'rubella': [191, 255], 'isolated': [194], '1992,': [196], 'year': [198], 'before': [199], 'he': [200], 'developed': [201], 'fever': [203], 'rash': [205], 'while': [206], 'living': [207], 'Germany.': [209], 'pattern': [211], 'number': [214], 'viral': [216, 228], 'mutations': [218], 'present': [219], "patient's": [222], 'consistent': [225], 'long-term': [227, 264], 'replication': [229], 'eye.': [232], 'identify': [235], 'fungi,': [236], 'parasites,': [237], 'DNA': [239], 'RNA': [241], 'viruses': [242], 'minute': [244], 'volumes': [245], 'samples.': [249], 'identification': [251], 'infection': [257], 'highlights': [258], "eye's": [260], 'role': [261], 'pathogen': [265], 'reservoir,': [266], 'has': [268], 'implications': [269], 'eradication': [272], 'emerging': [274], 'global': [275], 'epidemics.': [276]}, 'cited_by_api_url': 'https://api.openalex.org/works?filter=cites:W2513861476', 'counts_by_year': [{'year': 2024, 'cited_by_count': 18}, {'year': 2023, 'cited_by_count': 24}, {'year': 2022, 'cited_by_count': 24}, {'year': 2021, 'cited_by_count': 26}, {'year': 2020, 'cited_by_count': 22}, {'year': 2019, 'cited_by_count': 20}, {'year': 2018, 'cited_by_count': 26}, {'year': 2017, 'cited_by_count': 17}, {'year': 2016, 'cited_by_count': 2}], 'updated_date': '2024-12-24T12:04:08.043607', 'created_date': '2016-09-16'}