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'Goble2': [626], '1Manchester': [627], '2School': [637], '3Leiden': [646], '4Heidelberg': [663], '5European': [670], '6Department': [680], '7Babraham': [690], '8Department': [694], '9School': [703], '*Corresponding': [716], 'author.': [717], 'Tel:': [718], '+44': [719], '161': [720], '275': [721], '0145;': [722], 'E-mail:': [723], '[email': [724], 'protected]': [725], 'Systems': [727, 755, 799, 1128, 1189, 1195, 1622, 2608], '(2015)11:851https://doi.org/10.15252/msb.20156053': [729], 'See': [730], 'also:': [731], 'T': [732], 'Lemberger': [733], '(December': [734], '2015)': [735, 1368, 1772], 'PDFDownload': [736], 'PDF': [737], 'article': [739], 'text': [740], 'main': [742], 'figures.': [743], 'ToolsAdd': [744], 'to': [745, 767, 784, 792, 806, 826, 848, 897, 966, 1231, 1326, 1440, 1553, 1609, 1626, 1710, 1761, 1857, 1867, 1946, 1954, 1976, 2019, 2026, 2052, 2062, 2123, 2855, 2868], 'favoritesDownload': [746], 'CitationsTrack': [747], 'CitationsPermissions': [748], 'ShareFacebookTwitterLinked': [749], 'InMendeleyWechatReddit': [750], 'Figures': [751], 'Info': [753], 'Introduction': [754], 'involves': [757], 'the': [758, 816, 828, 846, 850, 902, 930, 940, 982, 997, 1183, 1242, 1348, 1356, 1414, 1434, 1475, 1516, 1520, 1528, 1565, 1573, 1597, 1603, 1651, 1774, 1784, 1834, 1854, 1927, 1985, 2009, 2017, 2020, 2036, 2056, 2079, 2114, 2159, 2163, 2168, 2198, 2217, 2226, 2237, 2254, 2314, 2586, 2612, 2660, 2780, 2792], 'integration': [759, 830, 1828], 'multiple': [761], 'heterogeneous': [762], 'sets,': [764], 'order': [766], 'model': [768, 863, 877, 1053, 1450, 1508, 1900, 2137, 2764], 'predict': [770, 2869], 'biological': [771, 1860], 'processes.': [772], "domain's": [774], 'interdisciplinary': [775], 'nature': [776], 'requires': [777, 1265], 'data,': [778, 834, 889, 1629, 1928], 'models': [779, 890, 1042, 1146, 1225, 1399, 1633, 1763, 1777, 1789, 1830, 1909, 1951, 1958, 1978, 2018], 'other': [781], 'research': [782, 1598, 1620, 1680, 1967, 2037], 'assets': [783, 1621, 1681, 2054, 2061], 'be': [785, 1003, 1232, 1552, 1863, 1935, 1941, 2003, 2111], 'formatted': [786], 'described': [788], 'standard': [790, 1090, 1371, 1555], 'ways': [791], 'enable': [793, 2063], 'exchange': [794, 832, 1267, 1375, 1627, 1646], 'reuse.': [796], 'Infrastructure': [797, 1126], 'Europe': [801, 1130], '(ISBE)': [802], 'is': [803, 825, 1250, 1257, 1354, 1536, 1539, 1570, 1758, 1773, 1780, 1846, 1917, 2033, 2176, 2865], 'a': [804, 926, 967, 979, 1052, 1166, 1174, 1215, 1328, 1442, 1541, 1648, 1697, 1808, 1874, 1923, 1963, 2375, 2719, 2759, 2857], 'project': [805, 2239], 'establish': [807], 'essential,': [808], 'centralized': [809, 2085], 'services': [810], 'researchers': [814, 859, 1624, 1654, 1880, 2117], 'throughout': [815], 'lifecycle.': [819], 'A': [820, 990, 1549, 1839, 2796], 'key': [821, 869, 1649, 1694], 'component': [822], 'ISBE': [824, 842, 949, 1125], 'support': [827, 1579, 1894, 2044, 2124], 'management,': [829], 'models,': [835, 1048, 1346], 'results': [836, 984, 986, 1585, 1845, 1872], 'protocols.': [838], 'To': [839, 954, 2077], 'inform': [840], 'further': [841], 'development,': [843], 'we': [844, 962, 1295, 2039, 2082], 'surveyed': [845], 'community': [847, 933, 1227, 1280, 2129, 2613], 'evaluate': [849], 'uptake': [851, 957, 1247, 1386, 1535, 1569], 'available': [853], 'standards,': [854, 2045], 'current': [856], 'management.': [864], 'survey': [866, 894, 941, 983], 'addressed': [867], 'four': [868], 'areas': [870, 1994], 'as': [871, 945, 1049, 1051, 1209, 1284, 1302, 1347, 1417, 1484, 1886, 1993, 2096, 2118, 2120, 2142], 'follows:': [872, 1303], 'Standards': [873, 1134, 1218, 1394], 'usage;': [874], 'Data': [875, 1089, 1793], 'storage': [878], 'before': [879], 'publication;': [880, 886], 'Sharing': [881, 1751, 1906], 'public': [883, 1753, 1756, 1947], 'repositories': [884, 1754, 1757], 'after': [885, 1790], 'Reusability': [887, 1949], 'results.': [892], 'was': [895, 2024, 2155], 'sent': [896], 'major': [898, 1298, 1566, 1840], 'mailing': [899], 'lists': [900], 'targeting': [901], 'computational': [906, 1041], 'communities': [908], 'advertised': [910], 'at': [911], 'relevant': [912, 2536], 'consortia': [913], 'meetings.': [914], 'It': [915, 2032], 'elicited': [916], '153': [917], 'responses,': [918], 'from': [919, 939, 1853, 2035, 2150, 2197, 2225, 2246, 2253], '17': [920], 'countries': [921], 'across': [922, 2055], '6': [923], 'continents,': [924], 'with': [925, 1359, 1522, 1640, 1688, 1738, 2005, 2092, 2829], 'cross': [927], 'section': [928], 'represented': [934], '(Appendix': [935], 'Fig': [936, 976], 'S1).': [937], 'Lessons': [938], 'are': [942, 994, 1276, 1406, 1424, 1474, 1481, 1515, 1707, 1716, 1794, 1836, 1944, 2827, 2849], 'being': [943, 1647], 'implemented': [944], 'part': [946, 1595], 'an': [948, 1210], 'supporting': [950], 'project,': [951], 'FAIRDOM': [952, 1084], '(www.fair-dom.org).': [953], 'understand': [955], 'how': [956], 'has': [960, 1389], 'developed,': [961], 'compared': [963], 'our': [964], 'findings': [965], 'previous': [968], 'study': [969], 'Klipp': [971, 1336, 2597, 2639, 2701], 'et': [972, 1287, 1337, 1366, 1460, 1465, 1471, 1497, 1504, 1512, 1770, 1890, 2369, 2484, 2713], 'al': [973, 1338, 2370, 2485, 2714], '2007.': [975, 1393, 1422, 1526], '1': [977], 'shows': [978], 'summary': [980], '(detailed': [985], 'Dataset': [988, 2263], 'EV1).': [989], 'number': [991], 'acronyms': [993, 1019], 'used': [995, 1351, 1477, 1483, 1718, 2025], 'within': [996, 1487, 1636, 1670], 'text,': [998], 'details': [999], 'which': [1001, 1207, 1263, 1871, 1893, 1929], 'can': [1002, 1675, 1822, 1862, 2110], 'found': [1004, 1973], 'Table': [1006, 1015], '1.': [1007, 1016], 'Figure': [1008], '1.Survey': [1009], 'summary.': [1010], 'Download': [1011, 1013], 'figure': [1012], 'PowerPoint': [1014], 'Glossary': [1017], 'Acronym': [1020], 'Description': [1021], 'Link': [1022], 'Array': [1023, 1025], 'Ex.': [1024], 'Express—archive': [1026], 'functional': [1028, 1109, 1895], 'genomics': [1029, 1110], 'https://www.ebi.ac.uk/arrayexpress/': [1031], 'BioModels': [1032, 1768], 'Database': [1033], 'storing': [1035], 'curated': [1036], 'non-curated': [1038], 'https://www.ebi.ac.uk/biomodels/': [1043], 'CellML': [1044], 'Standard': [1045, 1304, 1311], 'formatting': [1047, 1396], 'well': [1050, 1837, 2119], 'repository': [1054], 'https://www.cellml.org/': [1055], 'ChEBI': [1056, 2529], 'Entities': [1058], 'Biological': [1060], 'Interest—a': [1061], 'dictionary': [1062], 'molecular': [1064], 'entities': [1065], 'https://www.ebi.ac.uk/chebi/init.do': [1066], 'COMBINE': [1067, 1285, 2587], 'Computational': [1068], 'Modelling': [1069], 'Network': [1072], 'http://co.mbine.org': [1073], 'ENA': [1074], 'Nucleotide': [1076], 'Archive—a': [1077], 'comprehensive': [1078], 'record': [1079], 'nucleotide': [1081, 1101], 'sequences': [1082, 1102], 'http://www.ebi.ac.uk/ena': [1083], 'Findable': [1085], 'Accessible': [1086], 'Interoperable': [1087], 'Reusable': [1088], 'Operating': [1091], 'Procedures': [1092], 'Models': [1094, 1186, 2664], 'http://fair-dom.org': [1095], 'FASTA': [1096], 'Text-based': [1097], 'format': [1098], 'representing': [1100, 1307], 'https://en.wikipedia.org/wiki/FASTA_format': [1103], 'GEO': [1104], 'Gene': [1105, 1114, 2310, 2319], 'Expression': [1106], 'Omnibus—repository': [1107], 'http://www.ncbi.nlm.nih.gov/geo/': [1112], 'GO': [1113], 'Ontology—a': [1115], 'controlled': [1116], 'vocabulary': [1117], 'gene': [1119, 1121, 1493], 'product': [1122], 'attributes': [1123], 'http://geneontology.org/': [1124], 'http://project.isbe.eu': [1131], 'ISO': [1132], 'International': [1133], 'Organization': [1135], 'http://www.iso.org': [1136], 'JWS': [1137], 'Online': [1138, 2499], 'Tool': [1139], 'online': [1141], 'simulation': [1142], 'http://jjj.mib.ac.uk/': [1147], 'KISAO': [1148], 'Kinetic': [1149], 'Simulation': [1150, 1175, 2720], 'Algorithm': [1151], 'Ontology,': [1152], 'identifying': [1154, 1824], 'algorithms': [1155], 'associated': [1157, 1980], 'set-up': [1158], 'simulations': [1160, 1509], 'http://co.mbine.org/standards/kisao': [1161], 'MIAME': [1162, 1463], 'Minimum': [1163, 1171, 1179, 2372, 2656, 2716], 'about': [1165, 1173, 2374], 'Microarray': [1167], 'Experiment': [1168, 1176, 2721], 'http://fged.org/projects/miame/': [1169], 'MIASE': [1170, 1469], 'http://co.mbine.org/standards/miase': [1177], 'MIRIAM': [1178, 1457], 'Required': [1181], 'Annotation': [1184, 2661], 'http://co.mbine.org/standards/miriam': [1187], 'SBGN': [1188, 1363], 'Graphical': [1191], 'Notation': [1192], 'http://www.sbgn.org/': [1193], 'SBML': [1194, 1360], 'Mark-up': [1197], 'Language': [1198], 'http://sbml.org/': [1199], 'SEEK': [1200, 1887], 'Bespoke': [1201, 1726], 'platform,': [1206], 'works': [1208], 'aggregated': [1211], 'content': [1212, 1882], 'commons,': [1213, 1884], 'database': [1216, 1778, 2531], 'http://fair-dom.org/SEEK': [1217], 'usage': [1219], 'Formatting': [1220], 'describing': [1222, 1315, 1413], 'using': [1226, 2803], 'enables': [1229], 'them': [1230], 'understood,': [1233], 'compared,': [1234], 'exchanged': [1235], 'reused': [1237], 'both': [1239], 'collaborators': [1240, 1635], 'wider': [1243], 'community.': [1244], 'As': [1245], 'such,': [1246], 'vital': [1251], 'high-quality,': [1253], 'reproducible': [1254], 'research.': [1255], 'This': [1256, 1353, 1674, 1821, 1921, 2109, 2788], 'especially': [1258], 'true': [1259], 'naturally': [1264], 'frequent': [1266], 'models.': [1271, 2076], 'In': [1272, 1292, 1334, 2659], 'biology,': [1274], 'primarily': [1277, 2157], 'developed': [1278], 'standardization': [1281, 2093], 'initiatives': [1282, 2094], 'such': [1283, 1885, 2095, 2141], '(Hucka': [1286, 1365], 'al,': [1288, 1367, 1461, 1466, 1472, 1498, 1505, 1513, 1771, 1891], '2015),': [1289, 1892], 'ISO.': [1291], 'study,': [1294], 'consider': [1296], 'three': [1297], 'types': [1299, 1317, 1451, 1560], 'formats': [1305, 1372, 1388], 'models;': [1310, 1321], 'metadata': [1312, 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