Non-cyanobacterial diazotrophs mediate dinitrogen fixation in biological soil crusts during early crust formation

Name: Work Video:
Duration: 3 min 30 s
Charles Pepe‐Ranney; Chantal Koechli; Ruth M. Potrafka; Cheryl P. Andam; Erin M. Eggleston; Ferrán García‐Pichel; Daniel H. Buckley
{'id': 'https://openalex.org/W2178056883', 'doi': 'https://doi.org/10.1101/013813', 'title': 'Non-cyanobacterial diazotrophs mediate dinitrogen fixation in biological soil crusts during early crust formation', 'display_name': 'Non-cyanobacterial diazotrophs mediate dinitrogen fixation in biological soil crusts during early crust formation', 'publication_year': 2015, 'publication_date': '2015-01-15', 'ids': {'openalex': 'https://openalex.org/W2178056883', 'doi': 'https://doi.org/10.1101/013813', 'mag': '2178056883'}, 'language': 'en', 'primary_location': {'is_oa': True, 'landing_page_url': 'https://doi.org/10.1101/013813', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S4306402567', 'display_name': 'bioRxiv (Cold Spring Harbor Laboratory)', 'issn_l': None, 'issn': None, 'is_oa': True, 'is_in_doaj': False, 'is_core': False, 'host_organization': 'https://openalex.org/I2750212522', 'host_organization_name': 'Cold Spring Harbor Laboratory', 'host_organization_lineage': ['https://openalex.org/I2750212522'], 'host_organization_lineage_names': ['Cold Spring Harbor Laboratory'], 'type': 'repository'}, 'license': 'cc-by-nc-nd', 'license_id': 'https://openalex.org/licenses/cc-by-nc-nd', 'version': 'submittedVersion', 'is_accepted': False, 'is_published': False}, 'type': 'preprint', 'type_crossref': 'posted-content', 'indexed_in': ['crossref'], 'open_access': {'is_oa': True, 'oa_status': 'green', 'oa_url': 'https://doi.org/10.1101/013813', 'any_repository_has_fulltext': True}, 'authorships': [{'author_position': 'first', 'author': {'id': 'https://openalex.org/A5075475261', 'display_name': 'Charles Pepe‐Ranney', 'orcid': 'https://orcid.org/0000-0002-1791-869X'}, 'institutions': [{'id': 'https://openalex.org/I205783295', 'display_name': 'Cornell University', 'ror': 'https://ror.org/05bnh6r87', 'country_code': 'US', 'type': 'education', 'lineage': ['https://openalex.org/I205783295']}], 'countries': ['US'], 'is_corresponding': False, 'raw_author_name': 'Charles Pepe-Ranney', 'raw_affiliation_strings': ['Cornell University, Department of Crop and Soil Sciences, Ithaca, NY, USA'], 'affiliations': [{'raw_affiliation_string': 'Cornell University, Department of Crop and Soil Sciences, Ithaca, NY, USA', 'institution_ids': ['https://openalex.org/I205783295']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5012375752', 'display_name': 'Chantal Koechli', 'orcid': None}, 'institutions': [{'id': 'https://openalex.org/I205783295', 'display_name': 'Cornell University', 'ror': 'https://ror.org/05bnh6r87', 'country_code': 'US', 'type': 'education', 'lineage': ['https://openalex.org/I205783295']}], 'countries': ['US'], 'is_corresponding': False, 'raw_author_name': 'Chantal Koechli', 'raw_affiliation_strings': ['Cornell University, Department of Microbiology, Ithaca, NY, USA'], 'affiliations': [{'raw_affiliation_string': 'Cornell University, Department of Microbiology, Ithaca, NY, USA', 'institution_ids': ['https://openalex.org/I205783295']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5066928387', 'display_name': 'Ruth M. Potrafka', 'orcid': None}, 'institutions': [{'id': 'https://openalex.org/I55732556', 'display_name': 'Arizona State University', 'ror': 'https://ror.org/03efmqc40', 'country_code': 'US', 'type': 'education', 'lineage': ['https://openalex.org/I55732556']}], 'countries': ['US'], 'is_corresponding': False, 'raw_author_name': 'Ruth Potrafka', 'raw_affiliation_strings': ['Arizona State University, School of Life Sciences, Tempe, AZ 85287, USA'], 'affiliations': [{'raw_affiliation_string': 'Arizona State University, School of Life Sciences, Tempe, AZ 85287, USA', 'institution_ids': ['https://openalex.org/I55732556']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5041001443', 'display_name': 'Cheryl P. Andam', 'orcid': 'https://orcid.org/0000-0003-4428-0924'}, 'institutions': [{'id': 'https://openalex.org/I205783295', 'display_name': 'Cornell University', 'ror': 'https://ror.org/05bnh6r87', 'country_code': 'US', 'type': 'education', 'lineage': ['https://openalex.org/I205783295']}], 'countries': ['US'], 'is_corresponding': False, 'raw_author_name': 'Cheryl Andam', 'raw_affiliation_strings': ['Cornell University, Department of Microbiology, Ithaca, NY, USA'], 'affiliations': [{'raw_affiliation_string': 'Cornell University, Department of Microbiology, Ithaca, NY, USA', 'institution_ids': ['https://openalex.org/I205783295']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5080537482', 'display_name': 'Erin M. Eggleston', 'orcid': 'https://orcid.org/0000-0002-9598-3067'}, 'institutions': [{'id': 'https://openalex.org/I205783295', 'display_name': 'Cornell University', 'ror': 'https://ror.org/05bnh6r87', 'country_code': 'US', 'type': 'education', 'lineage': ['https://openalex.org/I205783295']}], 'countries': ['US'], 'is_corresponding': False, 'raw_author_name': 'Erin Eggleston', 'raw_affiliation_strings': ['Cornell University, Department of Microbiology, Ithaca, NY, USA'], 'affiliations': [{'raw_affiliation_string': 'Cornell University, Department of Microbiology, Ithaca, NY, USA', 'institution_ids': ['https://openalex.org/I205783295']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5089371396', 'display_name': 'Ferrán García‐Pichel', 'orcid': 'https://orcid.org/0000-0003-1383-1981'}, 'institutions': [{'id': 'https://openalex.org/I55732556', 'display_name': 'Arizona State University', 'ror': 'https://ror.org/03efmqc40', 'country_code': 'US', 'type': 'education', 'lineage': ['https://openalex.org/I55732556']}], 'countries': ['US'], 'is_corresponding': False, 'raw_author_name': 'Ferran Garcia-Pichel', 'raw_affiliation_strings': ['Arizona State University, School of Life Sciences, Tempe, AZ 85287, USA'], 'affiliations': [{'raw_affiliation_string': 'Arizona State University, School of Life Sciences, Tempe, AZ 85287, USA', 'institution_ids': ['https://openalex.org/I55732556']}]}, {'author_position': 'last', 'author': {'id': 'https://openalex.org/A5023442989', 'display_name': 'Daniel H. Buckley', 'orcid': 'https://orcid.org/0000-0003-1654-2907'}, 'institutions': [{'id': 'https://openalex.org/I205783295', 'display_name': 'Cornell University', 'ror': 'https://ror.org/05bnh6r87', 'country_code': 'US', 'type': 'education', 'lineage': ['https://openalex.org/I205783295']}], 'countries': ['US'], 'is_corresponding': False, 'raw_author_name': 'Daniel H Buckley', 'raw_affiliation_strings': ['Cornell University, Department of Crop and Soil Sciences, Ithaca, NY, USA'], 'affiliations': [{'raw_affiliation_string': 'Cornell University, Department of Crop and Soil Sciences, Ithaca, NY, USA', 'institution_ids': ['https://openalex.org/I205783295']}]}], 'institution_assertions': [], 'countries_distinct_count': 1, 'institutions_distinct_count': 2, 'corresponding_author_ids': [], 'corresponding_institution_ids': [], 'apc_list': None, 'apc_paid': None, 'fwci': None, 'has_fulltext': True, 'fulltext_origin': 'pdf', 'cited_by_count': 3, 'citation_normalized_percentile': {'value': 0.940492, 'is_in_top_1_percent': False, 'is_in_top_10_percent': True}, 'cited_by_percentile_year': {'min': 76, 'max': 79}, 'biblio': {'volume': None, 'issue': None, 'first_page': None, 'last_page': None}, 'is_retracted': False, 'is_paratext': False, 'primary_topic': {'id': 'https://openalex.org/T12832', 'display_name': 'Biocrusts and Microbial Ecology', 'score': 0.9999, 'subfield': {'id': 'https://openalex.org/subfields/1105', 'display_name': 'Ecology, Evolution, Behavior and Systematics'}, 'field': {'id': 'https://openalex.org/fields/11', 'display_name': 'Agricultural and Biological Sciences'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}, 'topics': [{'id': 'https://openalex.org/T12832', 'display_name': 'Biocrusts and Microbial Ecology', 'score': 0.9999, 'subfield': {'id': 'https://openalex.org/subfields/1105', 'display_name': 'Ecology, Evolution, Behavior and Systematics'}, 'field': {'id': 'https://openalex.org/fields/11', 'display_name': 'Agricultural and Biological Sciences'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}, {'id': 'https://openalex.org/T10236', 'display_name': 'Aquatic Ecosystems and Phytoplankton Dynamics', 'score': 0.9963, 'subfield': {'id': 'https://openalex.org/subfields/2304', 'display_name': 'Environmental Chemistry'}, 'field': {'id': 'https://openalex.org/fields/23', 'display_name': 'Environmental Science'}, 'domain': {'id': 'https://openalex.org/domains/3', 'display_name': 'Physical Sciences'}}, {'id': 'https://openalex.org/T10476', 'display_name': 'Algal biology and biofuel production', 'score': 0.9929, 'subfield': {'id': 'https://openalex.org/subfields/2105', 'display_name': 'Renewable Energy, Sustainability and the Environment'}, 'field': {'id': 'https://openalex.org/fields/21', 'display_name': 'Energy'}, 'domain': {'id': 'https://openalex.org/domains/3', 'display_name': 'Physical Sciences'}}], 'keywords': [], 'concepts': [{'id': 'https://openalex.org/C145244307', 'wikidata': 'https://www.wikidata.org/wiki/Q902470', 'display_name': 'Diazotroph', 'level': 4, 'score': 0.8796931}, {'id': 'https://openalex.org/C2776698055', 'wikidata': 'https://www.wikidata.org/wiki/Q4232578', 'display_name': 'Crust', 'level': 2, 'score': 0.78839743}, {'id': 'https://openalex.org/C2779669040', 'wikidata': 'https://www.wikidata.org/wiki/Q93315', 'display_name': 'Cyanobacteria', 'level': 3, 'score': 0.59718585}, {'id': 'https://openalex.org/C181440489', 'wikidata': 'https://www.wikidata.org/wiki/Q272467', 'display_name': 'Nitrogen fixation', 'level': 3, 'score': 0.50077367}, {'id': 'https://openalex.org/C17409809', 'wikidata': 'https://www.wikidata.org/wiki/Q161764', 'display_name': 'Geochemistry', 'level': 1, 'score': 0.46348315}, {'id': 'https://openalex.org/C127313418', 'wikidata': 'https://www.wikidata.org/wiki/Q1069', 'display_name': 'Geology', 'level': 0, 'score': 0.44902265}, {'id': 'https://openalex.org/C1965285', 'wikidata': 'https://www.wikidata.org/wiki/Q8008', 'display_name': 'Earth science', 'level': 1, 'score': 0.447565}, {'id': 'https://openalex.org/C146249460', 'wikidata': 'https://www.wikidata.org/wiki/Q2914991', 'display_name': 'Fixation (population genetics)', 'level': 3, 'score': 0.4370467}, {'id': 'https://openalex.org/C39432304', 'wikidata': 'https://www.wikidata.org/wiki/Q188847', 'display_name': 'Environmental science', 'level': 0, 'score': 0.36165753}, {'id': 'https://openalex.org/C185592680', 'wikidata': 'https://www.wikidata.org/wiki/Q2329', 'display_name': 'Chemistry', 'level': 0, 'score': 0.27126265}, {'id': 'https://openalex.org/C151730666', 'wikidata': 'https://www.wikidata.org/wiki/Q7205', 'display_name': 'Paleontology', 'level': 1, 'score': 0.05678433}, {'id': 'https://openalex.org/C523546767', 'wikidata': 'https://www.wikidata.org/wiki/Q10876', 'display_name': 'Bacteria', 'level': 2, 'score': 0.053762227}, {'id': 'https://openalex.org/C55493867', 'wikidata': 'https://www.wikidata.org/wiki/Q7094', 'display_name': 'Biochemistry', 'level': 1, 'score': 0.0}, {'id': 'https://openalex.org/C104317684', 'wikidata': 'https://www.wikidata.org/wiki/Q7187', 'display_name': 'Gene', 'level': 2, 'score': 0.0}], 'mesh': [], 'locations_count': 2, 'locations': [{'is_oa': True, 'landing_page_url': 'https://doi.org/10.1101/013813', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S4306402567', 'display_name': 'bioRxiv (Cold Spring Harbor Laboratory)', 'issn_l': None, 'issn': None, 'is_oa': True, 'is_in_doaj': False, 'is_core': False, 'host_organization': 'https://openalex.org/I2750212522', 'host_organization_name': 'Cold Spring Harbor Laboratory', 'host_organization_lineage': ['https://openalex.org/I2750212522'], 'host_organization_lineage_names': ['Cold Spring Harbor Laboratory'], 'type': 'repository'}, 'license': 'cc-by-nc-nd', 'license_id': 'https://openalex.org/licenses/cc-by-nc-nd', 'version': 'submittedVersion', 'is_accepted': False, 'is_published': False}, {'is_oa': True, 'landing_page_url': 'https://doi.org/10.1038/ismej.2015.106', 'pdf_url': 'https://www.nature.com/articles/ismej2015106.pdf', 'source': None, 'license': None, 'license_id': None, 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}], 'best_oa_location': {'is_oa': True, 'landing_page_url': 'https://doi.org/10.1101/013813', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S4306402567', 'display_name': 'bioRxiv (Cold Spring Harbor Laboratory)', 'issn_l': None, 'issn': None, 'is_oa': True, 'is_in_doaj': False, 'is_core': False, 'host_organization': 'https://openalex.org/I2750212522', 'host_organization_name': 'Cold Spring Harbor Laboratory', 'host_organization_lineage': ['https://openalex.org/I2750212522'], 'host_organization_lineage_names': ['Cold Spring Harbor Laboratory'], 'type': 'repository'}, 'license': 'cc-by-nc-nd', 'license_id': 'https://openalex.org/licenses/cc-by-nc-nd', 'version': 'submittedVersion', 'is_accepted': False, 'is_published': False}, 'sustainable_development_goals': [{'display_name': 'Life on land', 'score': 0.6, 'id': 'https://metadata.un.org/sdg/15'}], 'grants': [], 'datasets': [], 'versions': [], 'referenced_works_count': 62, 'referenced_works': ['https://openalex.org/W1195638280', 'https://openalex.org/W1587026990', 'https://openalex.org/W1589881346', 'https://openalex.org/W1777937455', 'https://openalex.org/W1797440778', 'https://openalex.org/W1886096157', 'https://openalex.org/W1976943723', 'https://openalex.org/W2000238655', 'https://openalex.org/W2002669907', 'https://openalex.org/W2004014148', 'https://openalex.org/W2021668553', 'https://openalex.org/W2030154486', 'https://openalex.org/W2031611770', 'https://openalex.org/W2034836118', 'https://openalex.org/W2040422637', 'https://openalex.org/W2068081768', 'https://openalex.org/W2069583738', 'https://openalex.org/W2071252617', 'https://openalex.org/W2071677533', 'https://openalex.org/W2072970694', 'https://openalex.org/W2076855796', 'https://openalex.org/W2080850803', 'https://openalex.org/W208631555', 'https://openalex.org/W2088833470', 'https://openalex.org/W2091922579', 'https://openalex.org/W2095885321', 'https://openalex.org/W2101903615', 'https://openalex.org/W2108718991', 'https://openalex.org/W2110065044', 'https://openalex.org/W2113584692', 'https://openalex.org/W2114794883', 'https://openalex.org/W2114850508', 'https://openalex.org/W2115131246', 'https://openalex.org/W2121918723', 'https://openalex.org/W2122121924', 'https://openalex.org/W2124351063', 'https://openalex.org/W2127619164', 'https://openalex.org/W2134136881', 'https://openalex.org/W2136328914', 'https://openalex.org/W2141152740', 'https://openalex.org/W2142678478', 'https://openalex.org/W2143980572', 'https://openalex.org/W2144011261', 'https://openalex.org/W2147618390', 'https://openalex.org/W2147705484', 'https://openalex.org/W2149746980', 'https://openalex.org/W2150605939', 'https://openalex.org/W2161163382', 'https://openalex.org/W2168783806', 'https://openalex.org/W2179438025', 'https://openalex.org/W2409570981', 'https://openalex.org/W2478173217', 'https://openalex.org/W2491142891', 'https://openalex.org/W25313398', 'https://openalex.org/W2950796920', 'https://openalex.org/W4210998485', 'https://openalex.org/W4230096730', 'https://openalex.org/W4242702784', 'https://openalex.org/W4253202544', 'https://openalex.org/W4399570526', 'https://openalex.org/W47225667', 'https://openalex.org/W747599189'], 'related_works': ['https://openalex.org/W4223925598', 'https://openalex.org/W3174457593', 'https://openalex.org/W3002011563', 'https://openalex.org/W2966996762', 'https://openalex.org/W2949106888', 'https://openalex.org/W244096736', 'https://openalex.org/W2385140805', 'https://openalex.org/W2165990360', 'https://openalex.org/W2061049719', 'https://openalex.org/W1522445679'], 'abstract_inverted_index': {'1': [0], 'ABSTRACT': [1], 'Biological': [2], 'soil': [3], 'crusts': [4, 57], '(BSC)': [5], 'are': [6, 98, 115], 'key': [7], 'components': [8], 'of': [9, 21, 38, 81, 163, 188, 207], 'ecosystem': [10], 'productivity': [11], 'in': [12, 108, 129, 167, 183, 209], 'arid': [13, 39, 210], 'lands': [14], 'and': [15, 64, 96, 157, 186, 204], 'they': [16, 172], 'cover': [17], 'a': [18, 180, 192], 'substantial': [19], 'fraction': [20], 'the': [22, 34, 77, 99, 202], 'terrestrial': [23], 'surface.': [24], 'In': [25, 42], 'particular,': [26], 'BSC': [27, 82, 168, 184, 208], 'N': [28, 45, 60, 73, 91, 106, 122], '2': [29, 46, 61, 74, 92, 107, 123], '-fixation': [30, 47, 75], 'contributes': [31], 'significantly': [32], 'to': [33, 51, 147], 'nitrogen': [35], '(N)': [36], 'budget': [37], 'land': [40], 'ecosystems.': [41, 211], 'mature': [43], 'crusts,': [44], 'is': [48], 'largely': [49], 'attributed': [50], 'heterocystous': [52], 'cyanobacteria,': [53], 'however,': [54], 'early': [55, 79, 109], 'successional': [56, 110], 'possess': [58, 148], 'few': [59], '-fixing': [62], 'cyanobacteria': [63, 71], 'this': [65, 130], 'suggests': [66], 'that': [67, 94, 103], 'microorganisms': [68, 102], 'other': [69], 'than': [70], 'mediate': [72], 'during': [76], 'critical': [78, 181], 'stages': [80], 'development.': [83], 'DNA': [84], 'stable': [85], 'isotope': [86], 'probing': [87], '(DNA-SIP)': [88], 'with': [89, 142], '15': [90, 105], 'revealed': [93], 'Clostridiaceae': [95, 113], 'Proteobacteria': [97, 133], 'most': [100], 'common': [101], 'assimilate': [104], 'crusts.': [111], 'The': [112, 132, 160], 'identified': [114, 134], 'divergent': [116], 'from': [117, 144], 'previously': [118, 126], 'characterized': [119, 176], 'isolates,': [120], 'though': [121], 'fixation': [124], 'has': [125], 'been': [127, 175], 'observed': [128], 'family.': [131], 'share': [135], '&gt;98.5': [136], '%SSU': [137], 'rRNA': [138], 'gene': [139], 'sequence': [140], 'identity': [141], 'isolates': [143], 'genera': [145], 'known': [146], 'diazotrophs': [149, 166], '(e.g.': [150], 'Pseudomonas': [151], ',': [152, 154, 156], 'Klebsiella': [153], 'Shigella': [155], 'Ideonella': [158], ').': [159], 'low': [161], 'abundance': [162], 'these': [164, 189], 'heterotrophic': [165], 'may': [169], 'explain': [170], 'why': [171], 'have': [173], 'not': [174], 'previously.': [177], 'Diazotrophs': [178], 'play': [179], 'role': [182], 'formation': [185, 203], 'characterization': [187], 'organisms': [190], 'represents': [191], 'crucial': [193], 'step': [194], 'towards': [195], 'understanding': [196], 'how': [197], 'anthropogenic': [198], 'change': [199], 'will': [200], 'affect': [201], 'ecological': [205], 'function': [206]}, 'cited_by_api_url': 'https://api.openalex.org/works?filter=cites:W2178056883', 'counts_by_year': [{'year': 2017, 'cited_by_count': 2}], 'updated_date': '2024-12-10T10:06:25.053583', 'created_date': '2016-06-24'}
Publication Information

Basic Information

Access and Citation

AI Researcher Chatbot

Primary Location

Authors

Topics

Keywords

Related Works
