Sequence Specific Dihedral Angle Distribution: Application in Protein Structure Prediction and Evaluation

Name: Work Video:
Duration: 3 min 30 s
S. M. Minhaz Ud-Dean; Mahdi Muhammad Moosa
{'id': 'https://openalex.org/W2164993354', 'doi': 'https://doi.org/10.3329/ptcb.v19i2.5439', 'title': 'Sequence Specific Dihedral Angle Distribution: Application in Protein Structure Prediction and Evaluation', 'display_name': 'Sequence Specific Dihedral Angle Distribution: Application in Protein Structure Prediction and Evaluation', 'publication_year': 1970, 'publication_date': '1970-01-01', 'ids': {'openalex': 'https://openalex.org/W2164993354', 'doi': 'https://doi.org/10.3329/ptcb.v19i2.5439', 'mag': '2164993354'}, 'language': 'en', 'primary_location': {'is_oa': True, 'landing_page_url': 'https://doi.org/10.3329/ptcb.v19i2.5439', 'pdf_url': 'https://www.banglajol.info/index.php/PTCB/article/download/5439/4251', 'source': {'id': 'https://openalex.org/S44639030', 'display_name': 'Plant Tissue Culture and Biotechnology', 'issn_l': '1817-3721', 'issn': ['1817-3721', '1818-8745'], 'is_oa': True, 'is_in_doaj': False, 'is_core': True, 'host_organization': None, 'host_organization_name': None, 'host_organization_lineage': [], 'host_organization_lineage_names': [], 'type': 'journal'}, 'license': None, 'license_id': None, 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, 'type': 'article', 'type_crossref': 'journal-article', 'indexed_in': ['crossref'], 'open_access': {'is_oa': True, 'oa_status': 'bronze', 'oa_url': 'https://www.banglajol.info/index.php/PTCB/article/download/5439/4251', 'any_repository_has_fulltext': False}, 'authorships': [{'author_position': 'first', 'author': {'id': 'https://openalex.org/A5068439492', 'display_name': 'S. M. Minhaz Ud-Dean', 'orcid': None}, 'institutions': [{'id': 'https://openalex.org/I205746353', 'display_name': 'University of Dhaka', 'ror': 'https://ror.org/05wv2vq37', 'country_code': 'BD', 'type': 'education', 'lineage': ['https://openalex.org/I205746353']}], 'countries': ['BD'], 'is_corresponding': False, 'raw_author_name': 'S. M. Minhaz Ud-Dean', 'raw_affiliation_strings': ['Department of Genetic Engineering and Biotechnology, University of Dhaka,'], 'affiliations': [{'raw_affiliation_string': 'Department of Genetic Engineering and Biotechnology, University of Dhaka,', 'institution_ids': ['https://openalex.org/I205746353']}]}, {'author_position': 'last', 'author': {'id': 'https://openalex.org/A5021026285', 'display_name': 'Mahdi Muhammad Moosa', 'orcid': 'https://orcid.org/0000-0002-2823-3178'}, 'institutions': [{'id': 'https://openalex.org/I205746353', 'display_name': 'University of Dhaka', 'ror': 'https://ror.org/05wv2vq37', 'country_code': 'BD', 'type': 'education', 'lineage': ['https://openalex.org/I205746353']}], 'countries': ['BD'], 'is_corresponding': False, 'raw_author_name': 'Mahdi Muhammad Moosa', 'raw_affiliation_strings': ['Department of Genetic Engineering and Biotechnology, University of Dhaka,'], 'affiliations': [{'raw_affiliation_string': 'Department of Genetic Engineering and Biotechnology, University of Dhaka,', 'institution_ids': ['https://openalex.org/I205746353']}]}], 'institution_assertions': [], 'countries_distinct_count': 1, 'institutions_distinct_count': 1, 'corresponding_author_ids': [], 'corresponding_institution_ids': [], 'apc_list': None, 'apc_paid': None, 'fwci': 0.0, 'has_fulltext': False, 'cited_by_count': 0, 'citation_normalized_percentile': {'value': 0.0, 'is_in_top_1_percent': False, 'is_in_top_10_percent': False}, 'cited_by_percentile_year': {'min': 0, 'max': 60}, 'biblio': {'volume': '19', 'issue': '2', 'first_page': '217', 'last_page': '226'}, 'is_retracted': False, 'is_paratext': False, 'primary_topic': {'id': 'https://openalex.org/T11162', 'display_name': 'Enzyme Structure and Function', 'score': 0.994, 'subfield': {'id': 'https://openalex.org/subfields/2505', 'display_name': 'Materials Chemistry'}, 'field': {'id': 'https://openalex.org/fields/25', 'display_name': 'Materials Science'}, 'domain': {'id': 'https://openalex.org/domains/3', 'display_name': 'Physical Sciences'}}, 'topics': [{'id': 'https://openalex.org/T11162', 'display_name': 'Enzyme Structure and Function', 'score': 0.994, 'subfield': {'id': 'https://openalex.org/subfields/2505', 'display_name': 'Materials Chemistry'}, 'field': {'id': 'https://openalex.org/fields/25', 'display_name': 'Materials Science'}, 'domain': {'id': 'https://openalex.org/domains/3', 'display_name': 'Physical Sciences'}}, {'id': 'https://openalex.org/T10602', 'display_name': 'Glycosylation and Glycoproteins Research', 'score': 0.9937, 'subfield': {'id': 'https://openalex.org/subfields/1312', 'display_name': 'Molecular Biology'}, 'field': {'id': 'https://openalex.org/fields/13', 'display_name': 'Biochemistry, Genetics and Molecular Biology'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}, {'id': 'https://openalex.org/T10044', 'display_name': 'Protein Structure and Dynamics', 'score': 0.9932, 'subfield': {'id': 'https://openalex.org/subfields/1312', 'display_name': 'Molecular Biology'}, 'field': {'id': 'https://openalex.org/fields/13', 'display_name': 'Biochemistry, Genetics and Molecular Biology'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}], 'keywords': [{'id': 'https://openalex.org/keywords/ramachandran-plot', 'display_name': 'Ramachandran plot', 'score': 0.99238414}, {'id': 'https://openalex.org/keywords/dihedral-angle', 'display_name': 'Dihedral angle', 'score': 0.9682621}, {'id': 'https://openalex.org/keywords/sequence', 'display_name': 'Sequence (biology)', 'score': 0.62836534}], 'concepts': [{'id': 'https://openalex.org/C14301744', 'wikidata': 'https://www.wikidata.org/wiki/Q579211', 'display_name': 'Ramachandran plot', 'level': 3, 'score': 0.99238414}, {'id': 'https://openalex.org/C89025888', 'wikidata': 'https://www.wikidata.org/wiki/Q911907', 'display_name': 'Dihedral angle', 'level': 4, 'score': 0.9682621}, {'id': 'https://openalex.org/C65556437', 'wikidata': 'https://www.wikidata.org/wiki/Q766195', 'display_name': 'Protein Data Bank (RCSB PDB)', 'level': 2, 'score': 0.7112899}, {'id': 'https://openalex.org/C2778112365', 'wikidata': 'https://www.wikidata.org/wiki/Q3511065', 'display_name': 'Sequence (biology)', 'level': 2, 'score': 0.62836534}, {'id': 'https://openalex.org/C47701112', 'wikidata': 'https://www.wikidata.org/wiki/Q735188', 'display_name': 'Protein structure', 'level': 2, 'score': 0.46103194}, {'id': 'https://openalex.org/C8010536', 'wikidata': 'https://www.wikidata.org/wiki/Q160398', 'display_name': 'Crystallography', 'level': 1, 'score': 0.43229017}, {'id': 'https://openalex.org/C186060115', 'wikidata': 'https://www.wikidata.org/wiki/Q30336093', 'display_name': 'Biological system', 'level': 1, 'score': 0.4265453}, {'id': 'https://openalex.org/C86803240', 'wikidata': 'https://www.wikidata.org/wiki/Q420', 'display_name': 'Biology', 'level': 0, 'score': 0.41940713}, {'id': 'https://openalex.org/C70721500', 'wikidata': 'https://www.wikidata.org/wiki/Q177005', 'display_name': 'Computational biology', 'level': 1, 'score': 0.38244593}, {'id': 'https://openalex.org/C41008148', 'wikidata': 'https://www.wikidata.org/wiki/Q21198', 'display_name': 'Computer science', 'level': 0, 'score': 0.32838112}, {'id': 'https://openalex.org/C60644358', 'wikidata': 'https://www.wikidata.org/wiki/Q128570', 'display_name': 'Bioinformatics', 'level': 1, 'score': 0.32453573}, {'id': 'https://openalex.org/C185592680', 'wikidata': 'https://www.wikidata.org/wiki/Q2329', 'display_name': 'Chemistry', 'level': 0, 'score': 0.1991399}, {'id': 'https://openalex.org/C54355233', 'wikidata': 'https://www.wikidata.org/wiki/Q7162', 'display_name': 'Genetics', 'level': 1, 'score': 0.1333969}, {'id': 'https://openalex.org/C55493867', 'wikidata': 'https://www.wikidata.org/wiki/Q7094', 'display_name': 'Biochemistry', 'level': 1, 'score': 0.106970936}, {'id': 'https://openalex.org/C112887158', 'wikidata': 'https://www.wikidata.org/wiki/Q169324', 'display_name': 'Hydrogen bond', 'level': 3, 'score': 0.0701116}, {'id': 'https://openalex.org/C178790620', 'wikidata': 'https://www.wikidata.org/wiki/Q11351', 'display_name': 'Organic chemistry', 'level': 1, 'score': 0.0}, {'id': 'https://openalex.org/C32909587', 'wikidata': 'https://www.wikidata.org/wiki/Q11369', 'display_name': 'Molecule', 'level': 2, 'score': 0.0}], 'mesh': [], 'locations_count': 1, 'locations': [{'is_oa': True, 'landing_page_url': 'https://doi.org/10.3329/ptcb.v19i2.5439', 'pdf_url': 'https://www.banglajol.info/index.php/PTCB/article/download/5439/4251', 'source': {'id': 'https://openalex.org/S44639030', 'display_name': 'Plant Tissue Culture and Biotechnology', 'issn_l': '1817-3721', 'issn': ['1817-3721', '1818-8745'], 'is_oa': True, 'is_in_doaj': False, 'is_core': True, 'host_organization': None, 'host_organization_name': None, 'host_organization_lineage': [], 'host_organization_lineage_names': [], 'type': 'journal'}, 'license': None, 'license_id': None, 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}], 'best_oa_location': {'is_oa': True, 'landing_page_url': 'https://doi.org/10.3329/ptcb.v19i2.5439', 'pdf_url': 'https://www.banglajol.info/index.php/PTCB/article/download/5439/4251', 'source': {'id': 'https://openalex.org/S44639030', 'display_name': 'Plant Tissue Culture and Biotechnology', 'issn_l': '1817-3721', 'issn': ['1817-3721', '1818-8745'], 'is_oa': True, 'is_in_doaj': False, 'is_core': True, 'host_organization': None, 'host_organization_name': None, 'host_organization_lineage': [], 'host_organization_lineage_names': [], 'type': 'journal'}, 'license': None, 'license_id': None, 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, 'sustainable_development_goals': [{'score': 0.42, 'display_name': 'Responsible consumption and production', 'id': 'https://metadata.un.org/sdg/12'}], 'grants': [], 'datasets': [], 'versions': [], 'referenced_works_count': 33, 'referenced_works': ['https://openalex.org/W1523704898', 'https://openalex.org/W1548178570', 'https://openalex.org/W1606410455', 'https://openalex.org/W1829708802', 'https://openalex.org/W1963550288', 'https://openalex.org/W1969621320', 'https://openalex.org/W1976422615', 'https://openalex.org/W1981387027', 'https://openalex.org/W1986191025', 'https://openalex.org/W2004370807', 'https://openalex.org/W2020789759', 'https://openalex.org/W2021106586', 'https://openalex.org/W2022964681', 'https://openalex.org/W2047962024', 'https://openalex.org/W2056568469', 'https://openalex.org/W2079627474', 'https://openalex.org/W2084466582', 'https://openalex.org/W2100981947', 'https://openalex.org/W2105801262', 'https://openalex.org/W2107024517', 'https://openalex.org/W2122289960', 'https://openalex.org/W2124924243', 'https://openalex.org/W2128557255', 'https://openalex.org/W2130479394', 'https://openalex.org/W2136297983', 'https://openalex.org/W2136766277', 'https://openalex.org/W2144482798', 'https://openalex.org/W2144727125', 'https://openalex.org/W2148557779', 'https://openalex.org/W2150408357', 'https://openalex.org/W2157165549', 'https://openalex.org/W2159136327', 'https://openalex.org/W64282669'], 'related_works': ['https://openalex.org/W4389024027', 'https://openalex.org/W4295897800', 'https://openalex.org/W4236871736', 'https://openalex.org/W3183750506', 'https://openalex.org/W2504812601', 'https://openalex.org/W2222296774', 'https://openalex.org/W2164993354', 'https://openalex.org/W2000232506', 'https://openalex.org/W1990760938', 'https://openalex.org/W1600511639'], 'abstract_inverted_index': {'Protein': [0], 'structure': [1, 63, 73, 118], 'prediction': [2, 61], 'and': [3, 28, 50, 62], 'evaluation': [4, 69], 'is': [5], 'one': [6], 'of': [7, 11, 15, 24, 42, 70, 82, 90], 'the': [8, 22, 36, 78, 91, 102], 'major': [9], 'fields': [10], 'computational': [12], 'biology.': [13], 'Estimation': [14], 'dihedral': [16, 39, 59], 'angle': [17, 40, 60], 'can': [18], 'provide': [19], 'information': [20], 'about': [21], 'acceptability': [23], 'both': [25], 'theoretically': [26], 'predicted': [27], 'experimentally': [29], 'determined': [30], 'structures.': [31], 'Here': [32], 'we': [33], 'report': [34], 'on': [35], 'sequence': [37, 57, 79, 99, 103, 112], 'specific': [38, 58, 80, 104, 113], 'distribution': [41, 81], 'high': [43], 'resolution': [44], 'protein': [45, 72, 117], 'structures': [46], 'available': [47], 'in': [48, 74], 'PDB': [49], 'have': [51], 'developed': [52], 'Sasichandran,': [53], 'a': [54, 71, 97], 'tool': [55, 66], 'for': [56, 96], 'evaluation.': [64], 'This': [65], 'will': [67, 87], 'allow': [68, 88], 'pdb': [75], 'format': [76], 'from': [77], 'Ramachandran': [83, 94], 'angles.': [84], 'Additionally,': [85], 'it': [86], 'retrieval': [89], 'most': [92], 'probable': [93], 'angles': [95], 'given': [98], 'along': [100], 'with': [101], 'data.': [105], 'Key': [106], 'words:': [107], 'Torsion': [108], 'angle,': [109], 'φ-ψ': [110], 'distribution,': [111], 'ramachandran': [114], 'plot,': [115], 'Ramasekharan,': [116], 'appraisal': [119], 'D.O.I.': [120], '10.3329/ptcb.v19i2.5439': [121], 'Plant': [122], 'Tissue': [123], 'Cult.': [124], '&amp;': [125], 'Biotech.': [126], '19(2):': [127], '217-226,': [128], '2009': [129], '(December)': [130]}, 'cited_by_api_url': 'https://api.openalex.org/works?filter=cites:W2164993354', 'counts_by_year': [], 'updated_date': '2024-12-13T21:19:05.708780', 'created_date': '2016-06-24'}
Publication Information

Basic Information

Access and Citation

AI Researcher Chatbot

Primary Location

Authors

Topics

Keywords

Related Works
