Publication Information

{'id': 'https://openalex.org/W2161372078', 'doi': 'https://doi.org/10.1371/journal.pone.0000094', 'title': 'A Bayesian Network Driven Approach to Model the Transcriptional Response to Nitric Oxide in Saccharomyces cerevisiae', 'display_name': 'A Bayesian Network Driven Approach to Model the Transcriptional Response to Nitric Oxide in Saccharomyces cerevisiae', 'publication_year': 2006, 'publication_date': '2006-12-20', 'ids': {'openalex': 'https://openalex.org/W2161372078', 'doi': 'https://doi.org/10.1371/journal.pone.0000094', 'mag': '2161372078', 'pmid': 'https://pubmed.ncbi.nlm.nih.gov/17183726', 'pmcid': 'https://www.ncbi.nlm.nih.gov/pmc/articles/1762306'}, 'language': 'en', 'primary_location': {'is_oa': True, 'landing_page_url': 'https://doi.org/10.1371/journal.pone.0000094', 'pdf_url': 'https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0000094&type=printable', 'source': {'id': 'https://openalex.org/S202381698', 'display_name': 'PLoS ONE', 'issn_l': '1932-6203', 'issn': ['1932-6203'], 'is_oa': True, 'is_in_doaj': True, 'is_core': True, 'host_organization': 'https://openalex.org/P4310315706', 'host_organization_name': 'Public Library of Science', 'host_organization_lineage': ['https://openalex.org/P4310315706'], 'host_organization_lineage_names': ['Public Library of Science'], 'type': 'journal'}, 'license': 'cc-by', 'license_id': 'https://openalex.org/licenses/cc-by', 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, 'type': 'article', 'type_crossref': 'journal-article', 'indexed_in': ['crossref', 'pubmed'], 'open_access': {'is_oa': True, 'oa_status': 'gold', 'oa_url': 'https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0000094&type=printable', 'any_repository_has_fulltext': True}, 'authorships': [{'author_position': 'first', 'author': {'id': 'https://openalex.org/A5059839433', 'display_name': 'Jingchun Zhu', 'orcid': 'https://orcid.org/0000-0003-4075-431X'}, 'institutions': [{'id': 'https://openalex.org/I180670191', 'display_name': 'University of California, San Francisco', 'ror': 'https://ror.org/043mz5j54', 'country_code': 'US', 'type': 'education', 'lineage': ['https://openalex.org/I180670191']}], 'countries': ['US'], 'is_corresponding': False, 'raw_author_name': 'Jingchun Zhu', 'raw_affiliation_strings': ['Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, California, United States of America'], 'affiliations': [{'raw_affiliation_string': 'Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, California, United States of America', 'institution_ids': ['https://openalex.org/I180670191']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5067072554', 'display_name': 'Ashwini Jambhekar', 'orcid': 'https://orcid.org/0000-0003-1078-6601'}, 'institutions': [{'id': 'https://openalex.org/I180670191', 'display_name': 'University of California, San Francisco', 'ror': 'https://ror.org/043mz5j54', 'country_code': 'US', 'type': 'education', 'lineage': ['https://openalex.org/I180670191']}], 'countries': ['US'], 'is_corresponding': False, 'raw_author_name': 'Ashwini Jambhekar', 'raw_affiliation_strings': ['Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, California, United States of America'], 'affiliations': [{'raw_affiliation_string': 'Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, California, United States of America', 'institution_ids': ['https://openalex.org/I180670191']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5020758633', 'display_name': 'Aaron Sarver', 'orcid': None}, 'institutions': [{'id': 'https://openalex.org/I180670191', 'display_name': 'University of California, San Francisco', 'ror': 'https://ror.org/043mz5j54', 'country_code': 'US', 'type': 'education', 'lineage': ['https://openalex.org/I180670191']}], 'countries': ['US'], 'is_corresponding': False, 'raw_author_name': 'Aaron Sarver', 'raw_affiliation_strings': ['Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, California, United States of America'], 'affiliations': [{'raw_affiliation_string': 'Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, California, United States of America', 'institution_ids': ['https://openalex.org/I180670191']}]}, {'author_position': 'last', 'author': {'id': 'https://openalex.org/A5039824565', 'display_name': 'Joseph L. DeRisi', 'orcid': 'https://orcid.org/0000-0002-4611-9205'}, 'institutions': [{'id': 'https://openalex.org/I1344073410', 'display_name': 'Howard Hughes Medical Institute', 'ror': 'https://ror.org/006w34k90', 'country_code': 'US', 'type': 'nonprofit', 'lineage': ['https://openalex.org/I1344073410']}, {'id': 'https://openalex.org/I180670191', 'display_name': 'University of California, San Francisco', 'ror': 'https://ror.org/043mz5j54', 'country_code': 'US', 'type': 'education', 'lineage': ['https://openalex.org/I180670191']}], 'countries': ['US'], 'is_corresponding': True, 'raw_author_name': 'Joseph DeRisi', 'raw_affiliation_strings': ['Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, California, United States of America', 'Howard Hughes Medical Institute, University of California San Francisco, San Francisco, California, United States of America'], 'affiliations': [{'raw_affiliation_string': 'Howard Hughes Medical Institute, University of California San Francisco, San Francisco, California, United States of America', 'institution_ids': ['https://openalex.org/I1344073410', 'https://openalex.org/I180670191']}, {'raw_affiliation_string': 'Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, California, United States of America', 'institution_ids': ['https://openalex.org/I180670191']}]}], 'institution_assertions': [], 'countries_distinct_count': 1, 'institutions_distinct_count': 2, 'corresponding_author_ids': ['https://openalex.org/A5039824565'], 'corresponding_institution_ids': ['https://openalex.org/I1344073410', 'https://openalex.org/I180670191'], 'apc_list': {'value': 1805, 'currency': 'USD', 'value_usd': 1805, 'provenance': 'doaj'}, 'apc_paid': {'value': 1805, 'currency': 'USD', 'value_usd': 1805, 'provenance': 'doaj'}, 'fwci': 0.134, 'has_fulltext': True, 'fulltext_origin': 'ngrams', 'cited_by_count': 10, 'citation_normalized_percentile': {'value': 0.529679, 'is_in_top_1_percent': False, 'is_in_top_10_percent': False}, 'cited_by_percentile_year': {'min': 82, 'max': 83}, 'biblio': {'volume': '1', 'issue': '1', 'first_page': 'e94', 'last_page': 'e94'}, 'is_retracted': False, 'is_paratext': False, 'primary_topic': {'id': 'https://openalex.org/T10621', 'display_name': 'Gene Regulatory Network Analysis', 'score': 0.998, 'subfield': {'id': 'https://openalex.org/subfields/1312', 'display_name': 'Molecular Biology'}, 'field': {'id': 'https://openalex.org/fields/13', 'display_name': 'Biochemistry, Genetics and Molecular Biology'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}, 'topics': [{'id': 'https://openalex.org/T10621', 'display_name': 'Gene Regulatory Network Analysis', 'score': 0.998, 'subfield': {'id': 'https://openalex.org/subfields/1312', 'display_name': 'Molecular Biology'}, 'field': {'id': 'https://openalex.org/fields/13', 'display_name': 'Biochemistry, Genetics and Molecular Biology'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}, {'id': 'https://openalex.org/T10932', 'display_name': 'Microbial Metabolic Engineering and Bioproduction', 'score': 0.9967, 'subfield': {'id': 'https://openalex.org/subfields/1312', 'display_name': 'Molecular Biology'}, 'field': {'id': 'https://openalex.org/fields/13', 'display_name': 'Biochemistry, Genetics and Molecular Biology'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}, {'id': 'https://openalex.org/T10887', 'display_name': 'Bioinformatics and Genomic Networks', 'score': 0.9944, 'subfield': {'id': 'https://openalex.org/subfields/1312', 'display_name': 'Molecular Biology'}, 'field': {'id': 'https://openalex.org/fields/13', 'display_name': 'Biochemistry, Genetics and Molecular Biology'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}], 'keywords': [{'id': 'https://openalex.org/keywords/dynamic-bayesian-network', 'display_name': 'Dynamic Bayesian network', 'score': 0.5863283}, {'id': 'https://openalex.org/keywords/gene-regulatory-network', 'display_name': 'Gene regulatory network', 'score': 0.53296924}], 'concepts': [{'id': 'https://openalex.org/C2777576037', 'wikidata': 'https://www.wikidata.org/wiki/Q719725', 'display_name': 'Saccharomyces cerevisiae', 'level': 3, 'score': 0.7482206}, {'id': 'https://openalex.org/C33724603', 'wikidata': 'https://www.wikidata.org/wiki/Q812540', 'display_name': 'Bayesian network', 'level': 2, 'score': 0.6597206}, {'id': 'https://openalex.org/C82142266', 'wikidata': 'https://www.wikidata.org/wiki/Q3456604', 'display_name': 'Dynamic Bayesian network', 'level': 3, 'score': 0.5863283}, {'id': 'https://openalex.org/C67339327', 'wikidata': 'https://www.wikidata.org/wiki/Q1502576', 'display_name': 'Gene regulatory network', 'level': 4, 'score': 0.53296924}, {'id': 'https://openalex.org/C70721500', 'wikidata': 'https://www.wikidata.org/wiki/Q177005', 'display_name': 'Computational biology', 'level': 1, 'score': 0.5207222}, {'id': 'https://openalex.org/C27153228', 'wikidata': 'https://www.wikidata.org/wiki/Q3787274', 'display_name': 'Transcriptional regulation', 'level': 4, 'score': 0.5141519}, {'id': 'https://openalex.org/C107673813', 'wikidata': 'https://www.wikidata.org/wiki/Q812534', 'display_name': 'Bayesian probability', 'level': 2, 'score': 0.512694}, {'id': 'https://openalex.org/C519581460', 'wikidata': 'https://www.wikidata.org/wiki/Q207843', 'display_name': 'Nitric oxide', 'level': 2, 'score': 0.50996196}, {'id': 'https://openalex.org/C186310378', 'wikidata': 'https://www.wikidata.org/wiki/Q941796', 'display_name': 'Psychological repression', 'level': 4, 'score': 0.49434948}, {'id': 'https://openalex.org/C41008148', 'wikidata': 'https://www.wikidata.org/wiki/Q21198', 'display_name': 'Computer science', 'level': 0, 'score': 0.4629406}, {'id': 'https://openalex.org/C86803240', 'wikidata': 'https://www.wikidata.org/wiki/Q420', 'display_name': 'Biology', 'level': 0, 'score': 0.42082506}, {'id': 'https://openalex.org/C60644358', 'wikidata': 'https://www.wikidata.org/wiki/Q128570', 'display_name': 'Bioinformatics', 'level': 1, 'score': 0.352678}, {'id': 'https://openalex.org/C119857082', 'wikidata': 'https://www.wikidata.org/wiki/Q2539', 'display_name': 'Machine learning', 'level': 1, 'score': 0.3419037}, {'id': 'https://openalex.org/C95444343', 'wikidata': 'https://www.wikidata.org/wiki/Q7141', 'display_name': 'Cell biology', 'level': 1, 'score': 0.3287148}, {'id': 'https://openalex.org/C186060115', 'wikidata': 'https://www.wikidata.org/wiki/Q30336093', 'display_name': 'Biological system', 'level': 1, 'score': 0.3248415}, {'id': 'https://openalex.org/C154945302', 'wikidata': 'https://www.wikidata.org/wiki/Q11660', 'display_name': 'Artificial intelligence', 'level': 1, 'score': 0.30578014}, {'id': 'https://openalex.org/C150194340', 'wikidata': 'https://www.wikidata.org/wiki/Q26972', 'display_name': 'Gene expression', 'level': 3, 'score': 0.29651242}, {'id': 'https://openalex.org/C104317684', 'wikidata': 'https://www.wikidata.org/wiki/Q7187', 'display_name': 'Gene', 'level': 2, 'score': 0.29247075}, {'id': 'https://openalex.org/C54355233', 'wikidata': 'https://www.wikidata.org/wiki/Q7162', 'display_name': 'Genetics', 'level': 1, 'score': 0.2584905}, {'id': 'https://openalex.org/C134018914', 'wikidata': 'https://www.wikidata.org/wiki/Q162606', 'display_name': 'Endocrinology', 'level': 1, 'score': 0.0}], 'mesh': [{'descriptor_ui': 'D008954', 'descriptor_name': 'Models, Biological', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': True}, {'descriptor_ui': 'D009569', 'descriptor_name': 'Nitric Oxide', 'qualifier_ui': 'Q000494', 'qualifier_name': 'pharmacology', 'is_major_topic': True}, {'descriptor_ui': 'D012441', 'descriptor_name': 'Saccharomyces cerevisiae', 'qualifier_ui': 'Q000235', 'qualifier_name': 'genetics', 'is_major_topic': True}, {'descriptor_ui': 'D012441', 'descriptor_name': 'Saccharomyces cerevisiae', 'qualifier_ui': 'Q000187', 'qualifier_name': 'drug effects', 'is_major_topic': True}, {'descriptor_ui': 'D014158', 'descriptor_name': 'Transcription, Genetic', 'qualifier_ui': 'Q000187', 'qualifier_name': 'drug effects', 'is_major_topic': True}, {'descriptor_ui': 'D000465', 'descriptor_name': 'Algorithms', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D001185', 'descriptor_name': 'Artificial Intelligence', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D001499', 'descriptor_name': 'Bayes Theorem', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D049308', 'descriptor_name': 'Dioxygenases', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D049308', 'descriptor_name': 'Dioxygenases', 'qualifier_ui': 'Q000235', 'qualifier_name': 'genetics', 'is_major_topic': False}, {'descriptor_ui': 'D025461', 'descriptor_name': 'Feedback, Physiological', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D053263', 'descriptor_name': 'Gene Regulatory Networks', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D005800', 'descriptor_name': 'Genes, Fungal', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D005947', 'descriptor_name': 'Glucose', 'qualifier_ui': 'Q000378', 'qualifier_name': 'metabolism', 'is_major_topic': False}, {'descriptor_ui': 'D005947', 'descriptor_name': 'Glucose', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D005947', 'descriptor_name': 'Glucose', 'qualifier_ui': 'Q000494', 'qualifier_name': 'pharmacology', 'is_major_topic': False}, {'descriptor_ui': 'D006420', 'descriptor_name': 'Hemeproteins', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D006420', 'descriptor_name': 'Hemeproteins', 'qualifier_ui': 'Q000235', 'qualifier_name': 'genetics', 'is_major_topic': False}, {'descriptor_ui': 'D016571', 'descriptor_name': 'Neural Networks, Computer', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D009569', 'descriptor_name': 'Nitric Oxide', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D020411', 'descriptor_name': 'Oligonucleotide Array Sequence Analysis', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D011993', 'descriptor_name': 'Recombinant Fusion Proteins', 'qualifier_ui': 'Q000235', 'qualifier_name': 'genetics', 'is_major_topic': False}, {'descriptor_ui': 'D011993', 'descriptor_name': 'Recombinant Fusion Proteins', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D012441', 'descriptor_name': 'Saccharomyces cerevisiae', 'qualifier_ui': 'Q000378', 'qualifier_name': 'metabolism', 'is_major_topic': False}, {'descriptor_ui': 'D012441', 'descriptor_name': 'Saccharomyces cerevisiae', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D029701', 'descriptor_name': 'Saccharomyces cerevisiae Proteins', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D029701', 'descriptor_name': 'Saccharomyces cerevisiae Proteins', 'qualifier_ui': 'Q000235', 'qualifier_name': 'genetics', 'is_major_topic': False}, {'descriptor_ui': 'D012984', 'descriptor_name': 'Software', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D014158', 'descriptor_name': 'Transcription, Genetic', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}], 'locations_count': 4, 'locations': [{'is_oa': True, 'landing_page_url': 'https://doi.org/10.1371/journal.pone.0000094', 'pdf_url': 'https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0000094&type=printable', 'source': {'id': 'https://openalex.org/S202381698', 'display_name': 'PLoS ONE', 'issn_l': '1932-6203', 'issn': ['1932-6203'], 'is_oa': True, 'is_in_doaj': True, 'is_core': True, 'host_organization': 'https://openalex.org/P4310315706', 'host_organization_name': 'Public Library of Science', 'host_organization_lineage': ['https://openalex.org/P4310315706'], 'host_organization_lineage_names': ['Public Library of Science'], 'type': 'journal'}, 'license': 'cc-by', 'license_id': 'https://openalex.org/licenses/cc-by', 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, {'is_oa': True, 'landing_page_url': 'https://europepmc.org/articles/pmc1762306', 'pdf_url': 'https://europepmc.org/articles/pmc1762306?pdf=render', 'source': {'id': 'https://openalex.org/S4306400806', 'display_name': 'Europe PMC (PubMed Central)', 'issn_l': None, 'issn': None, 'is_oa': True, 'is_in_doaj': False, 'is_core': False, 'host_organization': 'https://openalex.org/I1303153112', 'host_organization_name': 'European Bioinformatics Institute', 'host_organization_lineage': ['https://openalex.org/I1303153112'], 'host_organization_lineage_names': ['European Bioinformatics Institute'], 'type': 'repository'}, 'license': 'cc-by', 'license_id': 'https://openalex.org/licenses/cc-by', 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, {'is_oa': True, 'landing_page_url': 'https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1762306', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S2764455111', 'display_name': 'PubMed Central', 'issn_l': None, 'issn': None, 'is_oa': True, 'is_in_doaj': False, 'is_core': False, 'host_organization': 'https://openalex.org/I1299303238', 'host_organization_name': 'National Institutes of Health', 'host_organization_lineage': ['https://openalex.org/I1299303238'], 'host_organization_lineage_names': ['National Institutes of Health'], 'type': 'repository'}, 'license': None, 'license_id': None, 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, {'is_oa': False, 'landing_page_url': 'https://pubmed.ncbi.nlm.nih.gov/17183726', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S4306525036', 'display_name': 'PubMed', 'issn_l': None, 'issn': None, 'is_oa': False, 'is_in_doaj': False, 'is_core': False, 'host_organization': 'https://openalex.org/I1299303238', 'host_organization_name': 'National Institutes of Health', 'host_organization_lineage': ['https://openalex.org/I1299303238'], 'host_organization_lineage_names': ['National Institutes of Health'], 'type': 'repository'}, 'license': None, 'license_id': None, 'version': None, 'is_accepted': False, 'is_published': False}], 'best_oa_location': {'is_oa': True, 'landing_page_url': 'https://doi.org/10.1371/journal.pone.0000094', 'pdf_url': 'https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0000094&type=printable', 'source': {'id': 'https://openalex.org/S202381698', 'display_name': 'PLoS ONE', 'issn_l': '1932-6203', 'issn': ['1932-6203'], 'is_oa': True, 'is_in_doaj': True, 'is_core': True, 'host_organization': 'https://openalex.org/P4310315706', 'host_organization_name': 'Public Library of Science', 'host_organization_lineage': ['https://openalex.org/P4310315706'], 'host_organization_lineage_names': ['Public Library of Science'], 'type': 'journal'}, 'license': 'cc-by', 'license_id': 'https://openalex.org/licenses/cc-by', 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, 'sustainable_development_goals': [], 'grants': [], 'datasets': [], 'versions': [], 'referenced_works_count': 31, 'referenced_works': ['https://openalex.org/W1517993545', 'https://openalex.org/W1566045017', 'https://openalex.org/W1603903339', 'https://openalex.org/W1615454278', 'https://openalex.org/W1746680969', 'https://openalex.org/W1991556936', 'https://openalex.org/W2008893774', 'https://openalex.org/W2027199621', 'https://openalex.org/W2051908617', 'https://openalex.org/W2061280979', 'https://openalex.org/W2066515050', 'https://openalex.org/W2073307618', 'https://openalex.org/W2073727170', 'https://openalex.org/W2100603120', 'https://openalex.org/W2101886337', 'https://openalex.org/W2108420379', 'https://openalex.org/W2113120391', 'https://openalex.org/W2117216625', 'https://openalex.org/W2125996679', 'https://openalex.org/W2136549265', 'https://openalex.org/W2137683543', 'https://openalex.org/W2150926065', 'https://openalex.org/W2159080219', 'https://openalex.org/W2165011536', 'https://openalex.org/W2167190345', 'https://openalex.org/W2169402853', 'https://openalex.org/W2169805130', 'https://openalex.org/W2170112109', 'https://openalex.org/W2611370172', 'https://openalex.org/W4211064163', 'https://openalex.org/W572500970'], 'related_works': ['https://openalex.org/W4385957992', 'https://openalex.org/W334583739', 'https://openalex.org/W2811477241', 'https://openalex.org/W2544242547', 'https://openalex.org/W2530648058', 'https://openalex.org/W2369018153', 'https://openalex.org/W2161372078', 'https://openalex.org/W2119218276', 'https://openalex.org/W2087818939', 'https://openalex.org/W1604786655'], 'abstract_inverted_index': {'The': [0, 86], 'transcriptional': [1, 36, 57, 84, 91], 'response': [2, 58], 'to': [3, 31, 59, 113], 'exogenously': [4], 'supplied': [5], 'nitric': [6, 60], 'oxide': [7, 61], 'in': [8], 'Saccharomyces': [9], 'cerevisiae': [10], 'was': [11, 29, 101, 111], 'modeled': [12], 'using': [13], 'an': [14], 'integrated': [15], 'framework': [16], 'of': [17, 35, 54, 65, 93, 121], 'Bayesian': [18, 25, 115], 'network': [19, 26, 33, 52, 116], 'learning': [20, 27], 'and': [21, 42, 62, 77, 128], 'experimental': [22, 129], 'feedback.': [23], 'A': [24, 105], 'algorithm': [28], 'used': [30], 'generate': [32], 'models': [34, 117], 'output,': [37], 'followed': [38], 'by': [39, 97], 'model': [40, 53], 'verification': [41], 'revision': [43], 'through': [44], 'experimentation.': [45], 'Using': [46], 'this': [47], 'framework,': [48], 'we': [49], 'generated': [50], 'a': [51, 63, 119], 'the': [55, 74, 82, 90], 'yeast': [56, 94], 'panel': [64], 'other': [66], 'environmental': [67, 72], 'signals.': [68], 'We': [69], 'discovered': [70], 'two': [71], 'triggers,': [73], 'diauxic': [75], 'shift': [76], 'glucose': [78, 98], 'repression,': [79, 99], 'that': [80], 'affected': [81], 'observed': [83], 'profile.': [85], 'computational': [87], 'method': [88], 'predicted': [89], 'control': [92], 'flavohemoglobin': [95], 'YHB1': [96], 'which': [100], 'subsequently': [102], 'experimentally': [103], 'verified.': [104], 'freely': [106], 'available': [107], 'software': [108], 'application,': [109], 'ExpressionNet,': [110], 'developed': [112], 'derive': [114], 'from': [118], 'combination': [120], 'gene': [122], 'expression': [123], 'profile': [124], 'clusters,': [125], 'genetic': [126], 'information': [127], 'conditions.': [130]}, 'cited_by_api_url': 'https://api.openalex.org/works?filter=cites:W2161372078', 'counts_by_year': [{'year': 2017, 'cited_by_count': 1}, {'year': 2015, 'cited_by_count': 2}, {'year': 2012, 'cited_by_count': 1}], 'updated_date': '2024-12-13T15:37:50.411471', 'created_date': '2016-06-24'}