Dynamic Proteomics Emphasizes the Importance of Selective mRNA Translation and Protein Turnover during Arabidopsis Seed Germination

Name: Work Video:
Duration: 3 min 30 s
Marc Galland; Romain Huguet; Erwann Arc; Gwendal Cueff; Dominique Job; Loïc Rajjou
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3520, 3780, 4186], 'germination,': [2, 53, 276, 327, 681, 2031], 'the': [3, 43, 49, 70, 74, 77, 92, 98, 120, 170, 187, 213, 241, 248, 264, 277, 317, 323, 344, 348, 351, 366, 372, 394, 444, 461, 487, 515, 522, 538, 555, 598, 674, 691, 780, 881, 884, 889, 893, 898, 909, 927, 937, 950, 958, 963, 1008, 1012, 1034, 1049, 1058, 1102, 1258, 1351, 1424, 1511, 1637, 1648, 1655, 1670, 1676, 1743, 1949, 1954, 2033, 2059, 2092, 2097, 2183, 2210, 2250, 2258, 2276, 2285, 2367, 2493, 2599, 2604, 2640, 2732, 2801, 2862, 2922, 3299, 3442, 3491, 3498, 3513, 3518, 3539, 3542, 3557, 3562, 3570, 3575, 3588, 3600, 3686, 3739, 3746, 3754, 3761, 3767, 3871, 3921, 3933, 3976, 4027, 4061, 4066, 4071, 4084, 4136, 4162, 4171, 4177], 'transition': [4, 278, 566, 882, 1014, 1638], 'from': [5, 279, 567, 883, 957, 1639, 1929, 1995, 2124, 2540, 2762, 3114, 3371, 3722, 4135], 'a': [6, 11, 16, 21, 39, 145, 180, 234, 280, 285, 290, 295, 313, 419, 454, 508, 551, 564, 568, 571, 607, 757, 790, 841, 905, 953, 980, 1003, 1109, 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3177, 3812, 4003], 'processing': [1834, 2342, 3813, 4004], 'organelle': [1836, 2344, 3815, 4006], 'are': [1839, 1927, 2347, 3818, 4009], 'essential': [1840, 2348, 3819, 4010], 'Arabidopsis.Plant': [1844, 2352, 3823, 4014], '157:': [1847, 2355, 3826, 4017], '1342-1362Crossref': [1848, 2356, 3827, 4018], '(108)': [1851, 1908, 2359, 3830, 4021], '19Dekkers': [1854], 'B.J.': [1855], 'Pearce': [1856], 'van': [1858], 'Bolderen-Veldkamp': [1859], 'R.P.': [1860], 'Marshall': [1861], 'Widera': [1863], 'Gilbert': [1865], 'Drost': [1867], 'H.G.': [1868], 'Müller': [1871], 'King': [1873], 'J.R.': [1874], 'Wood': [1875], 'A.T.': [1876], 'Grosse': [1877], 'Quint': [1879], 'Krasnogor': [1881], 'Leubner-Metzger': [1883], 'G.': [1884, 2145, 2200, 3706], 'Bentsink': [1887], 'Transcriptional': [1889], 'two': [1892, 3143, 3894], 'compartments': [1894], 'opposing': [1896], 'germination.Plant': [1901, 1963, 2106, 2613, 2768], '2013;': [1903], '163:': [1904], '205-215Crossref': [1905], 'Proteomic': [1911, 1989, 2637], 'studies': [1912], 'disclosed': [1913], 'only': [1915], 'required': [1919], 'protrusion,': [1922], 'indicating': [1923], 'proteins': [1926, 1993, 2256, 2459, 2577, 2761, 3475, 3482, 3531, 3579, 3721], 'translated': [1928], 'mRNAs': [1931, 1961, 1997, 2104, 2254, 2611, 2764], '(20Rajjou': [1932, 2582], 'Vandekerckhove': [1938, 2081, 2588, 2957], 'effect': [1945, 2088, 2595, 2641, 2730], 'alpha-amanitin': [1947, 2090, 2597], 'proteome': [1952, 2095, 2162, 2218, 2602, 3521, 3763, 4187], 'highlights': [1953, 2096, 2275, 2603], 'distinct': [1955, 2098, 2605], '134:': [1966, 2109, 2616], '1598-1613Crossref': [1967, 2110, 2617], '(299)': [1970, 2113, 2620], '21Sano': [1973], 'Permana': [1975], 'Kumada': [1977], 'Tanabata': [1981], 'Yamada': [1983], 'Hirasawa': [1985], 'Kanekatsu': [1987], 'synthesized': [1994, 2270, 3530, 3749, 3770], 'long-lived': [1996, 2015], 'rice': [2001], 'seeds.Plant': [2002], 'Cell': [2003], '53:': [2006], '687-698Crossref': [2007], '(66)': [2010], 'Thus,': [2013], 'these': [2014, 2311, 3593], 'were': [2022, 2389, 2396, 2473, 2986, 3051, 3150, 3199, 3302, 3358, 3408, 3446, 3461, 3479, 3508, 3597, 3884, 3889, 4058, 4074, 4090, 4149, 4202], 'proposed': [2023], 'play': [2025], 'role': [2028, 2864], 'emphasizing': [2032], 'significance': [2034], 'post-transcriptional': [2036], 'controls': [2039], '(16Kimura': [2040], '20Rajjou': [2075], '22Dure': [2116], 'Waters': [2118], 'Long-lived': [2120], 'messenger': [2121], 'RNA:': [2122], 'evidence': [2123, 2784], 'cotton': [2125], 'germination.Science.': [2127], '1965;': [2128], '147:': [2129], '410-412Crossref': [2130], '23Arc': [2134], 'Chibani': [2136, 3003, 3072, 3221, 3319], 'Godin': [2142, 2201, 3001, 3070, 3219, 3317], 'Cueff': [2144, 2199], 'Valot': [2146], 'Balliau': [2148], 'Cold': [2154], 'stratification': [2155], 'exogenous': [2157], 'nitrates': [2158], 'entail': [2159], 'similar': [2160], 'adjustments': [2163], 'release.J.': [2168], 'Proteome': [2169], '11:': [2172, 2231], '5418-5432Crossref': [2173], '(29)': [2176], 'proteomic': [2180, 2243, 2312, 4124], 'underlined': [2182], "proteome's": [2185], 'diversity': [2186], 'post-translational': [2192, 2215], 'modifications': [2194, 2216], '(24Arc': [2195], 'Galland': [2197], 'Lounifi': [2203], 'Reboot': [2209], 'system': [2211, 3660], 'diversity:': [2219], 'restart': [2223], 'their': [2224, 2265, 3584, 4080], 'prepare': [2227], 'establishment.Proteomics.': [2229], '1606-1618Crossref': [2232], '(72)': [2235], 'To': [2238, 2291, 2456], 'date,': [2239], 'differential': [2240, 2302], 'experiments': [2244], 'provided': [2246], 'overview': [2248], 'accumulation': [2251, 2807], 'process,': [2260], 'distinction': [2263], 'counterparts.': [2271], 'present': [2273, 3886], 'study': [2274], 'end,': [2293], 'employed': [2295], 'combined': [2297], 'approach': [2298], 'involving': [2299], 'proteomics.': [2307], 'integration': [2309], 'results': [2313], 'publicly': [2315], 'available': [2316, 3522], '(18Narsai': [2319, 3790, 3981], 'Scholar)': [2361, 2699, 3734], 'original': [2364], 'perspective': [2365], 'contribution': [2368], 'Nondormant': [2380], 'thaliana,': [2384], 'accession': [2385, 4138], '(Ler),': [2388], 'used': [2390, 2515, 2572, 3736], 'all': [2392], 'experiments.': [2393], 'assays': [2395], 'carried': [2397, 3422, 4130], 'out': [2398, 3423, 4131], '25': [2400], '°C,': [2401], '48': [2406, 2490, 2564], 'h': [2407, 2491], 'continuous': [2409], 'light': [2410], 'sheets': [2413], 'absorbent': [2415], 'paper': [2416, 2418], '(Roundfilter': [2417], 'circles,': [2419], '45-mm': [2420, 2438], 'diameter,': [2421, 2439], 'Schleicher': [2422, 2440], '&': [2423, 2441], 'Schuell,': [2424], 'Dassel,': [2425], 'Germany)': [2426], 'black': [2429], 'membrane': [2430], 'filter': [2431], 'white': [2434], 'grid': [2435], '(ME': [2436], '25/31,': [2437], 'Schuell)': [2442], 'wetted': [2443], '1.3': [2445], 'ml': [2446], 'distilled': [2448], 'covered': [2451], 'plastic': [2452], 'boxes': [2453], '(50-mm': [2454], 'diameter).': [2455], 'label': [2457, 2575], 'vivo,': [2461], 'six': [2462], 'lots': [2464], '(50': [2465], 'mg;': [2466], 'approximately': [2467], '2,800': [2468], 'seeds;': [2469], 'biological': [2471], 'replicates)': [2472], 'imbibe': [2476], 'for,': [2477, 3963], 'respectively,': [2478, 3949, 3964, 4166], '8': [2479, 2508, 2543, 2545, 3954, 4057], 'h,': [2480, 2482, 2484, 2486, 2488, 2544, 2548, 2552, 2556, 2560, 2565], '16': [2481, 2547, 2549], '24': [2483, 2551, 2553], '32': [2485, 2555, 2557, 4154], '40': [2487, 2559, 2562], '[35S]-Met': [2496], '(1.85': [2497], 'MBq;': [2498], 'MP': [2499], 'Biomedicals': [2500], 'SARL,': [2501], 'Illkirch,': [2502], 'France)': [2503], 'hours': [2509, 3256], '(HAI)': [2512], '1The': [2513], 'abbreviations': [2514], 'are:HAIhours': [2516], 'imbibition2DEtwo-dimensional': [2518], 'gel': [2519, 3204, 3260], 'electrophoresisAdoMetS-adenosylmethionineAGIArabidopsis': [2520], 'Gene': [2521, 3264, 3945], 'IndexENOenolaseERendoplasmic': [2522], 'reticulumFERferritinGABAγ-aminobutyrateGLYRglyoxylate': [2523], 'reductaseLerLandsberg': [2524], 'erectaLC-MS/MSliquid': [2525], 'chromatography-tandem': [2526, 3276], 'mass': [2527, 3277], 'spectrometryMDARmonodehydroascorbate': [2528], 'reductasePBPPYK10-binding': [2529], 'proteinPDIprotein': [2530], 'disulfide': [2531, 3284], 'isomeraseROSreactive': [2532], 'oxygen': [2533, 3287], 'speciesSSPseed': [2534], 'storage': [2535, 3290, 3454], 'proteinTCAtricarboxylic': [2536], 'acidTHFtetrahydrofolateTPPtripeptidyl': [2537], 'peptidase.': [2538, 3296], '(i.e.': [2539], '0': [2541, 4043], 'respectively).': [2566], 'Radioactive': [2567], 'Met': [2568, 2788, 2804, 2812], '([35S]-Met)': [2569], 'successfully': [2573], 'germinating': [2579], '25Rajjou': [2623], 'Belghazi': [2625, 2670, 2993, 3062, 3211, 3309], 'Huguet': [2627], 'Robin': [2629], 'Moreau': [2631], 'investigation': [2638], 'salicylic': [2643], 'establishment': [2650, 3786], 'defense': [2653], 'mechanisms.Plant': [2654], '2006;': [2656], '141:': [2657], '910-923Crossref': [2658], '26Rajjou': [2664], 'Lovigny': [2666], 'Proteome-wide': [2676], 'aging': [2680, 2689], 'Arabidopsis:': [2682], 'comparison': [2684, 3511], 'artificial': [2686], 'protocols.Plant': [2690], '148:': [2693], '620-641Crossref': [2694], '(261)': [2697], 'other': [2702], '(e.g.': [2704], '27Cuming': [2705], 'A.C.': [2706], 'Lane': [2707], 'B.G.': [2708], 'Protein': [2709, 3197, 3680], 'imbibing': [2712], 'wheat': [2713, 3175], 'embryos.Eur.': [2714], 'Biochem.': [2716], '1979;': [2717], '99:': [2718], '217-224Crossref': [2719], '28Walthall': [2725], 'E.D.': [2726], 'Brady': [2727], 'suspensor': [2733], 'gibberellic': [2735], 'Phaseolus': [2738], 'vulgaris': [2739], 'synthesis.Cell': [2742], 'Differ.': [2743], '1986;': [2744], '18:': [2745], '37-44Crossref': [2746], '29Beltrán-Peña': [2750], 'Ortíz-López': [2752], 'Sánchez': [2754], 'Jiménez': [2756], 'Synthesis': [2758], 'ribosomal': [2760], '1995;': [2771], '28:': [2772], '327-336Crossref': [2773], '(49)': [2776], 'there': [2780], 'ample': [2782], 'circumstantial': [2783], 'exogenously': [2786], 'applied': [2787], 'can': [2789, 2808, 4116], 'easily': [2790], 'penetrate': [2791], 'cells;': [2794], 'indeed,': [2795], 'altered': [2796], 'phenotypes': [2798], 'caused': [2799], 'biosynthesis': [2805, 2827, 2964], 'and/or': [2806], 'be': [2809, 3961, 4117], 'alleviated': [2810], 'upon': [2811], 'supplementation': [2813], '(30Ravanel': [2814], 'Gakière': [2816], 'Douce': [2820, 2912], 'features': [2824], 'methionine': [2826, 2893, 2924, 2963], 'plants.Proc.': [2831], 'Natl.': [2832], 'Acad.': [2833, 2936], 'U.S.A.': [2835], '1998;': [2836], '95:': [2837], '7805-7812Crossref': [2838], '(384)': [2841], '31Maimann': [2844], 'Wagner': [2846], 'Kreft': [2848], 'Zeh': [2850], 'Willmitzer': [2852], 'Höfgen': [2854], 'Hesse': [2856], 'Transgenic': [2858], 'potato': [2859], 'plants': [2860, 2929], 'indispensable': [2863], 'cystathionine': [2866, 2886, 2932], 'beta-lyase': [2867], 'development.Plant': [2872], '2000;': [2874, 2899, 2939], '747-758Crossref': [2876], '32Kim': [2880], 'Leustek': [2882], 'Repression': [2884], 'gamma-synthase': [2887, 2933], 'produces': [2891], 'partial': [2892], 'auxotrophy': [2894], 'abnormalities.Plant': [2897], '151:': [2900], '9-18Crossref': [2901], '33Gakière': [2906], 'Ravanel': [2908], 'Droux': [2910], 'account': [2918], 'maintenance': [2920], 'soluble': [2923], 'pool': [2925], 'transgenic': [2927], 'expressing': [2930], 'antisense': [2931], 'cDNA.C.': [2934], 'III.': [2938], '323:': [2940], '841-851Crossref': [2941], '34Gallardo': [2947], 'Puype': [2953], 'Demol': [2955], 'Importance': [2961], 'growth.Physiol.': [2971], '2002;': [2973], '116:': [2974], '238-247Crossref': [2975], '(135)': [2978], 'Following': [2981], 'incubation,': [2982], 'total': [2983, 3762, 4067], 'extracts': [2985, 3050, 3198], 'prepared': [2987], 'previously': [2989], '(35Rajjou': [2991, 3060, 3209, 3307], 'Oge': [2997, 3066, 3215, 3313], 'Arc': [2999, 3068, 3217, 3315], 'Ali-Rachedi': [3005, 3074, 3223, 3321], 'Collet': [3007, 3076, 3225, 3323], 'Proteomics': [3019, 3088, 3237, 3335], 'posttranslational': [3021, 3090, 3239, 3337], 'germination.Methods': [3027, 3096, 3245, 3343], '773:': [3031, 3100, 3249, 3347], '215-236Crossref': [3032, 3101, 3250, 3348], '(15)': [3035, 3104, 3253, 3351], 'prevent': [3041], 'unspecific': [3042], 'labeling': [3044], 'free': [3046], '[35S]-Met,': [3047], 'precipitated': [3052], 'trichloroacetic': [3054, 3115, 3135], 'acid/acetone': [3055], 'before': [3056, 3896], 'electrophoresis': [3058, 3205, 3261], 'separation': [3059], 'amount': [3108, 3526, 3573], 'was': [3112, 3421, 3532, 3566, 3580, 3735, 3788, 3842, 3901, 4032, 4129], 'measured': [3113], 'precipitation': [3117], 'aliquots': [3119], 'reaction': [3121], 'mixtures': [3122], 'spotted': [3123], 'Whatmann': [3125], 'GF/C': [3126], 'filters;': [3127], 'eight': [3129], 'washing': [3130, 3144], 'steps': [3131, 3145], '5%': [3134], '0.04': [3138], 'm': [3139], 'sodium': [3140], 'pyrophosphate': [3141], 'absolute': [3147], 'methanol,': [3148], 'filters': [3149], 'dried': [3151, 3359], 'counted': [3153], 'radioactivity': [3155], 'liquid': [3158, 3275], 'scintillation': [3159], 'counter': [3160], '(36Dietrich': [3161], 'Teissere': [3163], 'Poly(dAT)': [3169], 'dependent': [3170], 'trinucleotide': [3171], 'catalysed': [3173], 'germ': [3176], 'polymerase': [3178], 'II.': [3179], 'Effects': [3180], 'nucleotide': [3182], 'substrates': [3183], 'cordycepin': [3185], 'triphosphate.Nucleic': [3186], 'Acids': [3187, 3725], '1985;': [3189], '6155-6170Crossref': [3191], 'submitted': [3201, 3462], 'elsewhere': [3208], 'S-adenosylmethionine': [3262], 'Index': [3265], 'enolase': [3266], 'endoplasmic': [3267], 'reticulum': [3268], 'ferritin': [3269], 'γ-aminobutyrate': [3270], 'glyoxylate': [3271], 'reductase': [3272, 3280], 'spectrometry': [3278], 'monodehydroascorbate': [3279], 'PYK10-binding': [3281], 'isomerase': [3285], 'reactive': [3286], 'tricarboxylic': [3292], 'tetrahydrofolate': [3294], 'tripeptidyl': [3295], 'Proteins': [3297, 3505], 'gels': [3301, 3357, 3407, 3487], 'stained': [3303, 3355], 'silver': [3305], 'nitrate': [3306], 'Then,': [3354, 3473, 3569], '2': [3361], 'days': [3362, 3452], 'room': [3364], 'temperature': [3365], 'sandwich': [3368], 'composed': [3369], 'of,': [3370, 3948], 'bottom': [3372], 'top,': [3374], 'one': [3375, 3385, 3396], 'sheet': [3376, 3386, 3397, 3438, 3445], 'cellophane': [3378, 3399, 3440], 'Gel': [3380, 3401], 'Dryer': [3381, 3402], '(Bio-Rad),': [3382], 'gel,': [3384], 'Saran': [3388, 3443], 'Wrap': [3389, 3444], '(VWR': [3390], 'International': [3391], 'SAS,': [3392], 'Fontenay-sous-Bois,': [3393], 'France),': [3394], '(Bio-Rad).': [3403], 'After': [3404], 'drying,': [3405], 'silver-stained': [3406, 3485], 'scanned': [3409], 'Sharp': [3412], 'JX-330': [3413], 'scanner': [3414], '(Sharp': [3415], 'Electronics,': [3416], 'Roissy,': [3417], 'France).': [3418, 3435], 'Image': [3419], 'ImageMaster': [3425, 3545], '2D': [3426, 3546], 'Elite': [3427, 3547], 'version': [3428, 3548], '4.01': [3429, 3549], 'software': [3430, 3550, 3613], '(Amersham': [3431, 3551], 'Biosciences,': [3432], 'Les': [3433], 'Ulis,': [3434], 'upper': [3437], 'peeled': [3447], 'exposed': [3449], '15': [3451], 'phosphor': [3455], 'screens': [3456, 3460], '(GE': [3457], 'Healthcare).': [3458], 'phosphorimager': [3464], '(Molecular': [3466], 'Dynamics': [3467], 'Storm': [3468], '840': [3469], 'phosphorimager,': [3470], 'Amersham': [3471], 'Biosciences).': [3472, 3552], 'autoradiography': [3478, 3543], 'matched': [3480], 'according': [3488], 'position': [3492], '(molecular': [3493], 'weight': [3494], 'pI)': [3496], 'spot': [3500], 'shape': [3501], '(supplemental': [3502, 3955], 'Fig.': [3503], 'S1).': [3504], 'interest': [3507], 'identified': [3509, 4203], 'reference': [3514], 'maps': [3516, 4089], 'online': [3523], 'http://www.seed-proteome.com/.': [3524], 'calculated': [3533], 'densitometric': [3536], 'spots': [3540, 3743, 3758, 4195], 'For': [3553, 4024], 'neosynthesis': [3555, 3559, 3572, 4063], 'clustering,': [3556], 'intensity': [3560, 4064, 4082], 'different': [3563, 3589], 'isoforms': [3565], 'first': [3567, 3581, 3843], 'summed.': [3568], 'resulting': [3576], '158': [3577], 'nonredundant': [3578], 'normalized': [3582, 3595, 3905, 4029, 4078, 4114], 'maximum': [3585, 4036, 4081], 'value': [3586, 4031], 'across': [3587], 'lapses.': [3591], 'protein-neosynthesis': [3594], 'intensities': [3596, 3906, 4048], 'clustered': [3598], 'via': [3599, 4189, 4204], 'K-means': [3601], 'method': [3602], '(eight': [3603], 'clusters,': [3604], '10': [3605], 'iterations)': [3606], 'Pearson': [3609], 'correlations': [3610], 'MeV': [3612], '(37Saeed': [3614], 'A.I.': [3615], 'Sharov': [3616], 'V.': [3617, 3653], 'White': [3618], 'Li': [3620], 'Liang': [3622], 'Bhagabati': [3624], 'Braisted': [3626], 'Klapa': [3628], 'Currier': [3630], 'Thiagarajan': [3632], 'Sturn': [3634], 'Snuffin': [3636], 'Rezantsev': [3638], 'Popov': [3640], 'Ryltsov': [3642], 'Kostukovich': [3644], 'Borisovsky': [3646], 'Liu': [3648], 'Z.': [3649], 'Vinsavich': [3650], 'Trush': [3652], 'Quackenbush': [3654], 'TM4:': [3656], 'free,': [3658], 'open-source': [3659], 'microarray': [3662], 'management': [3664], 'analysis.Biotechniques.': [3666], '2003;': [3667], '34:': [3668], '374-378Crossref': [3669], '(3926)': [3672], 'Munich': [3676], 'Information': [3677], 'Center': [3678], 'Sequence': [3681], 'Catalogue': [3683], 'Database': [3684], '(38Ruepp': [3689], 'Zollner': [3691], 'Maier': [3693], 'Albermann': [3695], 'Hani': [3697], 'Mokrejs': [3699], 'Tetko': [3701], 'Guldener': [3703], 'U.': [3704], 'Mannhaupt': [3705], 'Munsterkotter': [3707], 'Mewes': [3709], 'H.W.': [3710], 'FunCat,': [3712], 'annotation': [3715], 'scheme': [3716], 'systematic': [3718], 'classification': [3719], 'whole': [3723], 'genomes.Nucleic': [3724], '32:': [3728], '5539-5545Crossref': [3729], '(877)': [3732], 'annotate': [3738], '202': [3740], '2DE': [3741, 3756, 4190], '273': [3755], 'set.': [3771], 'An': [3772], 'Affymetrix': [3773, 3867, 3917], 'ATH1': [3774], 'focused': [3777], 'physiology': [3781], 'harvest': [3783], 'stages': [3787], 'retrieved': [3789, 4076], 'Microarray': [3833], 'Suite': [3835], '5.0': [3836], '(Affymetrix,': [3837], 'Santa': [3838], 'Clara,': [3839], 'CA)': [3840], 'normalization': [3841, 3900], 'performed': [3844, 3902], 'raw': [3846], 'CEL': [3847], 'files': [3848], 'determine': [3850], 'present/absent/marginal': [3851], 'calls': [3852], 'each': [3854, 4025], 'probe': [3855, 3872, 3922, 4047], '(39Gautier': [3857, 3907], 'Cope': [3859, 3909], 'Bolstad': [3861, 3911], 'B.M.': [3862, 3912], 'Irizarry': [3863, 3913], 'R.A.': [3864, 3914], 'Affy—analysis': [3865, 3915], 'GeneChip': [3868, 3918], 'level.Bioinformatics.': [3873, 3923], '20:': [3875, 3925], '307-315Crossref': [3876, 3926], '(3247)': [3879, 3929], 'Probe': [3882], 'sets': [3883], 'considered': [3885], 'if': [3887], 'they': [3888], 'least': [3893], 'replicates': [3895], 'GC-Robust': [3897], 'Multiarray': [3898], 'Average': [3899], 'obtain': [3904], 'From': [3932], '20,': [3934, 3937], '24,': [3935, 3971], '18,': [3936], '15,': [3938], '10,': [3939], '27,': [3940], '13': [3942], 'unambiguous': [3943], 'Indexes': [3946], '(AGIs)': [3947], 'Cluster': [3950, 3953, 4056], '1': [3951], 'Table': [3956, 4121], 'S8),': [3957], 'could': [3960], 'found': [3962, 4118], '19,': [3965], '22,': [3966], '16,': [3967], '17,': [3968], '12,': [3969], '6,': [3970], '12': [3973], 'AGIs': [3974], 'gene,': [4026], 'corresponding': [4028, 4072], 'transcript': [4030, 4040], 'its': [4035], 'reach': [4038], 'abundance': [4041, 4069], '1.': [4045], 'GAPC1': [4050], '(At3g04120)': [4051], 'ACT7': [4053], '(At5g09810)': [4054], 'averaged.': [4059], 'Similarly,': [4060], 'AGI': [4073], 'along': [4083], 'course.': [4087], 'Heat': [4088], 'built': [4091], 'R': [4093, 4105], '(40R': [4094], 'Development': [4095], 'Core': [4096], 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