Publication Information

{'id': 'https://openalex.org/W2133917457', 'doi': 'https://doi.org/10.1093/nar/gkm382', 'title': 'Selecton 2007: advanced models for detecting positive and purifying selection using a Bayesian inference approach', 'display_name': 'Selecton 2007: advanced models for detecting positive and purifying selection using a Bayesian inference approach', 'publication_year': 2007, 'publication_date': '2007-05-08', 'ids': {'openalex': 'https://openalex.org/W2133917457', 'doi': 'https://doi.org/10.1093/nar/gkm382', 'mag': '2133917457', 'pmid': 'https://pubmed.ncbi.nlm.nih.gov/17586822', 'pmcid': 'https://www.ncbi.nlm.nih.gov/pmc/articles/1933148'}, 'language': 'en', 'primary_location': {'is_oa': True, 'landing_page_url': 'https://doi.org/10.1093/nar/gkm382', 'pdf_url': 'https://academic.oup.com/nar/article-pdf/35/suppl_2/W506/9586938/gkm382.pdf', 'source': {'id': 'https://openalex.org/S134668137', 'display_name': 'Nucleic Acids Research', 'issn_l': '0305-1048', 'issn': ['0305-1048', '1362-4954', '1362-4962'], 'is_oa': True, 'is_in_doaj': True, 'is_indexed_in_scopus': True, 'is_core': True, 'host_organization': 'https://openalex.org/P4310311648', 'host_organization_name': 'Oxford University Press', 'host_organization_lineage': ['https://openalex.org/P4310311647', 'https://openalex.org/P4310311648'], 'host_organization_lineage_names': ['University of Oxford', 'Oxford University Press'], 'type': 'journal'}, 'license': 'cc-by-nc', 'license_id': 'https://openalex.org/licenses/cc-by-nc', 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, 'type': 'article', 'type_crossref': 'journal-article', 'indexed_in': ['crossref', 'pubmed'], 'open_access': {'is_oa': True, 'oa_status': 'gold', 'oa_url': 'https://academic.oup.com/nar/article-pdf/35/suppl_2/W506/9586938/gkm382.pdf', 'any_repository_has_fulltext': True}, 'authorships': [{'author_position': 'first', 'author': {'id': 'https://openalex.org/A5111460211', 'display_name': 'A. Stern', 'orcid': None}, 'institutions': [{'id': 'https://openalex.org/I24603500', 'display_name': 'University of Massachusetts Amherst', 'ror': 'https://ror.org/0072zz521', 'country_code': 'US', 'type': 'education', 'lineage': ['https://openalex.org/I24603500']}, {'id': 'https://openalex.org/I16391192', 'display_name': 'Tel Aviv University', 'ror': 'https://ror.org/04mhzgx49', 'country_code': 'IL', 'type': 'education', 'lineage': ['https://openalex.org/I16391192']}], 'countries': ['IL', 'US'], 'is_corresponding': False, 'raw_author_name': 'A. Stern', 'raw_affiliation_strings': ['Department of Cell Research and Immunology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Ramat Aviv 69978, Israel and 2Department of Microbiology, University of Massachusetts, Amherst, MA 01003, USA'], 'affiliations': [{'raw_affiliation_string': 'Department of Cell Research and Immunology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Ramat Aviv 69978, Israel and 2Department of Microbiology, University of Massachusetts, Amherst, MA 01003, USA', 'institution_ids': ['https://openalex.org/I24603500', 'https://openalex.org/I16391192']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5041379517', 'display_name': 'Adi Doron‐Faigenboim', 'orcid': None}, 'institutions': [{'id': 'https://openalex.org/I16391192', 'display_name': 'Tel Aviv University', 'ror': 'https://ror.org/04mhzgx49', 'country_code': 'IL', 'type': 'education', 'lineage': ['https://openalex.org/I16391192']}, {'id': 'https://openalex.org/I24603500', 'display_name': 'University of Massachusetts Amherst', 'ror': 'https://ror.org/0072zz521', 'country_code': 'US', 'type': 'education', 'lineage': ['https://openalex.org/I24603500']}], 'countries': ['IL', 'US'], 'is_corresponding': False, 'raw_author_name': 'A. Doron-Faigenboim', 'raw_affiliation_strings': ['Department of Cell Research and Immunology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Ramat Aviv 69978, Israel and 2Department of Microbiology, University of Massachusetts, Amherst, MA 01003, USA'], 'affiliations': [{'raw_affiliation_string': 'Department of Cell Research and Immunology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Ramat Aviv 69978, Israel and 2Department of Microbiology, University of Massachusetts, Amherst, MA 01003, USA', 'institution_ids': ['https://openalex.org/I16391192', 'https://openalex.org/I24603500']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5057587867', 'display_name': 'Elona Erez', 'orcid': None}, 'institutions': [{'id': 'https://openalex.org/I16391192', 'display_name': 'Tel Aviv University', 'ror': 'https://ror.org/04mhzgx49', 'country_code': 'IL', 'type': 'education', 'lineage': ['https://openalex.org/I16391192']}, {'id': 'https://openalex.org/I24603500', 'display_name': 'University of Massachusetts Amherst', 'ror': 'https://ror.org/0072zz521', 'country_code': 'US', 'type': 'education', 'lineage': ['https://openalex.org/I24603500']}], 'countries': ['IL', 'US'], 'is_corresponding': False, 'raw_author_name': 'E. Erez', 'raw_affiliation_strings': ['Department of Cell Research and Immunology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Ramat Aviv 69978, Israel and 2Department of Microbiology, University of Massachusetts, Amherst, MA 01003, USA'], 'affiliations': [{'raw_affiliation_string': 'Department of Cell Research and Immunology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Ramat Aviv 69978, Israel and 2Department of Microbiology, University of Massachusetts, Amherst, MA 01003, USA', 'institution_ids': ['https://openalex.org/I16391192', 'https://openalex.org/I24603500']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5049555309', 'display_name': 'Eric Martz', 'orcid': 'https://orcid.org/0000-0003-4679-6967'}, 'institutions': [{'id': 'https://openalex.org/I16391192', 'display_name': 'Tel Aviv University', 'ror': 'https://ror.org/04mhzgx49', 'country_code': 'IL', 'type': 'education', 'lineage': ['https://openalex.org/I16391192']}, {'id': 'https://openalex.org/I24603500', 'display_name': 'University of Massachusetts Amherst', 'ror': 'https://ror.org/0072zz521', 'country_code': 'US', 'type': 'education', 'lineage': ['https://openalex.org/I24603500']}], 'countries': ['IL', 'US'], 'is_corresponding': False, 'raw_author_name': 'E. Martz', 'raw_affiliation_strings': ['Department of Cell Research and Immunology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Ramat Aviv 69978, Israel and 2Department of Microbiology, University of Massachusetts, Amherst, MA 01003, USA'], 'affiliations': [{'raw_affiliation_string': 'Department of Cell Research and Immunology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Ramat Aviv 69978, Israel and 2Department of Microbiology, University of Massachusetts, Amherst, MA 01003, USA', 'institution_ids': ['https://openalex.org/I16391192', 'https://openalex.org/I24603500']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5089389573', 'display_name': 'Eran Bacharach', 'orcid': 'https://orcid.org/0000-0001-8341-2833'}, 'institutions': [{'id': 'https://openalex.org/I16391192', 'display_name': 'Tel Aviv University', 'ror': 'https://ror.org/04mhzgx49', 'country_code': 'IL', 'type': 'education', 'lineage': ['https://openalex.org/I16391192']}, {'id': 'https://openalex.org/I24603500', 'display_name': 'University of Massachusetts Amherst', 'ror': 'https://ror.org/0072zz521', 'country_code': 'US', 'type': 'education', 'lineage': ['https://openalex.org/I24603500']}], 'countries': ['IL', 'US'], 'is_corresponding': False, 'raw_author_name': 'E. Bacharach', 'raw_affiliation_strings': ['Department of Cell Research and Immunology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Ramat Aviv 69978, Israel and 2Department of Microbiology, University of Massachusetts, Amherst, MA 01003, USA'], 'affiliations': [{'raw_affiliation_string': 'Department of Cell Research and Immunology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Ramat Aviv 69978, Israel and 2Department of Microbiology, University of Massachusetts, Amherst, MA 01003, USA', 'institution_ids': ['https://openalex.org/I16391192', 'https://openalex.org/I24603500']}]}, {'author_position': 'last', 'author': {'id': 'https://openalex.org/A5070736617', 'display_name': 'Tal Pupko', 'orcid': 'https://orcid.org/0000-0001-9463-2575'}, 'institutions': [{'id': 'https://openalex.org/I16391192', 'display_name': 'Tel Aviv University', 'ror': 'https://ror.org/04mhzgx49', 'country_code': 'IL', 'type': 'education', 'lineage': ['https://openalex.org/I16391192']}, {'id': 'https://openalex.org/I24603500', 'display_name': 'University of Massachusetts Amherst', 'ror': 'https://ror.org/0072zz521', 'country_code': 'US', 'type': 'education', 'lineage': ['https://openalex.org/I24603500']}], 'countries': ['IL', 'US'], 'is_corresponding': False, 'raw_author_name': 'T. Pupko', 'raw_affiliation_strings': ['Department of Cell Research and Immunology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Ramat Aviv 69978, Israel and 2Department of Microbiology, University of Massachusetts, Amherst, MA 01003, USA'], 'affiliations': [{'raw_affiliation_string': 'Department of Cell Research and Immunology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Ramat Aviv 69978, Israel and 2Department of Microbiology, University of Massachusetts, Amherst, MA 01003, USA', 'institution_ids': ['https://openalex.org/I16391192', 'https://openalex.org/I24603500']}]}], 'institution_assertions': [], 'countries_distinct_count': 2, 'institutions_distinct_count': 2, 'corresponding_author_ids': [], 'corresponding_institution_ids': [], 'apc_list': {'value': 3630, 'currency': 'USD', 'value_usd': 3630, 'provenance': 'doaj'}, 'apc_paid': {'value': 3630, 'currency': 'USD', 'value_usd': 3630, 'provenance': 'doaj'}, 'fwci': 6.208, 'has_fulltext': True, 'fulltext_origin': 'ngrams', 'cited_by_count': 313, 'citation_normalized_percentile': {'value': 0.999983, 'is_in_top_1_percent': True, 'is_in_top_10_percent': True}, 'cited_by_percentile_year': {'min': 99, 'max': 100}, 'biblio': {'volume': '35', 'issue': 'Web Server', 'first_page': 'W506', 'last_page': 'W511'}, 'is_retracted': False, 'is_paratext': False, 'primary_topic': {'id': 'https://openalex.org/T10521', 'display_name': 'RNA and protein synthesis mechanisms', 'score': 0.9991, 'subfield': {'id': 'https://openalex.org/subfields/1312', 'display_name': 'Molecular Biology'}, 'field': {'id': 'https://openalex.org/fields/13', 'display_name': 'Biochemistry, Genetics and Molecular Biology'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}, 'topics': [{'id': 'https://openalex.org/T10521', 'display_name': 'RNA and protein synthesis mechanisms', 'score': 0.9991, 'subfield': {'id': 'https://openalex.org/subfields/1312', 'display_name': 'Molecular Biology'}, 'field': {'id': 'https://openalex.org/fields/13', 'display_name': 'Biochemistry, Genetics and Molecular Biology'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}, {'id': 'https://openalex.org/T10015', 'display_name': 'Genomics and Phylogenetic Studies', 'score': 0.9974, 'subfield': {'id': 'https://openalex.org/subfields/1312', 'display_name': 'Molecular Biology'}, 'field': {'id': 'https://openalex.org/fields/13', 'display_name': 'Biochemistry, Genetics and Molecular Biology'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}, {'id': 'https://openalex.org/T10044', 'display_name': 'Protein Structure and Dynamics', 'score': 0.996, 'subfield': {'id': 'https://openalex.org/subfields/1312', 'display_name': 'Molecular Biology'}, 'field': {'id': 'https://openalex.org/fields/13', 'display_name': 'Biochemistry, Genetics and Molecular Biology'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}], 'keywords': [{'id': 'https://openalex.org/keywords/negative-selection', 'display_name': 'Negative selection', 'score': 0.7023275}, {'id': 'https://openalex.org/keywords/statistical-inference', 'display_name': 'Statistical Inference', 'score': 0.48135215}], 'concepts': [{'id': 'https://openalex.org/C86803240', 'wikidata': 'https://www.wikidata.org/wiki/Q420', 'display_name': 'Biology', 'level': 0, 'score': 0.75584245}, {'id': 'https://openalex.org/C11392498', 'wikidata': 'https://www.wikidata.org/wiki/Q11288', 'display_name': 'Web server', 'level': 3, 'score': 0.7030822}, {'id': 'https://openalex.org/C7386963', 'wikidata': 'https://www.wikidata.org/wiki/Q3954859', 'display_name': 'Negative selection', 'level': 4, 'score': 0.7023275}, {'id': 'https://openalex.org/C81917197', 'wikidata': 'https://www.wikidata.org/wiki/Q628760', 'display_name': 'Selection (genetic algorithm)', 'level': 2, 'score': 0.6611817}, {'id': 'https://openalex.org/C2776214188', 'wikidata': 'https://www.wikidata.org/wiki/Q408386', 'display_name': 'Inference', 'level': 2, 'score': 0.6183288}, {'id': 'https://openalex.org/C193252679', 'wikidata': 'https://www.wikidata.org/wiki/Q242125', 'display_name': 'Phylogenetic tree', 'level': 3, 'score': 0.5332489}, {'id': 'https://openalex.org/C70721500', 'wikidata': 'https://www.wikidata.org/wiki/Q177005', 'display_name': 'Computational biology', 'level': 1, 'score': 0.51652926}, {'id': 'https://openalex.org/C134261354', 'wikidata': 'https://www.wikidata.org/wiki/Q938438', 'display_name': 'Statistical inference', 'level': 2, 'score': 0.48135215}, {'id': 'https://openalex.org/C160234255', 'wikidata': 'https://www.wikidata.org/wiki/Q812535', 'display_name': 'Bayesian inference', 'level': 3, 'score': 0.46529377}, {'id': 'https://openalex.org/C207201462', 'wikidata': 'https://www.wikidata.org/wiki/Q182505', 'display_name': "Bayes' theorem", 'level': 3, 'score': 0.42028123}, {'id': 'https://openalex.org/C107673813', 'wikidata': 'https://www.wikidata.org/wiki/Q812534', 'display_name': 'Bayesian probability', 'level': 2, 'score': 0.41476575}, {'id': 'https://openalex.org/C41008148', 'wikidata': 'https://www.wikidata.org/wiki/Q21198', 'display_name': 'Computer science', 'level': 0, 'score': 0.38152626}, {'id': 'https://openalex.org/C119857082', 'wikidata': 'https://www.wikidata.org/wiki/Q2539', 'display_name': 'Machine learning', 'level': 1, 'score': 0.3452525}, {'id': 'https://openalex.org/C54355233', 'wikidata': 'https://www.wikidata.org/wiki/Q7162', 'display_name': 'Genetics', 'level': 1, 'score': 0.31153098}, {'id': 'https://openalex.org/C110875604', 'wikidata': 'https://www.wikidata.org/wiki/Q75', 'display_name': 'The Internet', 'level': 2, 'score': 0.29223937}, {'id': 'https://openalex.org/C154945302', 'wikidata': 'https://www.wikidata.org/wiki/Q11660', 'display_name': 'Artificial intelligence', 'level': 1, 'score': 0.28448167}, {'id': 'https://openalex.org/C141231307', 'wikidata': 'https://www.wikidata.org/wiki/Q7020', 'display_name': 'Genome', 'level': 3, 'score': 0.17141616}, {'id': 'https://openalex.org/C104317684', 'wikidata': 'https://www.wikidata.org/wiki/Q7187', 'display_name': 'Gene', 'level': 2, 'score': 0.16511351}, {'id': 'https://openalex.org/C33923547', 'wikidata': 'https://www.wikidata.org/wiki/Q395', 'display_name': 'Mathematics', 'level': 0, 'score': 0.14197922}, {'id': 'https://openalex.org/C105795698', 'wikidata': 'https://www.wikidata.org/wiki/Q12483', 'display_name': 'Statistics', 'level': 1, 'score': 0.12485838}, {'id': 'https://openalex.org/C136764020', 'wikidata': 'https://www.wikidata.org/wiki/Q466', 'display_name': 'World Wide Web', 'level': 1, 'score': 0.0}], 'mesh': [{'descriptor_ui': 'D000465', 'descriptor_name': 'Algorithms', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': True}, {'descriptor_ui': 'D000596', 'descriptor_name': 'Amino Acids', 'qualifier_ui': 'Q000235', 'qualifier_name': 'genetics', 'is_major_topic': True}, {'descriptor_ui': 'D000596', 'descriptor_name': 'Amino Acids', 'qualifier_ui': 'Q000737', 'qualifier_name': 'chemistry', 'is_major_topic': True}, {'descriptor_ui': 'D019295', 'descriptor_name': 'Computational Biology', 'qualifier_ui': 'Q000379', 'qualifier_name': 'methods', 'is_major_topic': True}, {'descriptor_ui': 'D008958', 'descriptor_name': 'Models, Molecular', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': True}, {'descriptor_ui': 'D011506', 'descriptor_name': 'Proteins', 'qualifier_ui': 'Q000235', 'qualifier_name': 'genetics', 'is_major_topic': True}, {'descriptor_ui': 'D011506', 'descriptor_name': 'Proteins', 'qualifier_ui': 'Q000737', 'qualifier_name': 'chemistry', 'is_major_topic': True}, {'descriptor_ui': 'D020539', 'descriptor_name': 'Sequence Analysis, Protein', 'qualifier_ui': 'Q000379', 'qualifier_name': 'methods', 'is_major_topic': True}, {'descriptor_ui': 'D000595', 'descriptor_name': 'Amino Acid Sequence', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D019943', 'descriptor_name': 'Amino Acid Substitution', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D019943', 'descriptor_name': 'Amino Acid Substitution', 'qualifier_ui': 'Q000235', 'qualifier_name': 'genetics', 'is_major_topic': False}, {'descriptor_ui': 'D000596', 'descriptor_name': 'Amino Acids', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D000818', 'descriptor_name': 'Animals', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D001499', 'descriptor_name': 'Bayes Theorem', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D019295', 'descriptor_name': 'Computational Biology', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D003198', 'descriptor_name': 'Computer Simulation', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D006801', 'descriptor_name': 'Humans', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D020407', 'descriptor_name': 'Internet', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D008969', 'descriptor_name': 'Molecular Sequence Data', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D010802', 'descriptor_name': 'Phylogeny', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D011506', 'descriptor_name': 'Proteins', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D020539', 'descriptor_name': 'Sequence Analysis, Protein', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D012984', 'descriptor_name': 'Software', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}], 'locations_count': 5, 'locations': [{'is_oa': True, 'landing_page_url': 'https://doi.org/10.1093/nar/gkm382', 'pdf_url': 'https://academic.oup.com/nar/article-pdf/35/suppl_2/W506/9586938/gkm382.pdf', 'source': {'id': 'https://openalex.org/S134668137', 'display_name': 'Nucleic Acids Research', 'issn_l': '0305-1048', 'issn': ['0305-1048', '1362-4954', '1362-4962'], 'is_oa': True, 'is_in_doaj': True, 'is_indexed_in_scopus': True, 'is_core': True, 'host_organization': 'https://openalex.org/P4310311648', 'host_organization_name': 'Oxford University Press', 'host_organization_lineage': ['https://openalex.org/P4310311647', 'https://openalex.org/P4310311648'], 'host_organization_lineage_names': ['University of Oxford', 'Oxford University Press'], 'type': 'journal'}, 'license': 'cc-by-nc', 'license_id': 'https://openalex.org/licenses/cc-by-nc', 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, {'is_oa': True, 'landing_page_url': 'https://europepmc.org/articles/pmc1933148', 'pdf_url': 'https://europepmc.org/articles/pmc1933148?pdf=render', 'source': {'id': 'https://openalex.org/S4306400806', 'display_name': 'Europe PMC (PubMed Central)', 'issn_l': None, 'issn': None, 'is_oa': True, 'is_in_doaj': False, 'is_indexed_in_scopus': False, 'is_core': False, 'host_organization': 'https://openalex.org/I1303153112', 'host_organization_name': 'European Bioinformatics Institute', 'host_organization_lineage': ['https://openalex.org/I1303153112'], 'host_organization_lineage_names': ['European Bioinformatics Institute'], 'type': 'repository'}, 'license': 'cc-by-nc', 'license_id': 'https://openalex.org/licenses/cc-by-nc', 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, {'is_oa': True, 'landing_page_url': 'https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1933148', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S2764455111', 'display_name': 'PubMed Central', 'issn_l': None, 'issn': None, 'is_oa': True, 'is_in_doaj': False, 'is_indexed_in_scopus': False, 'is_core': False, 'host_organization': 'https://openalex.org/I1299303238', 'host_organization_name': 'National Institutes of Health', 'host_organization_lineage': ['https://openalex.org/I1299303238'], 'host_organization_lineage_names': ['National Institutes of Health'], 'type': 'repository'}, 'license': None, 'license_id': None, 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, {'is_oa': True, 'landing_page_url': 'http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.133.3154', 'pdf_url': 'http://www.tau.ac.il/~talp/publications/selecton2007.pdf', 'source': {'id': 'https://openalex.org/S4306400349', 'display_name': 'CiteSeer X (The Pennsylvania State University)', 'issn_l': None, 'issn': None, 'is_oa': True, 'is_in_doaj': False, 'is_indexed_in_scopus': False, 'is_core': False, 'host_organization': 'https://openalex.org/I130769515', 'host_organization_name': 'Pennsylvania State University', 'host_organization_lineage': ['https://openalex.org/I130769515'], 'host_organization_lineage_names': ['Pennsylvania State University'], 'type': 'repository'}, 'license': None, 'license_id': None, 'version': 'submittedVersion', 'is_accepted': False, 'is_published': False}, {'is_oa': False, 'landing_page_url': 'https://pubmed.ncbi.nlm.nih.gov/17586822', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S4306525036', 'display_name': 'PubMed', 'issn_l': None, 'issn': None, 'is_oa': False, 'is_in_doaj': False, 'is_indexed_in_scopus': False, 'is_core': False, 'host_organization': 'https://openalex.org/I1299303238', 'host_organization_name': 'National Institutes of Health', 'host_organization_lineage': ['https://openalex.org/I1299303238'], 'host_organization_lineage_names': ['National Institutes of Health'], 'type': 'repository'}, 'license': None, 'license_id': None, 'version': None, 'is_accepted': False, 'is_published': False}], 'best_oa_location': {'is_oa': True, 'landing_page_url': 'https://doi.org/10.1093/nar/gkm382', 'pdf_url': 'https://academic.oup.com/nar/article-pdf/35/suppl_2/W506/9586938/gkm382.pdf', 'source': {'id': 'https://openalex.org/S134668137', 'display_name': 'Nucleic Acids Research', 'issn_l': '0305-1048', 'issn': ['0305-1048', '1362-4954', '1362-4962'], 'is_oa': True, 'is_in_doaj': True, 'is_indexed_in_scopus': True, 'is_core': True, 'host_organization': 'https://openalex.org/P4310311648', 'host_organization_name': 'Oxford University Press', 'host_organization_lineage': ['https://openalex.org/P4310311647', 'https://openalex.org/P4310311648'], 'host_organization_lineage_names': ['University of Oxford', 'Oxford University Press'], 'type': 'journal'}, 'license': 'cc-by-nc', 'license_id': 'https://openalex.org/licenses/cc-by-nc', 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, 'sustainable_development_goals': [], 'grants': [], 'datasets': [], 'versions': [], 'referenced_works_count': 46, 'referenced_works': ['https://openalex.org/W1570376951', 'https://openalex.org/W1689369637', 'https://openalex.org/W1832626394', 'https://openalex.org/W1907806866', 'https://openalex.org/W1920973730', 'https://openalex.org/W1972673599', 'https://openalex.org/W1974185791', 'https://openalex.org/W1974513345', 'https://openalex.org/W1983297759', 'https://openalex.org/W1993054962', 'https://openalex.org/W1993715180', 'https://openalex.org/W2003603552', 'https://openalex.org/W2017519756', 'https://openalex.org/W2031053199', 'https://openalex.org/W2050400345', 'https://openalex.org/W2057456873', 'https://openalex.org/W2069663555', 'https://openalex.org/W2076844958', 'https://openalex.org/W2082314789', 'https://openalex.org/W2092514667', 'https://openalex.org/W2095319152', 'https://openalex.org/W2095432597', 'https://openalex.org/W2097706568', 'https://openalex.org/W2112955970', 'https://openalex.org/W2113203969', 'https://openalex.org/W2116099439', 'https://openalex.org/W2116773729', 'https://openalex.org/W2119632499', 'https://openalex.org/W2122057759', 'https://openalex.org/W2124790653', 'https://openalex.org/W2133585817', 'https://openalex.org/W2136847298', 'https://openalex.org/W2138468602', 'https://openalex.org/W2141702919', 'https://openalex.org/W2142635246', 'https://openalex.org/W2146213764', 'https://openalex.org/W2147703962', 'https://openalex.org/W2147710356', 'https://openalex.org/W2147865566', 'https://openalex.org/W2148108643', 'https://openalex.org/W2160364329', 'https://openalex.org/W2160718838', 'https://openalex.org/W2163352757', 'https://openalex.org/W2170565120', 'https://openalex.org/W2775548375', 'https://openalex.org/W4379510236'], 'related_works': ['https://openalex.org/W4286981651', 'https://openalex.org/W4237728685', 'https://openalex.org/W3197430630', 'https://openalex.org/W3013612038', 'https://openalex.org/W235411870', 'https://openalex.org/W2133917457', 'https://openalex.org/W2111053936', 'https://openalex.org/W2012610719', 'https://openalex.org/W1987909119', 'https://openalex.org/W1563519935'], 'abstract_inverted_index': {'Biologically': [0], 'significant': [1], 'sites': [2], 'in': [3], 'a': [4, 39, 67, 97, 164], 'protein': [5, 98], 'may': [6], 'be': [7], 'identified': [8], 'by': [9], 'contrasting': [10], 'the': [11, 22, 45, 56, 94, 104, 115, 131, 134, 144, 152, 190, 196], 'rates': [12], 'of': [13, 24, 55, 78, 84, 93, 118, 130, 140, 143, 151, 157, 163, 192], 'synonymous': [14], '(Ks)': [15], 'and': [16, 29, 49, 161, 175, 189, 199], 'non-synonymous': [17], '(Ka)': [18], 'substitutions.': [19], 'This': [20, 58], 'enables': [21], 'inference': [23], 'site-specific': [25, 186], 'positive': [26, 72, 101], 'Darwinian': [27], 'selection': [28, 75, 187], 'purifying': [30, 74], 'selection.': [31, 79, 102], 'We': [32], 'present': [33], 'here': [34], 'Selecton': [35, 80, 168], 'version': [36, 169], '2.2': [37, 170], '(http://selecton.bioinfo.tau.ac.il),': [38], 'web': [40, 178], 'server': [41, 132, 179], 'which': [42, 88, 111, 180], 'automatically': [43], 'calculates': [44], 'ratio': [46, 59], 'between': [47], 'Ka': [48], 'Ks': [50], '(ω)': [51], 'at': [52], 'each': [53, 64], 'site': [54, 65], 'protein.': [57], 'is': [60, 109, 171], 'graphically': [61], 'displayed': [62], 'on': [63, 195], 'using': [66], 'color-coding': [68], 'scheme,': [69], 'indicating': [70], 'either': [71], 'selection,': [73], 'or': [76], 'lack': [77], 'implements': [81, 181], 'an': [82, 147, 172], 'assembly': [83], 'different': [85, 158], 'evolutionary': [86], 'models,': [87], 'allow': [89, 126], 'for': [90, 184], 'statistical': [91, 141], 'testing': [92], 'hypothesis': [95], 'that': [96], 'has': [99], 'undergone': [100], 'Specifically,': [103], 'recently': [105], 'developed': [106], 'mechanistic-empirical': [107], 'model': [108], 'introduced,': [110], 'takes': [112], 'into': [113], 'account': [114], 'physicochemical': [116], 'properties': [117], 'amino': [119], 'acids.': [120], 'Advanced': [121], 'options': [122], 'were': [123], 'introduced': [124], 'to': [125, 133], 'maximal': [127], 'fine': [128], 'tuning': [129], "user's": [135], 'specific': [136], 'needs,': [137], 'including': [138], 'calculation': [139], 'support': [142], 'ω': [145], 'values,': [146], 'advanced': [148], 'graphic': [149], 'display': [150], "protein's": [153, 197], '3-dimensional': [154], 'structure,': [155], 'use': [156], 'genetic': [159], 'codes': [160], 'inputting': [162], 'pre-built': [165], 'phylogenetic': [166], 'tree.': [167], 'effective,': [173], 'user-friendly': [174], 'freely': [176], 'available': [177], 'up-to-date': [182], 'methods': [183], 'computing': [185], 'forces,': [188], 'visualization': [191], 'these': [193], 'forces': [194], 'sequence': [198], 'structure.': [200]}, 'cited_by_api_url': 'https://api.openalex.org/works?filter=cites:W2133917457', 'counts_by_year': [{'year': 2024, 'cited_by_count': 7}, {'year': 2023, 'cited_by_count': 11}, {'year': 2022, 'cited_by_count': 24}, {'year': 2021, 'cited_by_count': 15}, {'year': 2020, 'cited_by_count': 15}, {'year': 2019, 'cited_by_count': 24}, {'year': 2018, 'cited_by_count': 15}, {'year': 2017, 'cited_by_count': 17}, {'year': 2016, 'cited_by_count': 20}, {'year': 2015, 'cited_by_count': 19}, {'year': 2014, 'cited_by_count': 25}, {'year': 2013, 'cited_by_count': 22}, {'year': 2012, 'cited_by_count': 29}], 'updated_date': '2025-01-17T06:22:02.355876', 'created_date': '2016-06-24'}