Publication Information

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'https://openalex.org/W2073305407', 'https://openalex.org/W2030680494', 'https://openalex.org/W1982193071', 'https://openalex.org/W1976583488'], 'abstract_inverted_index': {'Phosphate': [0, 236, 781, 2044, 2115, 4082], '(Pi)': [1, 237, 1984], 'deficiency': [2, 166, 238, 402, 1083, 1214, 1680, 2045, 3527, 4302], 'impairs': [3, 239], 'plant': [4, 240, 890, 1183, 2023, 2042, 2061, 2286], 'growth': [5, 241, 1699, 2455, 2555, 4042], 'and': [6, 37, 50, 63, 70, 77, 97, 115, 126, 154, 208, 214, 242, 273, 286, 299, 306, 313, 333, 351, 362, 390, 444, 450, 596, 610, 665, 670, 696, 705, 715, 763, 792, 833, 918, 961, 1001, 1035, 1094, 1218, 1242, 1250, 1260, 1272, 1313, 1334, 1354, 1368, 1383, 1408, 1444, 1482, 1527, 1619, 1656, 1700, 1817, 1827, 1841, 1859, 1922, 1934, 1937, 1946, 1951, 1965, 2004, 2031, 2056, 2081, 2104, 2106, 2112, 2117, 2126, 2147, 2175, 2361, 2371, 2377, 2409, 2434, 2518, 2537, 2557, 2600, 2612, 2618, 2645, 2676, 2685, 2700, 2742, 2756, 2761, 2776, 2799, 2830, 2860, 2879, 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'novel': [20, 192, 256, 428, 2191, 2426], 'aspects': [21, 193, 257, 429, 2427], 'acclimation': [23, 259], 'to': [24, 54, 194, 200, 233, 260, 290, 430, 436, 469, 483, 558, 608, 627, 638, 652, 661, 671, 701, 732, 738, 892, 968, 1043, 1122, 1132, 1212, 1247, 1341, 1744, 1751, 2010, 2309, 2321, 2337, 2553, 2623, 2634, 2641, 2853, 2872, 2899, 2902, 2933, 2938, 2990, 3032, 3103, 3158, 3292, 3447, 3517, 3525, 3632, 3665, 3686, 3830, 3857, 3886, 3930, 4160, 4175], 'Pi': [25, 32, 84, 95, 103, 165, 201, 261, 268, 320, 331, 339, 401, 437, 754, 1679, 1801, 2020, 2034, 2064, 2088, 2102, 2144, 2314, 2351, 3526, 4238, 4301], 'starvation,': [26, 262, 2352], 'we': [27, 65, 263, 301, 2353, 4166], 'investigated': [28, 264], 'the': [29, 122, 138, 174, 188, 198, 225, 231, 265, 358, 374, 410, 424, 434, 461, 467, 504, 575, 585, 612, 628, 654, 663, 692, 703, 711, 725, 734, 834, 993, 1044, 1124, 1216, 1344, 1372, 1440, 1480, 1746, 1805, 1838, 1844, 1855, 1866, 1872, 1909, 2016, 2028, 2039, 2070, 2101, 2139, 2161, 2302, 2324, 2344, 2357, 2418, 2429, 2488, 2494, 2546, 2549, 2619, 2657, 2662, 2668, 2743, 2831, 2880, 2891, 2900, 2909, 2918, 2935, 2991, 3191, 3199, 3204, 3215, 3227, 3241, 3262, 3305, 3325, 3329, 3351, 3362, 3416, 3437, 3473, 3493, 3500, 3520, 3562, 3566, 3592, 3597, 3601, 3604, 3614, 3641, 3645, 3648, 3657, 3673, 3676, 3754, 3824, 3852, 3887, 3891, 3915, 3931, 4057, 4061, 4064, 4086, 4095, 4138, 4144, 4182, 4221, 4226, 4232], 'correlation': [30, 266], 'between': [31, 121, 267, 357, 1442, 4067], 'deficiency-induced': [33, 269, 1802, 4083, 4239], 'changes': [34, 88, 144, 172, 211, 270, 324, 380, 408, 447, 485, 600, 751, 1177, 1702, 1777, 1803, 2166, 2319, 2322, 4084, 4240], 'transcriptome': [36, 272, 579, 996, 1481, 1921], 'proteome': [38, 274, 1483, 1742, 1773, 1806, 1923, 3495, 4087], 'profiles': [39, 275, 1447, 2326, 2380], 'Arabidopsis': [41, 277, 766, 790, 828, 884, 965, 994, 1074, 1661, 2444, 2446, 2471, 2495, 3306, 4089], 'roots.': [42, 278, 1255, 2445], 'Using': [43, 279, 1118, 4163, 4282], 'exhaustive': [44, 280], 'tandem': [45, 281, 514, 4114], 'mass': [46, 282, 515, 3109, 3545, 4115], 'spectrometry-based': [47, 283, 533], 'shotgun': [48, 284, 510, 1654], 'proteomics': [49, 285, 511, 534, 1655], 'whole-genome': [51, 287], 'RNA': [52, 288, 1657, 3708, 3728, 3749], 'sequencing': [53, 289, 580, 3741], 'generate': [55, 291], 'a': [56, 159, 221, 292, 395, 457, 480, 560, 602, 615, 633, 639, 647, 657, 687, 921, 1347, 1362, 1412, 1812, 2047, 2093, 2135, 2436, 2454, 2554, 2762, 2837, 2854, 2873, 2971, 3079, 3095, 3117, 3130, 3150, 3169, 3208, 3321, 3348, 3454, 3529, 3585, 3666, 3687, 3776, 3834, 3840, 4148, 4246, 4288], 'nearly': [57, 293, 4227], 'complete': [58, 222, 294, 458], 'catalog': [59, 295], 'of': [60, 74, 124, 149, 152, 162, 181, 210, 224, 296, 310, 360, 385, 388, 398, 417, 446, 460, 475, 584, 587, 593, 598, 624, 667, 691, 707, 710, 717, 727, 736, 744, 765, 786, 959, 964, 992, 999, 1073, 1126, 1175, 1205, 1240, 1336, 1346, 1351, 1365, 1371, 1411, 1476, 1562, 1622, 1653, 1697, 1748, 1775, 1811, 1829, 1837, 1846, 1857, 1868, 1875, 1895, 1911, 1920, 1929, 1944, 1998, 2007, 2019, 2030, 2041, 2050, 2059, 2072, 2095, 2138, 2163, 2222, 2247, 2304, 2323, 2346, 2350, 2359, 2366, 2393, 2407, 2421, 2431, 2440, 2470, 2487, 2576, 2628, 2653, 2656, 2659, 2670, 2690, 2789, 2857, 2876, 2948, 3000, 3172, 3226, 3240, 3252, 3267, 3328, 3379, 3385, 3458, 3486, 3565, 3600, 3603, 3607, 3656, 3669, 3690, 3727, 3747, 3766, 3781, 3823, 3836, 3842, 3851, 3933, 3946, 3982, 4063, 4088, 4137, 4143, 4195, 4220, 4231, 4270, 4291], 'expressed': [61, 82, 297, 318, 2312, 4055, 4299], 'mRNAs': [62, 79, 298, 315, 2360], 'proteins,': [64, 300, 1333, 3647, 3675], 'reliably': [66, 302], 'identified': [67, 303, 3505, 4167, 4199, 4212], '13,298': [68, 304, 4196], 'proteins': [69, 76, 163, 305, 312, 399, 478, 1816, 2362, 3297, 3569, 3635, 4177, 4197, 4210, 4256, 4275, 4286, 4294], '24,591': [71, 307], 'transcripts,': [72, 308], 'subsets': [73, 309], '356': [75, 311, 4285], '3106': [78, 314], 'were': [80, 89, 316, 325, 2381, 2451, 2491, 2505, 2532, 2551, 2616, 2631, 2680, 2705, 2718, 2746, 2772, 2813, 2921, 2978, 3003, 3012, 3026, 3045, 3065, 3085, 3127, 3185, 3259, 3290, 3302, 3341, 3364, 3422, 3445, 3466, 3477, 3515, 3577, 3621, 3697, 3742, 3761, 3773, 3861, 3878, 3884, 3926, 3989, 4091, 4099, 4107, 4158, 4211, 4265], 'differentially': [81, 317, 2311, 4054, 4298], 'during': [83, 111, 319, 347, 490, 503, 830, 3415], 'deficiency.': [85, 202, 321, 438, 2315], 'Most': [86, 322], 'dramatic': [87, 323], 'noticed': [90, 326], 'for': [91, 109, 133, 219, 327, 345, 369, 455, 577, 836, 1257, 1379, 1843, 1871, 2033, 2038, 2130, 2343, 2515, 2521, 2539, 2647, 2708, 2734, 2802, 2819, 2862, 2884, 2911, 3034, 3338, 3413, 3581, 3672, 3736, 3740, 3870, 3918, 3923, 4060, 4133, 4255, 4273, 4279], 'genes': [92, 328, 1076, 1244, 2306], 'involved': [93, 329], 'acquisition': [96, 332, 2116, 3206, 3239], 'processes': [99, 196, 335, 432, 682, 693, 2156], 'that': [100, 205, 227, 336, 441, 463, 679, 2122, 2141, 2340, 2397, 2403], 'either': [101, 337, 2633, 4045], 'liberate': [102, 338], 'or': [104, 340, 477, 492, 1972, 2640, 2781, 4047, 4205], 'bypass': [105, 341], 'Pi/ATP-consuming': [106, 342], 'metabolic': [107, 343, 1176, 1314, 1415, 1701, 1776, 2113], 'steps,': [108, 344], 'example': [110, 346], 'membrane': [112, 348], 'lipid': [113, 349, 2164], 'remodeling': [114, 350, 2162], 'glycolytic': [116, 352, 2168], 'carbon': [117, 353, 2169], 'flux.': [118, 354], 'The': [119, 355, 622, 1824, 2572, 2650, 2737, 2825, 2958, 3028, 3183, 3193, 3358, 3419, 3758, 3769, 3787, 3821, 3848, 4309], 'concordance': [120, 356], 'abundance': [123, 161, 216, 359, 397, 452, 1338, 1359, 1381, 1861, 1874, 2358, 3521, 4243], 'mRNA': [125, 361, 1358, 1528, 1933, 1964], 'its': [127, 363, 668, 2008], 'encoded': [128, 364], 'protein': [129, 189, 213, 365, 425, 449, 525, 1337, 1366, 1526, 1564, 1860, 1876, 1935, 1966, 2410, 2744, 2785, 2832, 2838, 2845, 3307, 3359, 3440, 3549, 3587, 3667, 3688, 4242], 'was': [130, 167, 184, 366, 403, 420, 2307, 2574, 2621, 2665, 2739, 2827, 2834, 2848, 2870, 2882, 2897, 2962, 3030, 3076, 3092, 3177, 3196, 3222, 3247, 3396, 3404, 3411, 3594, 3630, 3638, 3651, 3679, 3709, 3921, 4022, 4028, 4051, 4074, 4198, 4295], 'generally': [131, 367], 'high': [132, 368, 521, 603, 1380, 3254, 3539], 'highly': [134, 370], 'up-regulated': [135, 371, 3674], 'genes,': [136, 372], 'but': [137, 373, 2074, 2385, 3913], 'analysis': [139, 375, 882, 991, 1174, 1561, 1696, 1774, 1826, 1919, 2387, 4222], 'also': [140, 376, 1095, 2388], 'revealed': [141, 377, 2389], 'numerous': [142, 378], 'discordant': [143, 379, 1963], 'mRNA/protein': [146, 382], 'pairs,': [147, 383], 'indicative': [148, 384, 2392], 'divergent': [150, 386], 'regulation': [151, 387, 1856], 'transcription': [153, 389], 'post-transcriptional': [155, 391, 1976], 'processes.': [156, 392], 'In': [157, 177, 393, 413, 2025, 2334, 3061, 3560], 'particular,': [158, 394], 'decreased': [160, 396], 'upon': [164, 400, 493, 2313, 4300], 'not': [168, 404, 1361, 2328], 'closely': [169, 405], 'correlated': [170, 406], 'with': [171, 407, 520, 601, 2013, 2078, 2086, 2282, 2473, 2605, 2749, 2765, 2945, 2964, 2981, 3005, 3014, 3021, 3116, 3141, 3164, 3203, 3233, 3249, 3264, 3320, 3366, 3833, 3909, 4030, 4113, 4121, 4147, 4257], 'corresponding': [175, 411, 3664, 3685, 4174], 'mRNAs.': [176, 412], 'several': [178, 414, 2153, 2390, 2425], 'cases,': [179, 415], 'up-regulation': [180, 416], 'gene': [182, 418, 498, 677, 825, 887, 1210, 1477, 1623, 1897, 1916, 2367, 2399, 2408, 2441, 3317, 4050], 'activity': [183, 419, 499, 2368, 2442], 'observed': [185, 421], 'solely': [186, 422], 'at': [187, 423, 646, 1215, 1479, 2099, 2542, 2559, 2711, 2722, 2731, 2778, 2805, 2815, 2822, 2865, 2887, 2914, 2954, 3037, 3087, 3168, 3187, 3218, 3369, 3381, 3387, 3392, 3398, 3406, 3509, 3572, 3703, 3845, 3939, 4031, 4036, 4201, 4261], 'level,': [190, 426], 'adding': [191, 427, 2851], 'key': [195, 431], 'adaptation': [199, 435, 735, 1750], 'We': [203, 439, 2401], 'conclude': [204, 440], 'integrated': [206, 442, 1913, 2364, 3281], 'measurement': [207, 443], 'interpretation': [209, 445, 1828], 'transcript': [215, 451, 1312, 1858, 4021], 'are': [217, 228, 453, 464, 1954, 2035, 2076, 2120, 2341, 3490], 'mandatory': [218, 454, 1340], 'generating': [220, 456], 'inventory': [223, 459], 'components': [226, 462, 669], 'critical': [229, 465], 'response': [232, 468, 967, 1047, 1246, 1840, 3524], 'environmental': [234, 470, 494, 739, 2079], 'stimuli.': [235, 471], 'Bottom-up,': [472], 'high-throughput': [473], 'profiling': [474, 720, 1204, 1475, 1658, 2149, 2365], 'transcripts': [476, 1382], 'is': [479, 517, 747, 1328, 1339, 1360, 1926, 1994, 2046, 2066, 2134, 2327, 3280, 4223], 'powerful': [481], 'method': [482, 726, 3530], 'analyze': [484, 609, 3519], 'biological': [487, 681, 1326, 1930, 1974, 3019, 3469, 3513, 3575, 3590, 3615], 'processes,': [488, 2097], 'e.g.': [489], 'development': [491], 'perturbations.': [495], 'Methods': [496], 'examining': [497], 'have': [500, 619, 2091, 2151], 'improved': [501], 'dramatically': [502], 'past': [505], 'few': [506], 'years.': [507], 'Quantitative': [508, 1560], 'gel-free': [509], 'based': [512, 4077], 'on': [513, 1800, 1821, 1915, 2299, 2457, 2970, 3094, 3775, 4078, 4117], 'spectrometry': [516], 'now': [518], 'possible': [519], 'resolution,': [522], 'yielding': [523], 'detailed': [524], 'expression': [526, 599, 788, 826, 1446, 1478, 1529, 1624, 1898, 1924, 1967, 2303, 2379, 2411, 4260], 'maps': [527], '(1Ong': [528], 'S.E.': [529], 'Mann': [530, 3535], 'M.': [531, 774, 913, 954, 983, 1170, 1172, 1277, 1281, 1289, 1297, 1428, 1584, 1723, 1725, 1733, 1892, 2268, 3536], 'Mass': [532], 'turns': [535], 'quantitative.Nat.': [536], 'Chem.': [537, 2202], 'Biol.': [538, 565, 2201], '2005;': [539, 899, 1136, 1666, 2203], '1:': [540, 1137, 1491, 1536], '252-262Crossref': [541], 'PubMed': [542, 569, 798, 844, 902, 930, 975, 1008, 1054, 1089, 1139, 1226, 1267, 1320, 1420, 1455, 1498, 1543, 1574, 1638, 1669, 1715, 1757, 1790, 1903, 2211, 2229, 2258, 2293, 3555, 3816, 3904, 3972, 4015], 'Scopus': [543, 570, 799, 845, 903, 931, 976, 1009, 1055, 1090, 1140, 1190, 1227, 1268, 1321, 1421, 1456, 1499, 1544, 1575, 1639, 1670, 1716, 1758, 1791, 1904, 2212, 2230, 2259, 2294, 2482, 3556, 3817, 3905, 3973, 4016], '(1317)': [544], 'Google': [545, 572, 801, 847, 905, 933, 978, 1011, 1057, 1092, 1142, 1192, 1229, 1270, 1323, 1423, 1458, 1501, 1546, 1577, 1641, 1672, 1718, 1760, 1793, 1906, 2214, 2232, 2261, 2296, 2484, 3558, 3819, 3907, 3975, 4018], 'Scholar,': [546, 802, 848, 906, 934, 979, 1012, 1058, 1424, 1459, 1502, 1547, 1578, 1642, 1719, 1761, 2215, 2233, 2262], '2Liberman': [547], 'L.M.': [548], 'Sozzani': [549], 'R.': [550, 818, 860, 908, 936, 938, 981, 1148, 1393, 1399, 1403, 1473, 1559, 1610], 'Benfey': [551], 'P.N.': [552], 'Integrative': [553], 'systems': [554, 649], 'biology:': [555], 'an': [556, 699, 1912, 1995, 2335, 2414, 2458, 2474, 3104, 3782, 4118, 4134], 'attempt': [557, 2336], 'describe': [559], 'simple': [561], 'weed.Curr.': [562], 'Opin.': [563], 'Plant': [564, 3721], '2012;': [566], '15:': [567], '162-167Crossref': [568], '(30)': [571], 'Scholar).': [573, 1324, 1673, 1794, 2297, 2485, 3559, 3820, 3976, 4019], 'Similarly,': [574, 3671], 'technologies': [576], 'whole': [578, 658], '(RNA-seq)': [581], 'ameliorates': [582], 'some': [583], 'caveats': [586], 'DNA': [588], 'microarrays,': [589], 'permitting': [590], 'deep': [591], 'coverage': [592], 'transcriptomic': [594, 1443, 1945, 1952, 2148], 'landscapes': [595], 'detection': [597], 'dynamic': [604], 'range.': [605, 4151], 'Computational': [606], 'algorithms': [607], 'display': [611], 'data': [613, 746, 1659, 1798, 1832, 1925, 1953, 2412, 3334, 3790], 'biologically': [616], 'meaningful': [617, 1975], 'way': [618], 'become': [620], 'available.': [621], 'task': [623], 'assigning': [625], 'functions': [626], 'annotated': [629], 'genes/proteins,': [630], 'however,': [631], 'remains': [632, 1959], 'major': [634, 2036, 2048], 'challenge.': [635], 'As': [636], 'opposed': [637], 'reductionist': [640], 'approach': [641, 700, 1743], '(i.e.': [642, 4044], 'studying': [643], 'one': [644, 3480, 3589, 4041], 'gene/protein': [645], 'time),': [648], 'biology': [650], 'attempts': [651], 'address': [653], 'system': [655], 'as': [656, 724, 1099, 1982, 2461, 3596, 3699, 3991, 4024, 4053, 4297], 'order': [660], 'understand': [662, 1343], 'interdependence': [664], 'dynamics': [666], 'predict': [672], 'cellular': [673, 1839, 1873, 2143], 'behavior.': [674], 'Deciphering': [675], 'functional': [676, 1078], 'networks': [678, 963], 'mediate': [680], 'concert': [684], 'will': [685, 697], 'reveal': [686], 'more': [688, 3429], 'holistic': [689], 'view': [690, 1914], 'under': [694, 1703, 2348, 2562, 2808, 3499, 3714], 'study': [695, 1853], 'provide': [698], 'manipulate': [702], 'fitness': [704], 'performance': [706], 'plants.': [708], 'Because': [709, 1949, 2006], 'relatively': [712], 'low': [713, 1779, 2017, 2087], 'cost': [714], 'ease': [716], 'application,': [718], 'transcriptional': [719, 750, 881], 'has': [721, 1375, 1675], 'been': [722, 1376, 1676], 'adopted': [723], 'choice': [728], 'by': [729, 753, 1178, 1332, 1778, 1992, 2069, 2196, 2250, 2363, 2508, 2525, 2667, 2720, 2774, 2850, 2907, 2924, 3224, 3508, 3532, 3753, 3763, 3810, 3966, 4009, 4109, 4200, 4225], 'labs': [731], 'interrogate': [733], 'plants': [737, 2090, 2433, 2450, 2630, 2675, 2678, 4073, 4268], 'signals.': [740], 'A': [741, 879, 1740, 1851, 2128, 2190, 3176, 4020, 4049, 4193], 'large': [742], 'set': [743, 3397, 3405], 'genome-wide': [745, 880], 'available': [748], 'regarding': [749, 1678], 'induced': [752, 2195, 4274], 'deficiency,': [755], 'derived': [756], 'from': [757, 1660, 1682, 2493, 2673, 2998, 3009, 3156, 3343, 3472, 3640, 3711, 3730, 3744, 3828, 3855, 3863, 3873, 4069, 4171, 4251, 4287], 'microarray': [758, 2300], 'studies': [759, 2150], 'using': [760, 883, 1448, 1566, 2369, 2784, 2836, 3051, 3149, 3347, 3528, 3719, 3890, 3942, 4094], 'roots,': [761, 2423], 'shoots': [762, 829], 'seedlings': [764], '(3Wu': [767], 'P.': [768, 862, 870, 872], 'Ma': [769], 'L.': [770, 874, 876, 987, 1202, 1405, 1471, 1586, 2272, 2276, 3802, 3958, 4001], 'Hou': [771], 'X.': [772, 1022, 1769], 'Wang': [773], 'Wu': [775, 1025, 1294, 2240], 'Y.': [776, 940, 1763, 2179, 2185], 'Liu': [777, 1433, 1770], 'F.': [778, 1156, 1293, 1555, 1767], 'Deng': [779], 'X.W.': [780], 'starvation': [782, 832, 2198], 'triggers': [783], 'distinct': [784], 'alterations': [785, 2108, 2171], 'genome': [787, 3889], 'roots': [791, 1208, 1698, 2347, 2999, 3011, 3712, 3877, 4090], 'leaves.Plant': [793], 'Physiol.': [794, 840, 926, 1004, 1050, 1085, 1263, 1316, 2225], '2003;': [795, 841, 1187], '132:': [796, 842], '1260-1271Crossref': [797], '(368)': [800], '4Hammond': [803], 'J.P.': [804, 1103, 1602], 'Bennett': [805], 'M.J.': [806, 1590], 'Bowen': [807], 'H.C.': [808, 1295], 'Broadley': [809, 1104], 'M.R.': [810, 1105, 1727, 1731], 'Eastwood': [811], 'D.C.': [812], 'May': [813, 1116], 'S.T.': [814, 1117], 'Rahn': [815], 'C.': [816, 1014, 1196, 1688, 2270, 2467], 'Swarup': [817], 'Woolaway': [819], 'K.E.': [820], 'White': [821, 1114], 'P.J.': [822, 1115], 'Changes': [823], 'phosphate': [831, 893, 1000, 1082, 1213, 1983, 2197, 2248, 2330, 2332, 2639], 'potential': [835], 'developing': [837, 2131], 'smart': [838], 'plants.Plant': [839, 925, 2224], '578-596Crossref': [843], '(334)': [846], '5Misson': [849], 'J.': [850, 856, 1024, 1109, 1146, 1154, 1200, 1301, 1395, 1469, 1598, 1694, 1886, 1888, 3534], 'Raghothama': [851], 'K.G.': [852], 'Jain': [853], 'A.': [854, 864, 1018, 1030, 1287, 1291, 1649, 1692, 2266, 2274, 3796, 3952, 3995], 'Jouhet': [855], 'Block': [857], 'M.A.': [858, 1283, 2465], 'Bligny': [859], 'Ortet': [861], 'Creff': [863, 2265], 'Somerville': [865, 2466], 'S.': [866, 1016, 1150, 1168, 1426, 1644, 1721, 1771, 2264], 'Rolland': [867], 'N.': [868, 1166, 1882], 'Doumas': [869], 'Nacry': [871], 'Herrerra-Estrella': [873], 'Nussaume': [875, 2275], 'Thibaud': [877], 'M.C.': [878, 1588], 'thaliana': [885, 1662, 2448, 2472], 'Affymetrix': [886], 'chips': [888], 'determined': [889, 2835], 'responses': [891, 1211, 1681], 'deprivation.Proc.': [894], 'Natl.': [895], 'Acad.': [896], 'Sci.': [897], 'U.S.A.': [898], '102:': [900], '11934-11939Crossref': [901], '(705)': [904], '6Bari': [907], 'Datt': [909], 'Pant': [910, 943], 'B.': [911, 948, 1436, 1467, 1551, 1604, 1735, 1878, 3804, 3960, 4003], 'Stitt': [912, 953], 'Scheible': [914, 955], 'W.R.': [915], 'PHO2,': [916], 'microRNA399,': [917], 'PHR1': [919], 'define': [920], 'phosphate-signaling': [922], 'pathway': [923], '2006;': [927, 2255], '141:': [928], '988-999Crossref': [929], '(850)': [932], '7Morcuende': [935], 'Bari': [937], 'Gibon': [939], 'Zheng': [941], 'W.': [942, 1070, 1430, 1651, 1890], 'B.D.': [944], 'Bläsing': [945], 'O.': [946, 1279], 'Usadel': [947], 'Czechowski': [949, 1284], 'T.': [950, 1152, 1164, 1285, 1387, 1434, 1465, 1646, 2183, 2278], 'Udvardi': [951, 1302], 'M.K.': [952, 1303], 'W.R..': [956], 'Genome-wide': [957, 990], 'reprogramming': [958], 'metabolism': [960, 2003, 2430], 'regulatory': [962, 1241, 1847], 'phosphorus.Plant': [969], 'Cell': [970, 1185], 'Environ.': [971, 1186], '2007;': [972, 1005, 1317, 1712, 2290], '30:': [973], '85-112Crossref': [974], '(427)': [977], '8Müller': [980], 'Morant': [982], 'Jarmer': [984], 'H.': [985, 1026, 1594, 1765, 2189], 'Nilsson': [986], 'Nielsen': [988], 'T.H.': [989], 'leaf': [995], 'reveals': [997, 1209], 'interaction': [998], 'sugar': [1002], 'metabolism.Plant': [1003], '143:': [1006], '156-171Crossref': [1007], '(252)': [1010], '9Marchive': [1013], 'Yehudai-Resheff': [1015], 'Germain': [1017], 'Fei': [1019], 'Z.': [1020], 'Jiang': [1021], 'Judkins': [1023], 'Fernie': [1027], 'A.R.': [1028], 'Fait': [1029], 'Stern': [1031], 'D.B.': [1032], 'Abnormal': [1033], 'physiological': [1034, 2419], 'molecular': [1036], 'mutant': [1037], 'phenotypes': [1038], 'link': [1039], 'chloroplast': [1040], 'polynucleotide': [1041], 'phosphorylase': [1042], 'phosphorus': [1045, 1179, 1704, 1780], 'deprivation': [1046], 'Arabidopsis.Plant': [1049, 2253], '2009;': [1051, 1754], '151:': [1052], '905-924Crossref': [1053], '(38)': [1056], '10Lin': [1059], 'W.D.': [1060], 'Liao': [1061], 'Y.Y.': [1062], 'Yang': [1063, 1691], 'T.J.': [1064, 1068, 1461, 1516, 2235], 'Pan': [1065], 'C.Y.': [1066], 'Buckhout': [1067], 'Schmidt': [1069], 'Coexpression-based': [1071], 'clustering': [1072], 'root': [1075, 1311, 2173, 2287], 'predicts': [1077], 'modules': [1079], 'early': [1081], 'signaling.Plant': [1084], '2011;': [1086, 1787, 1900, 2226], '155:': [1087], '1383-1402Crossref': [1088], '(102)': [1091], 'Scholar)': [1093, 1271, 3908], 'other': [1096], 'species': [1097, 2125], 'such': [1098], 'wild': [1100], 'mustard': [1101], '(11Hammond': [1102], 'Craigon': [1106], 'D.J.': [1107], 'Higgins': [1108], 'Emmerson': [1110], 'Z.F.': [1111], 'Townsend': [1112], 'H.J.': [1113], 'genomic': [1119, 1407, 1618], 'DNA-based': [1120], 'probe-selection': [1121], 'improve': [1123], 'sensitivity': [1125], 'high-density': [1127], 'oligonucleotide': [1128], 'arrays': [1129], 'when': [1130, 4026], 'applied': [1131], 'heterologous': [1133], 'species.Plant': [1134], 'Methods.': [1135, 3812, 3968, 4011], '10Crossref': [1138], '(67)': [1141], 'Scholar),': [1143, 1193, 1230, 1907], 'rice': [1144, 1182, 1749], '(12Wasaki': [1145], 'Yonetani': [1147], 'Kuroda': [1149], 'Shinano': [1151], 'Yazaki': [1153], 'Fujii': [1155], 'Shimbo': [1157], 'K.': [1158, 1160, 1162, 1686, 1690, 1729, 2181, 2187, 2237, 3800, 3956, 3999], 'Yamamoto': [1159], 'Sakata': [1161], 'Sasaki': [1163], 'Kishimoto': [1165], 'Kikuchi': [1167], 'Yamagishi': [1169], 'Osaki': [1171], 'Transcriptomic': [1173, 2376], 'stress': [1180, 1307, 1781], 'roots.Plant': [1184], '26:': [1188, 3553], '1515-1523Crossref': [1189], '(186)': [1191], 'maize': [1194, 1707], '(13Calderon-Vazquez': [1195], 'Ibarra-Laclette': [1197], 'E.': [1198], 'Caballero-Perez': [1199], 'Herrera-Estrella': [1201], 'Transcript': [1203], 'Zea': [1206], 'mays': [1207, 1709], 'plant-': [1217], 'species-specific': [1219], 'levels.J.': [1220], 'Exp.': [1221], 'Bot.': [1222], '2008;': [1223, 1452, 3552, 3813, 3969, 4012], '59:': [1224], '2479-2497Crossref': [1225], '(109)': [1228], 'tomato': [1231, 1254], '(14Wang': [1232], 'Y.H.': [1233], 'Garvin': [1234], 'D.F.': [1235], 'Kochian': [1236], 'L.V.': [1237], 'Rapid': [1238], 'induction': [1239], 'transporter': [1243], 'phosphorus,': [1248], 'potassium,': [1249], 'iron': [1251], 'deficiencies': [1252], 'Evidence': [1256], 'cross': [1258], 'talk': [1259], 'root/rhizosphere-mediated': [1261], 'signals.Plant': [1262], '2002;': [1264, 1490, 1535, 3901], '130:': [1265], '1361-1370Crossref': [1266], '(241)': [1269], 'bean': [1273], '(15Hernández': [1274], 'G.': [1275, 1504, 1884], 'Ramirez': [1276], 'Valdes-Lopez': [1278], 'Tesfaye': [1280], 'Graham': [1282], 'Schlereth': [1286], 'Wandrey': [1288], 'Erban': [1290], 'Cheung': [1292], 'Lara': [1296], 'Town': [1298], 'C.D.': [1299], 'Kopka': [1300], 'Vance': [1304], 'C.P.': [1305], 'Phosphorus': [1306], 'common': [1309], 'bean:': [1310], 'responses.Plant': [1315], '144:': [1318], '752-767Crossref': [1319], '(254)': [1322], 'However,': [1325], 'function': [1327, 1345, 2345], 'chiefly': [1329], 'carried': [1330, 1819], 'out': [1331, 1820], 'determination': [1335], 'fully': [1342], 'system.': [1348], 'Generally,': [1349], 'because': [1350, 1810, 1928, 2655], 'post-translational': [1352], 'turnover': [1353], 'alternate': [1355], 'translation': [1356], 'efficiency,': [1357], 'reliable': [1363], 'proxy': [1364], 'abundance,': [1367], 'modest': [1369], 'congruency': [1370], 'two': [1373, 1783, 3022, 3373, 3474, 3512, 3574, 4038, 4203, 4207], 'levels': [1374, 1484, 1836], 'reported': [1377], 'except': [1378], '"molecular': [1384, 2405], 'machines"': [1385], '(16Ideker': [1386], 'Thorsson': [1388, 1595], 'V.': [1389, 1596], 'Ranish': [1390], 'J.A.': [1391], 'Christmas': [1392], 'Buhler': [1394], 'Eng': [1396, 1468, 1597], 'J.K.': [1397], 'Bumgarner': [1398], 'Goodlett': [1400, 1599], 'D.R.': [1401], 'Aebersold': [1402, 1472, 1558, 1609], 'Hood': [1404, 1470, 1615], 'Integrated': [1406, 1617], 'proteomic': [1409, 1445, 1620, 1683, 1947, 1950, 2325, 2378], 'analyses': [1410, 1621], 'systematically': [1413], 'perturbed': [1414], 'network.Science.': [1416], '2001;': [1417], '292:': [1418], '929-934Crossref': [1419], '(1650)': [1422], '17Rogers': [1425], 'Girolami': [1427], 'Kolch': [1429], 'Waters': [1431], 'K.M.': [1432], 'Thrall': [1435], 'Wiley': [1437], 'H.S.': [1438], 'Investigating': [1439], 'correspondence': [1441], 'coupled': [1449, 3102], 'cluster': [1450], 'models.Bioinformatics.': [1451], '24:': [1453], '2894-2900Crossref': [1454], '(112)': [1457], '18Griffin': [1460], 'Gygi': [1462], 'S.P.': [1463, 1549], 'Ideker': [1464], 'Rist': [1466, 1550], 'Complementary': [1474], 'Saccharomyces': [1486], 'cerevisiae.Mol.': [1487], 'Cell.': [1488, 1533, 1628, 2254], 'Proteomics.': [1489, 1534, 1629], '323-333Abstract': [1492], 'Full': [1493, 1495, 1538, 1540, 1633, 1635, 2206, 2208], 'Text': [1494, 1496, 1539, 1541, 1634, 1636, 2207, 2209], 'PDF': [1497, 1542, 1637, 2210], '(563)': [1500], '19Chen': [1503], 'Gharib': [1505], 'T.G.': [1506], 'Huang': [1507], 'C.C.': [1508, 2241], 'Taylor': [1509], 'J.M.': [1510], 'Misek': [1511], 'D.E.': [1512], 'Kardia': [1513], 'S.L.': [1514], 'Giordano': [1515], 'Iannettoni': [1517], 'M.D.': [1518], 'Orringer': [1519], 'M.B.': [1520], 'Hanash': [1521], 'S.M.': [1522], 'Beer': [1523], 'D.G.': [1524], 'Discordant': [1525], 'lung': [1531], 'adenocarcinomas.Mol.': [1532], '304-313Abstract': [1537], '(784)': [1545], '20Gygi': [1548], 'Gerber': [1552], 'S.A.': [1553], 'Turecek': [1554], 'Gelb': [1556], 'M.H.': [1557], 'complex': [1563], 'mixtures': [1565, 3126], 'isotope-coded': [1567], 'affinity': [1568], 'tags.Nat.': [1569], 'Biotechnol.': [1570, 3551], '1999;': [1571], '17:': [1572], '994-999Crossref': [1573], '(4345)': [1576], '21Tian': [1579], 'Q.': [1580], 'Stepaniants': [1581], 'S.B.': [1582], 'Mao': [1583], 'Weng': [1585], 'Feetham': [1587], 'Doyle': [1589], 'Yi': [1591], 'E.C.': [1592], 'Dai': [1593], 'D.': [1600, 1880, 3408], 'Berger': [1601], 'Gunter': [1603], 'Linseley': [1605], 'P.S.': [1606], 'Stoughton': [1607], 'R.B.': [1608], 'Collins': [1611], 'S.J.': [1612], 'Hanlon': [1613], 'W.A.': [1614], 'L.E.': [1616], 'mammalian': [1626, 1863, 1896, 3808, 3964, 4007], 'cells.Mol.': [1627], '2004;': [1630], '3:': [1631], '960-969Abstract': [1632], '(644)': [1640], '22Baginsky': [1643], 'Kleffmann': [1645], 'von': [1647], 'Zychlinski': [1648], 'Gruissem': [1650], 'Analysis': [1652, 3945], 'chloroplasts.J.': [1663], 'Proteome': [1664, 3283], 'Res.': [1665, 3900], '4:': [1667], '637-640Crossref': [1668], '(37)': [1671], 'Much': [1674], 'learned': [1677], 'approaches': [1684], '(23Li': [1685], 'Xu': [1687, 1766], 'Zhang': [1689, 1693, 1768], 'Proteomic': [1695, 2146], 'deficit': [1705], '(Zea': [1708], 'L.)': [1710, 2449], 'plants.Proteomics.': [1711], '7:': [1713], '1501-1512Crossref': [1714], '(89)': [1717], '24Torabi': [1720], 'Wissuwa': [1722], 'Heidari': [1724], 'Naghavi': [1726], 'Gilany': [1728], 'Hajirezaei': [1730], 'Omidi': [1732], 'Yazdi-Samadi': [1734], 'Ismail': [1736], 'A.M.': [1737], 'Salekdeh': [1738], 'G.H.': [1739], 'comparative': [1741], 'decipher': [1745], 'mechanism': [1747], 'phosphorous': [1752], 'deficiency.Proteomics.': [1753], '9:': [1755], '159-170Crossref': [1756], '(75)': [1759], '25Yao': [1762], 'Sun': [1764], 'Comparative': [1772], 'Brassica': [1784], 'napus': [1785], 'genotypes.Planta.': [1786], '233:': [1788], '523-537Crossref': [1789], '(59)': [1792], 'Despite': [1795], 'these': [1796, 2318], 'efforts,': [1797], 'sets': [1799, 1833], 'remained': [1807], 'somewhat': [1808], 'patchy,': [1809], 'skew': [1813], 'toward': [1814], 'high-abundant': [1815], 'work': [1818], 'different': [1822, 1835, 1932, 2394, 3702, 4259], 'species.': [1823], 'parallel': [1825], 'disparate': [1830], '"omics"': [1831], 'integrate': [1834], 'allows': [1842, 4132], 'uncovering': [1845, 2424], 'mechanisms': [1848, 2140, 2396], 'beyond': [1849], 'transcription.': [1850], 'recent': [1852], 'addressing': [1854], 'cells': [1864], 'highlights': [1865], 'importance': [1867, 1910, 2000], 'translational': [1869], 'control': [1870, 2142, 2395, 2643, 2674, 3001, 3043, 3715], '(26Schwanhäusser': [1877], 'Busse': [1879], 'Li': [1881], 'Dittmar': [1883], 'Schuchhardt': [1885], 'Wolf': [1887], 'Chen': [1889], 'Selbach': [1891], 'Global': [1893], 'quantification': [1894, 3414, 4142], 'control.Nature.': [1899], '473:': [1901], '337-342Crossref': [1902], '(4091)': [1905], 'underlining': [1908], 'activity.': [1917, 2400], 'Parallel': [1918], 'challenging': [1927], '(e.g.': [1931, 1940], 'stability)': [1936], 'technical': [1938, 3023, 3475], 'biases': [1939], 'differences': [1941, 2355], 'resolution': [1943, 3219], 'profiles).': [1948], 'often': [1955, 1960, 2021, 2067], 'collected': [1956, 2719, 3066, 3729], 'separately,': [1957], 'it': [1958, 4027], 'unclear': [1961], 'whether': [1962], 'merely': [1968], 'reflects': [1969], 'experimental': [1970], 'noise': [1971], 'represents': [1973], 'regulation.': [1977], 'Phosphorous,': [1978], 'mainly': [1979], 'taken': [1980], 'up': [1981], '1The': [1985], 'abbreviations': [1986, 1989], 'used': [1987, 1990, 3291, 3337, 3446, 3631, 3735, 4159], 'are:PiphosphateSQDGsulfoquinovosyldiacylglycerol.1The': [1988], 'are:PiphosphateSQDGsulfoquinovosyldiacylglycerol.': [1991], 'plants,': [1993, 2159], 'essential': [1996], 'macronutrient': [1997], 'crucial': [1999], 'signaling,': [2002], 'photosynthesis.': [2005], 'tendency': [2009], 'form': [2011], 'complexes': [2012], 'soil': [2014], 'cations,': [2015], 'bioavailability': [2018], 'limits': [2022], 'growth.': [2024], 'natural': [2026], 'ecosystem,': [2027], 'availability': [2029, 2065], 'demand': [2032], 'determinants': [2037], 'composition': [2040], 'communities.': [2043], 'cause': [2049], 'yield': [2052], 'losses': [2053], 'crops': [2055], 'poor': [2057], 'quality': [2058], 'edible': [2060], 'parts.': [2062], 'Low': [2063], 'corrected': [2068, 2666], 'use': [2071, 2118], 'fertilizers': [2073], 'which': [2075, 3279, 4252], 'associated': [2077], 'damages': [2080], 'substantial': [2082], 'costs.': [2083], 'cope': [2085], 'availability,': [2089], 'evolved': [2092], 'plethora': [2094], 'adaptive': [2096], 'aimed': [2098], 'improving': [2100], 'uptake': [2103], 'remobilization,': [2105], 'involve': [2107], 'developmental': [2110], 'programs': [2111], 'networks.': [2114], 'efficiency': [2119], 'traits': [2121], 'vary': [2123], 'among': [2124], 'cultivars.': [2127], 'prerequisite': [2129], 'Pi-efficient': [2132], 'germplasm': [2133], 'thorough': [2136, 2715], 'understanding': [2137], 'homeostasis.': [2145], 'uncovered': [2152], 'robustly': [2154], 'changed': [2155], 'Pi-deficient': [2158, 2422, 2432, 2677, 3010, 3717], 'including': [2160], 'metabolism,': [2165], 'flux,': [2170], 'development,': [2174], 'signaling': [2176], 'pathways': [2177], '(27Nakamura': [2178], 'Awai': [2180], 'Masuda': [2182], 'Yoshioka': [2184], 'Takamiya': [2186], 'Ohta': [2188], 'phosphatidylcholine-hydrolyzing': [2192], 'phospholipase': [2193], 'C': [2194], 'Arabidopsis.J.': [2200], '280:': [2204], '7469-7476Abstract': [2205], '(194)': [2213], '28Plaxton': [2216], 'W.C.': [2217], 'Tran': [2218], 'H.T.': [2219], 'Metabolic': [2220], 'adaptations': [2221], 'phosphate-starved': [2223], '156:': [2227], '1006-1015Crossref': [2228], '(372)': [2231], '29Chiou': [2234], 'Aung': [2236], 'Lin': [2238], 'S.I.': [2239], 'Chiang': [2242], 'S.F.': [2243], 'Su': [2244], 'C.L.': [2245], 'Regulation': [2246], 'homeostasis': [2249], 'MicroRNA': [2251], '18:': [2256], '412-421Crossref': [2257], '(660)': [2260], '30Svistoonoff': [2263], 'Reymond': [2267], 'Sigoillot-Claude': [2269], 'Ricaud': [2271], 'Blanchet': [2273], 'Desnos': [2277], 'Root': [2279], 'tip': [2280], 'contact': [2281], 'low-phosphate': [2283], 'media': [2284, 2637, 2644, 2664], 'reprograms': [2285], 'architecture.Nat.': [2288], 'Genet.': [2289, 2478], '39:': [2291], '792-796Crossref': [2292], '(433)': [2295], 'Based': [2298], 'experiments,': [2301, 4208], '∼1000': [2305], 'estimated': [2308], 'be': [2310], 'How': [2316], 'tightly': [2317], 'correspond': [2320], 'known.': [2329], 'sulfoquinovosyldiacylglycerol.': [2331, 2333], 'identify': [2338, 3294, 4161], 'nodes': [2339], 'important': [2342], 'conditions': [2349, 3718], 'cataloged': [2354, 4093], 'RNA-seq': [2370], 'high-resolution': [2372, 3052], 'quantitative': [2373], 'iTRAQ': [2374, 2982, 3390, 3409, 4096, 4145], 'proteomics.': [2375], 'remarkably': [2382], 'well': [2383], 'correlated,': [2384], 'our': [2386], 'exceptions': [2391], 'dictate': [2398], 'argue': [2402], 'this': [2404, 3695, 4164, 4283], 'compendium"': [2406], 'provides': [2413, 2435], 'informative': [2415], 'readout': [2416], 'about': [2417], 'state': [2420], 'comprehensive': [2437], 'reference': [2438], 'map': [2439], '(Arabidopsis': [2447], 'grown': [2452, 2558, 2646, 3713], 'chamber': [2456, 2556], 'agar-based': [2459], 'medium': [2460, 2573], 'previously': [2462], 'described': [2463, 3531, 3992], '(31Estelle': [2464], 'Auxin-resistant': [2468], 'mutants': [2469], 'altered': [2475], 'morphology.Mol.': [2476], 'Gen.': [2477], '1987;': [2479], '206:': [2480], '200-206Crossref': [2481], '(485)': [2483], 'Seeds': [2486, 2504, 2531], 'Col-0': [2489], 'accession': [2490], 'obtained': [2492, 3879], 'Biological': [2496], 'Resource': [2497], 'Center': [2498], '(ABRC,': [2499], 'Ohio': [2500], 'State': [2501], 'University,': [2502], 'Columbus).': [2503], 'surface': [2506], 'sterilized': [2507], 'immersing': [2509], 'them': [2510], '5%': [2512], '(v/v)': [2513, 2702, 2754], 'NaOCl': [2514], '5': [2516, 3057, 3157, 3745], 'min': [2517, 2821, 3155], '70%': [2519], 'ethanol': [2520], '7': [2522], 'min,': [2523], 'followed': [2524, 3223, 3792], 'four': [2526], 'rinses': [2527], 'sterile': [2529], 'water.': [2530, 3182], 'placed': [2533], 'onto': [2534, 3129], 'Petri': [2535], 'dishes': [2536], 'kept': [2538], '1': [2540, 2757, 2803, 2863, 2885, 2912, 2930, 3035], 'd': [2541], '4': [2543, 2732, 3188], '°C': [2544, 2561, 2713, 2733, 2780, 2807, 2956, 3189], 'dark,': [2547], 'after': [2548, 2714, 3462], 'plates': [2550], 'transferred': [2552, 2632], '21': [2560], 'continuous': [2563], 'illumination': [2564], '(50': [2565], 'μmol': [2566], 'm−2': [2567], 's−1,': [2568], 'Philips': [2569], 'TL': [2570], 'lamps).': [2571], 'composed': [2575, 2788], '(mm):': [2577], 'KNO3': [2578], '(5),': [2579], 'MgSO4': [2580], '(2),': [2581, 2584], 'Ca': [2582], '(NO3)2': [2583], 'KH2PO4': [2585, 2660], '(2.5),': [2586], '(μm):': [2587], 'H3BO3': [2588], '(70),': [2589], 'MnCl2': [2590], '(14),': [2591], 'ZnSO4': [2592], '(1),': [2593], 'CuSO4': [2594], '(0.5),': [2595], 'NaCl': [2596], '(10),': [2597], 'Na2MoO4': [2598], '(0.2)': [2599], '40': [2601, 2877, 2946], 'μm': [2602, 3132], 'FeEDTA,': [2603], 'solidified': [2604], '0.3%': [2606], 'Phytagel': [2607], '(Sigma-Aldrich).': [2608], 'Sucrose': [2609], '(43': [2610], 'mm)': [2611, 2896], '4.7': [2613], 'mm': [2614, 2758, 2794, 2859, 2926, 2931, 3135], 'Mes': [2615], 'included': [2617], 'pH': [2620, 2797], 'adjusted': [2622], '5.5.': [2624], 'After': [2625], '10': [2626, 2823, 2858, 3228, 3399], 'days': [2627], 'precultivation,': [2629], 'fresh': [2635, 2642], 'agar': [2636], 'without': [2638, 2768], '3': [2648], 'days.': [2649], 'lower': [2651], 'concentration': [2652, 2833, 2856, 2875, 2937], 'potassium': [2654], 'absence': [2658], 'Pi-free': [2663], 'addition': [2669], 'KCl.': [2671], 'Roots': [2672], '(13-day-old)': [2679], 'ground': [2681], 'liquid': [2683, 4110], 'nitrogen': [2684], 'suspended': [2686], '10×': [2688], 'volume': [2689], 'precooled': [2691], 'acetone': [2692, 2751, 2767], '(−20': [2693], '°C)': [2694], 'containing': [2695, 2752, 3324], '10%': [2696, 2965], '(w/v)': [2697], 'trichloroacetic': [2698], 'acid': [2699, 2967, 3180], '0.07%': [2701, 2753], '2-mercaptoethanol.': [2703, 2769], 'Proteins': [2704, 2717, 2920, 3504, 4098], 'then': [2706, 2828, 2922, 2979], 'precipitated': [2707], '2': [2709], 'h': [2710, 2804, 2864, 2886, 2913, 3036], '−20': [2712], 'mixing.': [2716], 'centrifuging': [2721], '35,000': [2723], '×': [2724, 2817, 3133, 3661], 'g': [2725, 2818], '(JA-20': [2726], '108': [2727], 'rotor;': [2728], 'Beckman': [2729], 'J2-HS)': [2730], '30': [2735], 'min.': [2736], 'supernatant': [2738, 2826], 'carefully': [2740], 'removed,': [2741], 'pellets': [2745, 2771], 'washed': [2747], 'twice': [2748], 'cold': [2750, 2766], '2-mercaptoethanol': [2755], 'phenylmethanesulfonyl': [2759], 'fluoride': [2760], 'third': [2763], 'time': [2764], 'Protein': [2770, 2811, 3692], 'dried': [2773], 'lyophilization': [2775], 'stored': [2777, 3086], '−80': [2779, 3088], 'immediately': [2782], 'extracted': [2783, 2997, 3710], 'extraction': [2786, 2974], 'buffer': [2787], '6': [2790, 2806], 'm': [2791, 2942], 'urea,': [2792], '50': [2793, 2925], 'triethylammonium': [2795, 2927], 'bicarbonate,': [2796], '8.5,': [2798], '2%': [2800], '3-[(3-cholamidopropyl)dimethylammonio]propanesulfonate': [2801], 'constant': [2809], 'shaking.': [2810], 'extracts': [2812], 'centrifuged': [2814], '19,000': [2816], '20': [2820], '°C.': [2824, 3089], 'collected,': [2829], 'assay': [2839], 'kit': [2840, 3723], '(Pierce,': [2841], 'Rockford,': [2842], 'IL).': [2843], 'Total': [2844, 3707], '(100': [2846], 'μg)': [2847], 'reduced': [2849], 'dithiothreitol': [2852, 2894], 'final': [2855, 2874, 3071, 3074], 'incubated': [2861, 2883], 'room': [2866, 2888, 2915, 3038], 'temperature.': [2867, 3039], 'Subsequently,': [2868, 3040], 'iodoacetamide': [2869, 2906], 'added': [2871, 2898], 'mm,': [2878], 'mixture': [2881, 2901, 2910], 'temperature': [2889, 2916], 'dark.': [2892, 2919], 'Then,': [2893], '(10': [2895], 'consume': [2903], 'any': [2904], 'free': [2905], 'incubating': [2908], 'diluted': [2923], 'bicarbonate': [2928], 'CaCl2': [2932], 'reduce': [2934], 'urea': [2936], 'less': [2939, 3459], 'than': [2940, 3430, 3460], '0.6': [2941], 'digested': [2944, 4101], 'μg': [2947, 3746], 'modified': [2949], 'trypsin': [2950, 3367], '(Promega,': [2951], 'Madison,': [2952], 'WI)': [2953], '37': [2955], 'overnight.': [2957], 'resulting': [2959, 3770], 'peptide': [2960, 3231, 3394, 3427, 3540, 3609], 'solution': [2961], 'acidified': [2963], 'trifluoroacetic': [2966], 'desalted': [2969], 'C18': [2972, 3142], 'solid-phase': [2973], 'cartridge.': [2975], 'Desalted': [2976], 'peptides': [2977, 3044, 3444, 4106, 4139, 4170, 4204], 'labeled': [2980, 3004, 3013], 'reagents': [2983], '(Applied': [2984], 'Biosystems,': [2985], 'Foster': [2986], 'City,': [2987], 'CA)': [2988], 'according': [2989], "manufacturer's": [2992], 'instructions.': [2993], 'Control': [2994], 'samples': [2995, 3008, 3184, 4068, 4234], '(proteins': [2996], 'plants)': [3002], 'reagent': [3006, 3015], '114;': [3007], '117.': [3016], 'Three': [3017], 'independent': [3018, 3732], 'experiments': [3020, 3733, 4039, 4184, 4216], 'repeats': [3024, 3476, 3514, 3576], 'each': [3025, 3871, 3919], 'performed.': [3027, 3467], 'reaction': [3029], 'allowed': [3031], 'proceed': [3033], 'treated': [3041, 3874, 4046, 4070], 'combined': [3046, 3068, 3478, 4112], 'further': [3048, 3518], 'fractionated': [3049], 'offline': [3050], 'cation-exchange': [3053], 'chromatography': [3054, 3091, 4111], '(PolySulfoethyl': [3055], 'A,': [3056], 'μm,': [3058], '200-Å': [3059], 'bead).': [3060], 'total,': [3062], '35': [3063], 'fractions': [3064], 'into': [3069, 3479], '16': [3070], 'fractions.': [3072], 'Each': [3073], 'fraction': [3075], 'lyophilized': [3077], 'centrifugal': [3080], 'speed': [3081], 'vacuum': [3082], 'concentrator.': [3083], 'Samples': [3084], 'Liquid': [3090], 'performed': [3093], 'nanoACQUITY': [3096, 3136], 'UPLC': [3097, 3137], 'System': [3098], '(Waters,': [3099, 3144], 'Milford,': [3100, 3145], 'MA)': [3101, 3114, 3146], 'LTQ': [3105, 3194, 4119], 'Orbitrap': [3106, 3195, 3216, 3263, 4120], 'Velos': [3107], 'hybrid': [3108], 'spectrometer': [3110], '(Thermo': [3111], 'Scientific,': [3112], 'Waltham,': [3113], 'equipped': [3115], 'PicoView': [3118], 'nanospray': [3119], 'interface': [3120], '(New': [3121], 'Objective,': [3122], 'Woburn,': [3123], 'MA).': [3124], 'Peptide': [3125], 'loaded': [3128], '75': [3131], '250': [3134, 3829], 'BEH130': [3138], 'column': [3139], 'packed': [3140], 'resin': [3143], 'separated': [3148], 'segmented': [3151], 'gradient': [3152], '120': [3154], '40%': [3159], 'solvent': [3160], 'B': [3161], '(95%': [3162], 'acetonitrile': [3163], '0.1%': [3165, 3178], 'formic': [3166, 3179], 'acid)': [3167], 'flow': [3170], 'rate': [3171, 3457], '300': [3173, 3831], 'nl/min.': [3174], 'Solvent': [3175], 'maintained': [3186], 'autosampler.': [3192], 'operated': [3197], 'positive': [3200], 'ion': [3201], 'mode': [3202], 'following': [3205, 3750], 'cycle:': [3207], 'full': [3209], 'scan': [3210, 4150], '(m/z': [3211], '350∼1600)': [3212], 'recorded': [3213, 3938], 'analyzer': [3217], 'R': [3220], '60,000': [3221], 'MS/MS': [3225, 3402, 3484], 'most': [3229], 'intense': [3230], 'ions': [3232, 3258], 'collision-induced': [3234, 3237, 3256, 4127], 'dissociation-high': [3235], 'energy': [3236, 3251, 3255, 3266], 'dissociation': [3238, 3246, 4124, 4128], 'same': [3242], 'precursor': [3243], 'ion.': [3244], 'Collision-induced': [3245], 'done': [3248], 'collision': [3250, 3265], '35%.': [3253], 'dissociation-generated': [3257], 'detected': [3260, 4029], '45%.': [3268], 'Two': [3269, 4152], 'search': [3270, 3417, 3420, 4153], 'algorithms,': [3271, 4154], 'Mascot': [3272, 4155], '(version': [3273, 3286], '2.2.06,': [3274], 'Matrix': [3275], 'Science)': [3276], 'SEQUEST,': [3278, 4157], 'Discoverer': [3284], 'software': [3285], '1.3.0.339,': [3287], 'Thermo': [3288], 'Scientific),': [3289], 'simultaneously': [3293], 'quantify': [3296, 3448], '(supplemental': [3298, 4235], 'Fig.': [3299, 4236], 'S2).': [3300], 'Searches': [3301], 'made': [3303], 'against': [3304], 'database': [3308, 3323, 3339, 3363, 3464, 3496], '(TAIR10': [3309], '20110103,': [3310], '27416': [3311], 'sequences;': [3312], 'ftp://ftp.arabidopsis.org/home/tair/Sequences/blast_datasets/TAIR10_blastsets/TAIR10': [3313], 'pep': [3314], '20110103': [3315], 'representative': [3316], 'model)': [3318], 'concatenated': [3319], 'decoy': [3322, 3463], 'randomized': [3326], 'sequences': [3327, 3360], 'original': [3330], 'database.': [3331], 'Peak': [3332], 'list': [3333], '(MGF)': [3335], 'files': [3336, 3346], 'searches': [3340, 3465], 'generated': [3342], 'Xcalibur': [3344], 'raw': [3345], 'program': [3349, 3893], 'MassMatrix': [3352], 'conversion': [3353], 'tools': [3354], '(v.': [3355], '1.4,': [3356], 'http://www.massmatrix.net).': [3357], 'searched': [3365], 'digestion': [3368], 'both': [3370, 3846], 'ends': [3371], 'missed': [3374], 'cleavages': [3375], 'allowed,': [3376], 'fixed': [3377], 'modifications': [3378, 3384], 'carbamidomethylation': [3380], 'Cys,': [3382], 'variable': [3383], 'oxidation': [3386], 'Met': [3388], '4plex': [3391, 3410], 'Tyr;': [3393], 'tolerance': [3395, 3403], 'ppm,': [3400], '0.8': [3407], 'chosen': [3412], 'simultaneously.': [3418], 'results': [3421], 'passed': [3423], 'through': [3424], 'additional': [3425], 'filters,': [3426], 'confidence': [3428, 3625, 3649, 3677], '95%': [3431, 3624, 3911], '(p': [3432], '<': [3433, 4075, 4263], '0.05),': [3434], 'before': [3435], 'exporting': [3436], 'data.': [3438], 'For': [3439, 3468, 3584, 3644], 'quantitation,': [3441], 'only': [3442, 3914], 'unique': [3443, 3934, 4169], 'proteins.': [3449, 4162], 'These': [3450], 'filters': [3451], 'resulted': [3452], 'false': [3455], 'discovery': [3456], '1%': [3461], 'repeats,': [3470], 'spectra': [3471, 3485], 'file': [3481], 'searched.': [3483], 'single': [3487, 3777], 'peptide-based': [3488], 'identifications': [3489], 'deposited': [3491], 'public': [3494], 'Tranche': [3497], '(ProteomeCommons.org)': [3498], 'entry': [3501], 'name': [3502], 'TfZmsyU6n.': [3503], 'quantified': [3507, 3568, 4293], 'least': [3510, 3573, 4032, 4037, 4202], 'considered': [3516, 3922], 'change': [3522], '(32Cox': [3533], 'MaxQuant': [3537], 'enables': [3538], 'identification': [3541, 4136], 'rates,': [3542], 'individualized': [3543], 'p.p.b.-range': [3544], 'accuracies': [3546], 'proteome-wide': [3548], 'quantification.Nat.': [3550], '1367-1372Crossref': [3554], '(9214)': [3557], 'brief,': [3561], 'log2': [3563, 3599, 3605], 'ratios': [3564, 3610, 3693], '7026': [3567, 3658], 'overlapping': [3570], 'calculated': [3578, 3595, 3622, 3680, 4266], 'analyzed': [3580, 4108], 'normal': [3582, 4247], 'distribution.': [3583, 3643], 'given': [3586], 'repeat,': [3591], 'ratio': [3593, 3655, 3668, 3682, 3689, 4269], 'reverse': [3598], 'median': [3602], 'value': [3606, 4059], 'all': [3608, 4214], 'averaged': [3612], 'across': [3613], 'replicates.': [3616, 3882], 'Next,': [3617], 'mean': [3618, 3654], 'S.D.': [3620], '(Z': [3626], 'score': [3627], '=': [3628, 3705], '1.96)': [3629], 'select': [3633], 'those': [3634], 'whose': [3636], 'distribution': [3637, 4248], 'far': [3639], 'main': [3642], 'down-regulated': [3646], 'interval': [3650, 3678], '–0.263053843': [3652], '(0.052103724,': [3653], 'proteins)': [3659], '–1.96': [3660], '0.160794677': [3662], '(S.D.),': [3663], '0.83.': [3670], '(mean': [3681], '+1.96×': [3683], 'S.D.),': [3684], '1.29.': [3691], 'outside': [3694], 'range': [3696], 'defined': [3698, 4023, 4052, 4296], 'being': [3700], 'significantly': [3701, 4258], 'p': [3704, 4058, 4262], '0.05.': [3706], 'RNeasy': [3720], 'Mini': [3722], '(Qiagen).': [3724], 'Equal': [3725], 'amounts': [3726], 'three': [3731, 3881, 4183, 4215, 4233], 'sequencing.': [3737], 'cDNA': [3738, 3759, 3771, 3825, 3853], 'libraries': [3739, 3760, 3772], 'prepared': [3743], 'total': [3748, 4289], 'protocols': [3751, 3794], 'provided': [3752], 'instrument': [3755], 'manufacturer': [3756], '(Illumina).': [3757], 'enriched': [3762], '15': [3764], 'cycles': [3765], 'PCR': [3767], 'amplification.': [3768], 'sequenced': [3774], 'lane': [3778], 'per': [3779, 3980, 3985], 'sample': [3780, 3872], 'Illumina': [3783], 'Genome': [3784], 'Analyzer': [3785], 'II.': [3786], 'RNAseq': [3788], 'collection': [3791], 'published': [3793], '(33Mortazavi': [3795, 3951, 3994], 'Williams': [3797, 3953, 3996], 'B.A.': [3798, 3954, 3997], 'McCue': [3799, 3955, 3998], 'Schaeffer': [3801, 3957, 4000], 'Wold': [3803, 3959, 4002], 'Mapping': [3805, 3961, 4004], 'quantifying': [3807, 3963, 4006], 'transcriptomes': [3809, 3965, 4008], 'RNA-Seq.Nat.': [3811, 3967, 4010], '5:': [3814, 3970, 4013], '621-628Crossref': [3815, 3971, 4014], '(9884)': [3818, 3974, 4017], 'length': [3822, 3850], 'library': [3826], 'ranged': [3827, 3854], 'bp': [3832, 3838, 3844], '5′-adapter': [3835], '58': [3837], '3′-adapter': [3841], '63': [3843], 'ends.': [3847], 'fragment': [3849], '129': [3856], '179': [3858], 'bp.': [3859], 'Adapters': [3860], 'trimmed': [3862], 'reads': [3864, 3869, 3937, 4034], '∼20.0': [3866], 'M': [3867], '80-mers': [3868], 'untreated': [3876, 4072], 'Reads': [3883], 'aligned': [3885], 'TAIR10': [3888], 'BLAT': [3892], '(34Kent': [3894], 'W.J.': [3895], 'BLAT–the': [3896], 'BLAST-like': [3897], 'alignment': [3898], 'tool.Genome': [3899], '12:': [3902], '656-664Crossref': [3903], '(6179)': [3906], 'minimum': [3910], 'identity,': [3912], 'highest': [3916, 4310], 'identity': [3917], 'read': [3920], 'mapping.': [3924], 'Multireads': [3925], 'distributed': [3927], 'proportion': [3929], 'number': [3932], 'splice': [3936], 'similar': [3940], 'loci': [3941], 'Enhanced': [3943], 'Read': [3944], 'Gene': [3947], 'Expression': [3948], '(ERANGE)': [3949], 'strategy': [3950], 'RPKM': [3977, 4065], 'values': [3978, 4066, 4244, 4254], '(reads': [3979], '1Kbps': [3981], 'exon': [3983], 'model': [3984], 'million': [3986], 'mapped': [3987], 'reads)': [3988], 'computed': [3990], 'present': [4025], 'five': [4033], 'within': [4040], 'type': [4043], 'untreated).': [4048], 'if': [4056], 'comparison': [4062], '0.05': [4076, 4264], "Student's": [4079], 't': [4080], 'test.': [4081], 'quantitatively': [4092], 'technology.': [4097], 'extracted,': [4100], 'solution,': [4103], 'iTRAQ-labeled': [4105], 'spectroscopy': [4116], 'higher-energy': [4122], 'collisional': [4123], '(HCD)': [4125], 'capabilities.': [4129], 'This': [4130], 'combination': [4131], 'accurate': [4135], 'precise': [4141], 'label': [4146], 'wide': [4149], 'strategy,': [4165], '57,153': [4168], '1,534,861': [4172], 'spectra,': [4173], '17,007': [4176], '(10,794': [4178], 'proteins/protein': [4179], 'groups)': [4180], '(Fig.': [4185, 4217, 4249, 4303], '1A,': [4186], 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