Microbial diversity in the sediment of a crab pond in Nanjing, China

Name: Work Video:
Duration: 3 min 30 s
Yuchun Liu; Zhigang Zhou; Suxu He; Bin Yao; Einar Ringø
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'UseShareable': [500], 'LinkUse': [501], 'link': [503], 'article': [512], 'with': [513, 560, 854, 980, 1036, 1090, 1141, 1229, 1388, 1421, 1480, 1529, 1542, 1593, 1937, 1985, 2321, 2621, 2950, 3071, 3151], 'your': [514], 'friends': [515], 'colleagues.': [517], 'Learn': [518], 'more.Copy': [519], 'URL': [520], 'Share': [521], 'linkShare': [523], 'onFacebookTwitterLinked': [524], 'InRedditWechat': [525], 'mitten': [527, 595, 833, 1830, 1867, 2787, 3217], '(Eriocheir': [529, 2789, 3219], 'sinensis)': [530, 3220], 'is': [531, 537, 546, 611, 639, 760, 791, 2282, 2318, 2386, 2392], 'great': [533], 'commercial': [534, 873], 'significance': [535], 'bred': [538], 'extensively': [539], 'Eastern': [541], 'Northern': [543], 'complex': [548, 2355, 2899], 'ecosystem': [549], 'where': [550], 'microorganisms': [551, 696], 'water,': [554, 2396], 'gastrointestinal': [557, 3259], 'tracts': [558], 'interact': [559], 'each': [561, 1262, 1300], 'other': [562, 1422, 1986], 'affect': [564], 'health': [566], 'aquatic': [568, 724, 2718], 'animals': [569], '(Cheng,': [570], 'Xie,': [572], 'Ge,': [573], 'Zhu': [574, 2512], '&': [575, 603, 634, 681, 710, 717, 731, 737, 742, 779, 787, 804, 1919, 1959, 2023, 2142, 2179, 2242, 2265, 2344, 2368, 2372, 2455, 2514, 2548, 2584, 2614, 2646, 2682, 2708, 2736, 2775, 2817, 2863, 2893, 2937, 2970, 3010, 3061, 3104, 3138, 3167, 3204, 3247], '2010).': [577], 'The': [578, 823, 846, 868, 898, 912, 964, 1042, 1063, 1082, 1106, 1161, 1240, 1276, 1337, 1436, 1471, 1495, 1648, 1784, 1931, 1973, 1993, 2316], 'microbial': [579, 616, 770, 817, 1859, 1901, 2653, 2900], 'communities': [580, 2286], 'water': [584, 916, 940, 1031, 1814], '(Cheng': [585, 1815], 'et': [586, 1173, 1181, 1816, 1833, 2168, 2234, 2307, 2313], 'al.': [587, 1174, 1182, 1817, 1834, 2169, 2235, 2308, 2314], '2010)': [588], 'gut': [592, 1827, 1864, 2830], '(Li,': [597], 'Guan,': [598], 'Wei,': [599], 'Xu,': [601], 'Zhao': [602, 2773], 'Zhang': [604, 2776, 3200], '2006)': [605], 'been': [607, 687, 727, 902, 1806, 2249, 2279], 'studied.': [608], 'However,': [609, 2268], 'there': [610], 'no': [612], 'report': [613], 'on': [614, 927, 1050, 1115, 1136, 1211, 2376, 2401, 2828], 'community': [617, 818, 1860, 2519, 2873, 3143], 'sediment.': [621], 'Generally': [622], 'may': [625, 1856], 'require': [626], '12–16': [627], 'moults': [628], 'reach': [630], 'maturity': [631, 3213], '(Zhang,': [632], 'Li': [633, 2734, 2763, 3202], 'Cui': [635, 3205], '2001).': [636, 2144], 'Crab': [637], 'shell': [638], 'rich': [640], 'chitin,': [642], 'represents': [647], 'one': [648, 672, 2327], 'most': [651], 'chitin-rich': [652], 'environments.': [653, 2413], 'Organisms': [654], 'produce': [655, 2490], 'chitinase': [656, 1189, 1403, 1442, 1591, 1881, 1981, 2147, 2271, 2409, 2553, 2667, 2947, 3070, 3146], 'different': [658, 1196, 2288], 'physiological': [659], 'purposes.': [660], 'Bacterial': [661, 2459, 3142], 'chitinases': [662, 678, 721, 1222, 1596, 1898, 1988, 2016], 'play': [663], 'roles': [664], 'nutrition': [666], 'parasitism,': [668], 'thus': [670], 'form': [671, 2160], 'major': [675], 'sources': [676], '(Dahiya,': [679], 'Tewari': [680, 2582], 'Hoondal': [682, 2585], '2006).': [683, 1835], 'Chitinase': [684, 2245, 2443, 2712, 3108], 'genes': [685, 2410, 2554, 2912, 3109], 'identified': [688, 1346, 1877, 2149], 'large': [691, 2748], 'pool': [692], 'uncultured': [694, 2558], 'chitinolytic': [695, 2226, 2591, 2872], 'marine': [698, 2349, 2559, 2692, 3174], 'soil': [700, 2229, 2274, 2480], 'environments': [701, 801], 'used': [703, 808, 903], 'as': [704, 975, 1130, 1169, 1237, 1280, 1604, 1837, 1904], 'molecular': [705], 'markers': [706], '(Cottrell,': [707], 'Wood,': [708], 'Yu': [709, 2546, 3163], 'Kirchman': [711, 2549], '2000;': [712], 'Metcalfe,': [713], 'Krsek,': [714], 'Gooday,': [715], 'Prosser': [716, 2861], 'Wellington': [718, 2864], '2002).': [719], 'Recently,': [720], 'various': [723, 1900], 'habitats': [725, 2719], 'investigated': [728], '(LeCleir,': [729], 'Buchan': [730, 2706], 'Hollibaugh': [732, 2709], '2004;': [733, 2170], 'Hobel,': [734], 'Marteinsson,': [735], 'Hreggvidsson': [736, 2644], 'Kristjánsson': [738, 2647], '2005;': [739], 'Bhattacharya,': [740], 'Nagpure': [741, 2453], 'Gupta': [743, 2456], '2007).': [744], 'Denaturing': [745], 'gradient': [746, 2526, 2841, 2904], 'gel': [747, 1118, 1462, 2527, 2842, 2905], 'electrophoresis': [748, 2906], '(DGGE)': [749], 'analysis': [750, 1166, 1659, 1946, 2029, 2520, 2662, 2780, 2868, 2907, 3017], 'bacterial': [752, 797, 1490, 1987, 2871], '16S': [753, 1137, 1491, 1661, 2664], 'rRNA': [754, 1492, 2665], 'gene': [755, 1190, 1404, 1443, 1493, 1882, 2246, 2713, 3147], 'fragments': [756, 1191, 1405, 1444, 1592, 1883, 1982, 2247], 'generated': [757], 'PCR': [759, 811, 1162, 1226, 1242, 1277, 1343, 1350, 1386, 1476], 'reliable,': [762], 'rapid': [763], 'an': [765, 1116, 2224, 2875], 'easy': [766], 'method': [767, 1178], 'evaluate': [769], '(Liu,': [772], 'Shi,': [775, 784], 'Benjamisen': [777, 2814], 'Hølvold': [778, 2815], '2008;': [781], '2009)': [789], 'capable': [792], 'detect': [794], 'dominant': [796, 1564, 1790, 1810, 1841, 2330, 2393], 'species': [798, 2331, 2986], '(Muyzer,': [802], 'Waal': [803, 2891], 'Uitterlinden': [805, 2894], '1993).': [806], 'We': [807], 'PCR-DGGE': [809, 1558], 'screening': [812, 2486], 'technologies': [813], 'investigate': [815, 2407], 'sediments.': [822], 'sample': [825], 'was': [826, 851, 864, 922, 941, 953, 958, 973, 987, 1044, 1065, 1077, 1085, 1139, 1208, 1227, 1429, 1965, 2417], 'collected': [827], 'from': [828, 1195, 1459, 1498, 1679, 1940, 2199, 2253, 2256, 2716], 'rearing': [831], 'near': [835], 'city': [837], 'Jiangsu': [840, 887, 895], 'province,': [841], 'China,': [842], 'July': [844], '2008.': [845], 'depth': [847], '1.5': [852, 1009], 'm,': [853], 'temperature': [855], '30°C,': [857], 'pH': [858, 913, 1021], '7.5': [859], 'culture': [862, 907], 'area': [863], 'approximately': [865], '100': [866, 1006, 1701, 1709, 1758, 1871], 'acres.': [867], 'crabs': [869], 'were': [870, 1113, 1167, 1279, 1345, 1358, 1381, 1406, 1445, 1463, 1504, 1519, 1527, 1797, 1876, 1983], 'fed': [871], 'diet': [874], '(Crude': [875], 'protein': [876, 2751], '36%': [877], 'crude': [879], 'lipid': [880], '6%': [881], 'without': [882], 'dietary': [883], 'antibiotics)': [884], 'manufactured': [885], 'Danyang': [888], 'Lekaihuai': [889], 'Co.,': [891], 'Ltd': [892], '(Zhenjiang': [893], 'City,': [894], 'Province,': [896], 'China).': [897], 'earth': [899], 'has': [901, 1185, 1805, 2220], 'about': [909], '3': [910, 1776], 'years.': [911], '50': [917, 991], 'cm': [918], 'surface': [921, 948], 'measured': [923], 'at': [924, 1054, 1061, 1154, 1284, 1332, 1469], '11:00': [925], 'hours': [926], 'sampling': [929], 'day.': [930], 'Due': [931], 'that': [932, 1184, 1530, 1562, 1788, 1851, 1963, 1969, 2207, 2284, 2324, 2384, 2489], 'dissolved': [933], 'oxygen': [934], 'level': [935], 'above': [942], '5.0': [943], 'mg': [944], 'L−1': [945], 'sampled,': [954], 'sampled': [957], 'not': [959], 'regarded': [960], 'be': [962, 1809, 1879], 'anoxic.': [963], 'total': [965], 'genomic': [966, 1083, 1126, 1232], 'DNA': [967, 1080, 1084, 1100, 1112, 1127, 1233, 2482], 'extracted': [974], 'described': [976, 1170], 'Brady': [978, 2475], '(2007)': [979, 2458, 2477], 'some': [981, 2293], 'modifications.': [982], '10': [983, 1055, 1059, 1735], 'g': [984, 1057], 'suspended': [988], 'mL': [992, 997, 1074], 'centrifuge': [993, 1070], 'tube': [994, 1043], 'containing': [995], '20': [996, 1073], 'pre-heated': [999], '(70°C)': [1000], 'lysis': [1001], 'buffer': [1002, 1270], '[100': [1003], 'mM': [1004, 1007, 1256, 1260, 1266], 'Tris-HCl,': [1005], 'EDTA,': [1008], 'M': [1010], 'NaCl,': [1011], '1%': [1012], '(w/v)': [1013, 1019], 'cetyl': [1014], 'trimethyl': [1015], 'ammonium': [1016], 'bromide,': [1017], '2%': [1018], 'SDS,': [1020], '8.0],': [1022], 'inverted': [1023], 'mix,': [1025], 'incubated': [1027], '70°C': [1030], 'bath': [1032], 'h': [1035], 'gentle': [1037], 'inversion': [1038], 'every': [1039], '30': [1040, 1293, 1303, 1308, 1312, 1317, 1321, 1326, 2091], 'min.': [1041, 1336], 'thereafter': [1045], 'cooled': [1046], 'down': [1047], '4°C': [1049], 'ice,': [1051], 'centrifuged': [1053], '000': [1056], 'min': [1060, 1283], '4°C.': [1062], 'supernatant': [1064], 'transferred': [1066], 'into': [1067, 1361, 1369, 1412, 2955], '50-mL': [1069], 'tube,': [1071], 'isopropanol': [1076], 'added': [1078], 'precipitation.': [1081], 'subjected': [1086, 1384], 'sequential': [1088], 'digestion': [1089], 'RNase': [1091], 'proteinase': [1093], 'K,': [1094], 'purified': [1096, 1111, 1125, 1231], 'using': [1097, 1119, 1374, 1915, 1947, 1989, 2660, 2839], 'Cycle-Pure': [1099], 'kit': [1101], '(Omega,': [1102], 'Norcross,': [1103], 'GA,': [1104], 'USA).': [1105], 'presence': [1107, 1338], 'size': [1109, 1340, 1355, 2046], 'visualized': [1114], 'agarose': [1117, 1348], 'ethidium': [1120], 'bromide': [1121], 'staining.': [1122], 'Using': [1123, 1176], 'template,': [1132], 'variable': [1134], 'V3-region': [1135], 'rDNA': [1138, 1662], 'amplified': [1140, 1187], 'pair': [1143], 'universal': [1145], 'primers': [1146, 1389, 1481], 'BA338f': [1147, 1482], '(5′-ACTCCTACGGGAGGCAGCAG-3′)': [1148], 'including': [1149, 1998], '40-base': [1151], 'GC': [1152], 'clamp': [1153], '5′': [1156], 'end': [1157], 'UN518r': [1159, 1484], '(5′-ATTACCGCGGCTGCTGG-3′).': [1160], 'reaction': [1163, 1243], 'DGGE': [1165, 1461, 1496, 1517, 1560, 1664, 1785], 'performed': [1168, 1228], '(2008).': [1175], 'LeCleir': [1180, 2704], '(2004)': [1183, 2711, 3013, 3064], 'successfully': [1186], 'family': [1193, 1220, 1598, 2014, 2127, 3030, 3068], '18': [1194, 1221, 2015, 2128, 3031, 3069], 'environmental': [1197, 2481], 'samples,': [1198], 'degenerate': [1200], 'primer': [1201, 1263], 'set': [1202], '(GHI-F:': [1203], '5′-GCGACGGIATGGAYYTIGAI-3′': [1204], 'GHI-R:': [1206], '5′-GGACGCCIGTCCAICC-3′)': [1207], 'designed': [1209, 3073], 'based': [1210], 'two': [1213, 1554], 'conserved': [1214, 1642, 2008, 2131, 2155, 3022], 'motifs,': [1215], 'DGMDLD': [1216], 'GWTGV': [1218], '(http://www.cazy.org/GH18.html).': [1223], 'A': [1224, 2948, 3180], 'touchdown': [1225], 'template.': [1239], '50-μL': [1241], 'system': [1244], 'contained': [1245], '~50-': [1246], '100-ng': [1248], 'template': [1249], 'DNA,': [1250], '2.5': [1251], 'U': [1252], 'Taq': [1253], 'polymerase,': [1254], '0.2': [1255], 'deoxynucleoside': [1257], 'triphosphate,': [1258], '1': [1259, 1768, 2080, 2119], 'Mg2+': [1267], 'supplied': [1271], 'New': [1273, 2437], 'England': [1274], 'Biolabs.': [1275], 'conditions': [1278], 'follows:': [1281], '5': [1282, 1335, 1743], '94°C,': [1285], 'followed': [1286, 1310], 'five': [1288], 'cycles': [1289, 1313], '94°C': [1291, 1315], 's,': [1294, 1309, 1318, 1327], '60°C': [1295], '(decreasing': [1296], '1°C': [1298], 'after': [1299, 1478], 'cycle)': [1301], 's': [1304, 1322], '72°C': [1306, 1324, 1333], '58°C': [1319], 'final': [1330], 'extension': [1331], 'products': [1344, 1351, 1477], 'gels.': [1349], 'appropriate': [1354], '(~450': [1356], 'bp)': [1357], 'retrieved,': [1359], 'cloned': [1360, 2250], 'vector': [1363], 'pGEM-T': [1364], 'Easy': [1365], '(Promega),': [1366], 'transformed': [1368], 'Escherichia': [1370], 'coli': [1371], 'DH5': [1372], '(TaKaRa)': [1373], 'electroporation.': [1375], 'One': [1376], 'hundred': [1377], 'transformants': [1378], '(white': [1379], 'colonies)': [1380], 'randomly': [1382, 1872], 'picked,': [1383], 'amplification': [1387, 1479], 'pGEM-F': [1390], '(5′-CCGACGTCGCATGCTCC-3′)': [1391], 'pGEM-R': [1393], '(5′-CTCCCATATGGTCGACCTG-3′),': [1394], 'sequenced': [1396, 1873, 2252], 'Sunbiotech': [1398], '(China).': [1399], 'Nucleotide': [1400], 'sequences': [1401, 1415, 1424, 1439, 1457, 1526, 1601, 1892, 1914, 1923, 1935, 1976, 2049, 2148, 2185, 2198, 2272, 2714], 'corrected': [1407], 'hand': [1409], 'translated': [1411], 'amino': [1413, 1888, 1974], 'acid': [1414, 1584, 1889, 1975], 'emboss': [1417], 'Transeq': [1418], '(http://www.ebi.ac.uk/emboss/transeq).': [1419], 'Alignment': [1420], 'known': [1423, 1897, 2197], 'GenBank': [1427, 1449, 2038], 'database': [1428, 1450, 1468, 1534], 'carried': [1430], 'out': [1431, 1968], 'ncbi': [1433], 'blast': [1434, 1680], 'tool.': [1435], 'representative': [1437, 1589, 1980], 'nucleotide': [1438, 1456, 2753], 'deposited': [1446, 1464], 'under': [1451], 'accession': [1452, 1608], 'numbers': [1453], 'GQ202084–GQ202091.': [1454], 'All': [1455, 1600, 2145], 'retrieved': [1458, 2715], 'same': [1467], 'HM756290–HM756301.': [1470], 'samples': [1473, 1503], 'gave': [1474], 'clear': [1475], 'specific': [1485], 'V3': [1487, 1663], 'region': [1488, 2001], 'sequences.': [1494, 1972, 2754], 'fingerprints': [1497], 'three': [1499], 'replicates': [1500], 'similar': [1505, 2005], '(Fig.': [1506], '1).': [1507], 'To': [1508], 'determine': [1509], 'taxon': [1511], 'predominant': [1513, 1824, 1967, 2209], 'microbes,': [1514], 'distinct': [1516], 'bands': [1518, 1665], 'excised': [1520], 'characterized': [1522], 'sequencing.': [1524], 'These': [1525], 'compared': [1528, 1984], 'NCBI': [1533], '(Table': [1535, 1846, 1929, 2204], '1),': [1536, 1847], 'showed': [1538, 1893, 1924, 1962, 2191], 'high': [1539], 'identities': [1540, 1895], '(93–100%)': [1541], 'α-,': [1543], 'β-,': [1544], 'γ-': [1545], 'δ-Proteobacteria': [1547, 1727], '(six': [1548], 'bands),': [1549], 'Bacteroidetes': [1550, 1574, 1742, 1799, 1822, 1840, 2066, 2201, 2270], '(three': [1551], 'bands)': [1552], 'unclassified': [1555, 1576, 1801], 'bacteria.': [1556, 1577, 1802, 2218, 2693], 'Both': [1557], 'suggested': [1561, 2283], 'bacteria': [1565, 1767, 1791, 2394, 2560, 2619, 2783], 'belonged': [1570], 'families': [1572], 'Proteobacteria,': [1573, 1798], 'Figure': [1578], '1Open': [1579], 'figure': [1581], 'viewerPowerPoint': [1582], 'Amino': [1583], 'sequence': [1585, 2011], 'alignment': [1586], 'seven': [1588, 1922, 1979], 'putative': [1590, 1649, 1880, 1994], 'closely': [1594], 'related': [1595], '18.': [1599], 'are': [1602, 1637, 1644, 1652, 1823, 2003, 2215, 2296, 2326], 'indicated': [1603, 1653, 1787, 1807], 'follows': [1605], '(including': [1606], 'number):': [1609], 'GH18-Act,': [1610], 'Xylanimonas': [1611], 'cellulosilytica': [1612], 'DSM': [1613, 1619, 1625, 2062, 2073, 2083], '15894': [1614], '(YP_003324815.1);': [1615], 'GH18-Bac,': [1616], 'Rhodothermus': [1617, 2071], 'marinus': [1618, 2072], '4252': [1620, 2074], '(YP_003290622.1);': [1621], 'GH18-Chl,': [1622], 'Ktedonobacter': [1623], 'racemifer': [1624], '44963': [1626], '(EFH87662.1);': [1627], 'GH18-Pro,': [1629], 'Lysobacter': [1630], 'enzymogenes': [1631], 'strain': [1632, 1715], 'OH11': [1633], '(ABI63600.1).': [1634], 'Identical': [1635], 'residues': [1636, 1643, 1651, 3023], 'shaded': [1638, 1645], 'black,': [1640], 'gray.': [1647], 'catalytic': [1650, 1995, 2135], 'asterisk': [1655], 'Table': [1656, 2026], '1.': [1657], 'Sequence': [1658, 2028, 2041], 'their': [1667, 2034], 'closest': [1668], 'relatives': [1669], 'Phylogenetic': [1670, 2039, 2779], 'group': [1671, 2040], 'Band': [1672], 'no.': [1673, 1675, 2042, 2044, 2448], 'Accession': [1674, 2043], 'Closest': [1676], 'relative': [1677, 2036], '(obtained': [1678], 'search)': [1681], 'Identity': [1682], '(%)': [1683, 2054], 'α-Proteobacteria': [1684], '11': [1685], 'HM756300': [1686], 'Uncultured': [1687, 1696, 1704, 1721, 1730, 1737, 1745, 1753, 1770, 1778], 'bacterium': [1688, 1732, 1771, 3175], 'clone': [1689, 1698, 1706, 1723, 1747, 1755, 1762, 1772, 1780], 'MNO302A4': [1690], '(GU996484)': [1691], '93': [1692], 'β-Proteobacteria': [1693, 1907, 2087], '6': [1694, 2059], 'HM756295': [1695], 'Burkholderiales': [1697], 'A6-48': [1699], '(AM940566)': [1700], '9': [1702], 'HM756298': [1703], 'β-Proteobacterium': [1705], 'MS026A1_C01': [1707], '(EF701004)': [1708], 'γ-Proteobacteria': [1710, 2106], '4': [1711, 2100], 'HM756293': [1712], 'Shigella': [1713], 'flexneri': [1714], 'FB5': [1716], '(HQ701686)': [1717], '99': [1718, 1726, 1734, 1765], '7': [1719], 'HM756296': [1720], 'γ-Proteobacterium': [1722], 'OuchyA-10': [1724], '(FN679150)': [1725], 'HM756291': [1729], 'Desulfobacteraceae': [1731], '(FN679112)': [1733], 'HM756299': [1736], 'δ-Proteobacterium': [1738], 'TH_c24': [1739], '(GU998929)': [1740], '98': [1741, 1750, 1783], 'HM756294': [1744], 'Flexibacteraceae': [1746, 1754], 'HS-S-213': [1748], '(HM592614)': [1749], '8': [1751], 'HM756297': [1752], 'HS-S-164': [1756], '(HM592609)': [1757], 'HM756301': [1760], 'Flavobacteriaceae': [1761], 'CL101': [1763], '(HQ686271)': [1764], 'Unclassified': [1766], 'HM756290': [1769], '3H-233': [1773], '(EU786128)': [1774], '97': [1775], 'HM756292': [1777], 'Chloroflexi': [1779], 'CH-33': [1781], '(AB293398)': [1782], 'results': [1786, 2403], 'Proteobacteria': [1803, 1820, 1838, 2203, 2304, 2325, 2391], 'also': [1804], '2010),': [1818], '(Li': [1832, 1918], 'Therefore,': [1836], 'result': [1849, 2317], 'implied': [1850], 'microbes': [1853, 2210], 'impact': [1857], 'structure': [1861, 2166], 'crab.': [1868], 'Of': [1869], 'clones,': [1874], '79': [1875], 'BlastX': [1885], 'searches.': [1886], 'At': [1887], 'level,': [1890], 'these': [1891, 1934, 1978, 2412], '42–86%': [1894], 'sources,': [1902], 'such': [1903], 'Actinobacteridae,': [1905, 2200], 'Bacteroidetes,': [1906], 'γ-Proteobacteria.': [1909], 'After': [1910], 'removing': [1911], 'redundant': [1913], 'cd-hit': [1916], 'program': [1917, 2743, 2978], 'Godzik': [1920, 2737], '2006),': [1921], 'divergence': [1925], '(sharing': [1926], '<95%': [1927], 'identity)': [1928], '2).': [1930], 'length': [1932], 'varied': [1936], 'range': [1939], '138': [1941, 2058], '151': [1943, 2118], 'residues.': [1944], 'Abundance': [1945], 'distance-based': [1948], 'operational': [1949, 2981], 'taxonomic': [1950, 2982], 'unit': [1951], '(out)': [1952], 'richness': [1954], 'determination': [1955], '(dotur)': [1956], 'software': [1957], '(Schloss': [1958], 'Handelsman': [1960, 2971], '2005)': [1961], 'TDChi2': [1964, 2067], 'represented': [1970], '35': [1971, 2070], 'ClustalW': [1991], 'program.': [1992], 'site': [1996, 2010, 3027], 'residues,': [1997], 'well-conserved': [2000], '(DIDWE),': [2002], 'very': [2004], 'active': [2009, 2492, 3026], '(DXDXE)': [2012], '(Synstad,': [2017], 'Gåseidnes,': [2018], 'van': [2019, 3003], 'Aalten,': [2020], 'Vriend,': [2021], 'Nielsen': [2022, 3008], 'Eijsink': [2024, 2178, 3011, 3059], '2004).': [2025, 2181], '2.': [2027], 'clones': [2032, 2488], 'close': [2035], 'Protein': [2045], '(AA)': [2047], 'source': [2051], 'Relative': [2052], 'identity': [2053], 'Actinobacteridae': [2055], 'TDChi3': [2056], 'GQ202086': [2057], 'Streptosporangium': [2060], 'roseum': [2061], '43021': [2063], '(ACZ89829)': [2064], '86': [2065], 'GQ202085': [2068], '144': [2069, 2079], '(AAU11838)': [2075], '55': [2076], 'TDChi4': [2077], 'GQ202087': [2078], 'Salinibacter': [2081], 'ruber': [2082], '13855': [2084], '(ABC44395)': [2085], '49': [2086], 'TDChi1': [2088], 'GQ202084': [2089], '140': [2090], 'Chromobacterium': [2092], 'sp.': [2093, 2112], 'C-61': [2094], '(AAP88583)': [2095], '47': [2096], 'TDChi6': [2097], 'GQ202089': [2098], '143': [2099, 2109], 'Burkholderia': [2101], 'ambifaria': [2102], 'MEX-5': [2103], '(EDT39668)': [2104], '42': [2105], 'TDChi5': [2107], 'GQ202088': [2108], 'Stenotrophomonas': [2111, 2120], 'SKA14': [2113], '(EED40275)': [2114], '52': [2115], 'TDChi7': [2116], 'GQ202090': [2117], 'maltophilia': [2121], '(AAB70917)': [2122], '48': [2123], 'Glycosyl': [2124], 'hydrolases': [2125], 'residue': [2132], 'essential': [2133], 'activity': [2136], '(Papanikolau,': [2137], 'Prag,': [2138], 'Tavlas,': [2139], 'Vorgias,': [2140], 'Oppenheim': [2141, 2935], 'Petratos': [2143, 2938], 'study': [2152, 2190], 'contain': [2153], 'motif': [2156], 'DXDXE,': [2157], 'which': [2158], 'can': [2159], '(βα)8': [2162], 'barrel': [2163], '(TIM': [2164], 'barrel)': [2165], '(Synstad': [2167], 'Vaaje-Kolstad,': [2171], 'Vasella,': [2172], 'Peter,': [2173], 'Netter,': [2174], 'Houston,': [2175], 'Westereng,': [2176], 'Synstad,': [2177], 'Aalten': [2180, 3004, 3062], 'In': [2182], 'addition,': [2183], 'obtained': [2186], 'present': [2189], '42%': [2192], '86%': [2194], 'similarities': [2195], '2),': [2205], 'suggesting': [2206], 'mainly': [2216], 'chitinase-producing': [2217], 'It': [2219, 2281], 'reported': [2221], 'Actinobacteria': [2222, 2255, 2311], 'important': [2225], 'function': [2227], 'vermicompost': [2231, 2276, 3150], 'ecosystems': [2232, 2277], '(Metcalfe': [2233], '2002;': [2236], 'Yasir,': [2237], 'Aslam,': [2238], 'Kim,': [2239], 'Lee,': [2240], 'Jeon': [2241, 3136], 'Chung': [2243, 3139], '2009).': [2244], 'cultivated': [2254], 'lake': [2257, 3111], 'sediments': [2258, 3112], '(Xiao,': [2259], 'Yin,': [2260], 'Lin,': [2261], 'Sun,': [2262], 'You,': [2263], 'Wang': [2264, 2266, 3102, 3105], '2005).': [2267, 2315], 'few': [2269], 'reported.': [2280], 'chitinoclastic': [2285], 'environment': [2289], 'specificity': [2291], 'extent.': [2294], 'Chitinases': [2295], 'widely': [2297], 'distributed': [2298], 'among': [2299], 'members': [2301], 'diverse': [2303, 2717], 'lineages': [2305], '(Cottrell': [2306], '2000)': [2309], '(Xiao': [2312], 'agreement': [2320], 'earlier': [2322], 'studies': [2323], 'attached': [2332], 'chitinous': [2335, 2364], 'outer': [2336], 'layer': [2337], 'setae': [2339], '(Goffredi,': [2340], 'Jones,': [2341], 'Erhlich,': [2342], 'Springer': [2343, 2612], 'Vrijenhoek': [2345, 2615], '2008).': [2346], 'Furthermore,': [2347], 'many': [2348], 'bacteria,': [2350], 'particularly': [2351], 'chitin-degrading': [2352], 'Vibrios': [2353], 'possess': [2354], 'signal': [2356], 'transduction': [2357], 'systems': [2358], 'finding': [2360], 'adhering': [2362], 'substrates': [2365, 2951], '(Yu,': [2366], 'Bassler': [2367, 3165], 'Roseman': [2369, 2373, 2683, 3168], '1993;': [2370], 'Keyhani': [2371, 2680], '1999).': [2374], 'Based': [2375, 2400], 'information': [2378], 'we': [2379, 2404], 'put': [2380], 'forward': [2381], 'hypothesis': [2383], 'main': [2388], 'reason': [2389], 'why': [2390], 'gut.': [2399], 'suggest': [2405], 'novel': [2408], 'Acknowledgment': [2414], 'This': [2415], 'research': [2416], 'supported': [2418], 'Special': [2421], 'funds': [2422], 'Technology': [2424, 3155], 'Development': [2425, 2435], 'Institutes': [2430], '(Project': [2431], 'Title:': [2432], 'Safe': [2439], 'Agent': [2441], 'Used': [2444], 'Aquaculture,': [2446], 'project': [2447], '2011EG134221)': [2449], 'References': [2450], 'Bhattacharya': [2451], 'D.,': [2452], 'A.': [2454, 2613, 2707, 2738], 'R.K.': [2457], 'chitinases:': [2460], 'properties': [2461], 'potential.': [2463], 'Critical': [2464], 'Reviews': [2465], '27,': [2468], '21–': [2469], '28.': [2470], 'CrossrefCASPubMedWeb': [2471, 2500, 2576, 2602, 2676, 2700, 2730, 2759, 2885, 2964, 2995, 3088, 3124], 'Science®Google': [2473, 2502, 2540, 2578, 2604, 2638, 2678, 2702, 2732, 2761, 2802, 2853, 2887, 2925, 2966, 2997, 3043, 3090, 3126, 3161, 3198, 3235, 3276], 'Scholar': [2474, 2503, 2541, 2579, 2605, 2639, 2679, 2703, 2733, 2762, 2803, 2854, 2888, 2926, 2967, 2998, 3044, 3091, 3127, 3162, 3199, 3236, 3277], 'S.F.': [2476], 'Construction': [2478], 'cosmid': [2483], 'libraries': [2484], 'biologically': [2491], 'small': [2493], 'molecules.': [2494], 'Nature': [2495], 'Protocols': [2496], '2,': [2497], '1297–': [2498], '1305.': [2499], 'Cheng': [2504], 'Y.,': [2505, 2805, 2928, 3240], 'Q.,': [2507], 'Xie': [2508], 'J.,': [2509, 2772, 3097], 'Ge': [2510], 'X.,': [2511, 3093], 'W.': [2513, 2735], 'B.': [2516, 3246], '(2010)': [2517], 'ponds': [2523], 'denaturing': [2525, 2840, 2903], 'electrophoresis.': [2528, 2843], 'World': [2529], 'Journal': [2530, 2791, 3034, 3081, 3189, 3226], 'Microbiology': [2532, 2572, 2596, 2630, 2672, 2726, 2794, 2881, 2919, 2991, 3120], '26,': [2535], '825–': [2536], '831.': [2537], 'CrossrefCASWeb': [2538, 3159, 3274], 'Cottrell': [2542], 'M.T.,': [2543], 'Wood': [2544], 'D.N.,': [2545], 'L.Y.': [2547], 'D.L.': [2550], '(2000)': [2551], 'Selected': [2552], 'cultured': [2556, 3267], 'α-': [2563], 'β-subclasses': [2565], 'Proteobacteria.': [2568], 'Applied': [2569, 2595, 2669, 2723, 2793, 2878, 2916, 2988, 3117], 'Environmental': [2571, 2629, 2671, 2725, 2880, 2918, 2990, 3119], '66,': [2573], '1195–': [2574], '1201.': [2575], 'Dahiya': [2580], 'N.,': [2581], 'R.': [2583], 'G.S.': [2586], '(2006)': [2587, 2739, 2778], 'Biotechnological': [2588], 'aspects': [2589, 2687], 'enzymes:': [2592], 'review.': [2594], '71,': [2599, 2673, 2992, 3121], '773–': [2600], '782.': [2601], 'Goffredi': [2606], 'S.K.,': [2607], 'Jones': [2608], 'W.J.,': [2609], 'Erhlich': [2610], 'H.,': [2611], 'R.C.': [2616], '(2008)': [2617, 2820], 'Epibiotic': [2618], 'associated': [2620], 'recently': [2623], 'discovered': [2624], 'Yeti': [2625], 'crab,': [2626], 'Kiwa': [2627], 'hirsute.': [2628], '10,': [2631], '2623–': [2632], '2634.': [2633], 'LibraryCASPubMedWeb': [2636, 2800, 3041], 'Hobel': [2640], 'C.F.V.,': [2641], 'Marteinsson': [2642], 'V.T.,': [2643], 'G.Ó.': [2645], 'J.K.': [2648], '(2005)': [2649, 2973, 3107], 'Investigation': [2650], 'ecology': [2654], 'intertidal': [2656], 'hot': [2657], 'springs': [2658], 'genes.': [2668], '2771–': [2674], '2776.': [2675], 'N.O.': [2681], 'S.': [2684, 3169], '(1999)': [2685], 'Physiological': [2686], 'chitin': [2689, 3186], 'catabolism': [2690], 'Biochem': [2694], 'Biophysica': [2695], 'Acta': [2696], '1473,': [2697], '108–': [2698], '122.': [2699], 'G.R.,': [2705], 'J.T.': [2710], 'reveal': [2720], 'environment-specific': [2721], 'distributions.': [2722], '70,': [2727], '6977–': [2728], '6983.': [2729], 'Cd-hit:': [2740], 'fast': [2742], 'clustering': [2745], 'comparing': [2747], 'sets': [2749], 'or': [2752], 'Bioinformatics': [2755], '22,': [2756], '1658–': [2757], '1659.': [2758], 'K.,': [2764], 'Guan': [2765], 'W.,': [2766], 'Wei': [2767], 'G.,': [2768, 2890, 2930, 2932, 3007, 3046], 'B.,': [2770, 2809, 3000, 3056, 3058], 'Xu': [2771], 'L.': [2774, 2816], 'Y.': [2777, 3206], 'intestinal': [2782], 'sinensis).': [2790], '103,': [2795], '675–': [2796], '682.': [2797], 'Z.,': [2807, 3131, 3238], 'Shi': [2810, 3241], 'P.,': [2811, 3242], 'S.,': [2813, 3002, 3135, 3244], 'E.': [2819, 3249], 'Effect': [2821], 'intraperitoneal': [2823], 'injection': [2824], 'immunostimulatory': [2826], 'substances': [2827], 'allochthonous': [2829], 'microbiota': [2831, 3256], 'Atlantic': [2833], 'salmon': [2834], '(Salmo': [2835], 'salar': [2836], 'L.)': [2837], 'determined': [2838], '39,': [2846], '635–': [2847], '646.': [2848], 'LibraryCASWeb': [2851], 'Metcalfe': [2855], 'A.C.,': [2856], 'Krsek': [2857], 'M.,': [2858, 3129], 'Gooday': [2859], 'G.W.,': [2860], 'J.I.': [2862], 'E.M.H.': [2865], '(2002)': [2866], 'Molecular': [2867, 3251], 'upland': [2876], 'pasture.': [2877], '68,': [2882], '5042–': [2883], '5050.': [2884], 'Muyzer': [2889], 'E.C.': [2892], 'A.G.': [2895], '(1993)': [2896, 3170], 'Profiling': [2897], 'populations': [2901], 'polymerase': [2909], 'chain': [2910], 'reaction-amplified': [2911], 'coding': [2913], 'for16S': [2914], 'rRNA.': [2915], '59,': [2920], '695–': [2921], '700.': [2922], 'CASPubMedWeb': [2923, 3196], 'Papanikolau': [2927], 'Prag': [2929], 'Tavlas': [2931], 'Vorgias': [2933], 'C.E.,': [2934], 'A.B.': [2936], 'K.': [2939], '(2001)': [2940, 3207], 'High': [2941], 'resolution': [2942], 'structural': [2943], 'analyses': [2944], 'mutant': [2946], 'complexes': [2949], 'provide': [2952], 'new': [2953], 'insight': [2954], 'mechanism': [2957, 3182], 'catalysis.': [2959], 'Biochemistry': [2960, 3035], '40,': [2961], '11338–': [2962], '11343.': [2963], 'Schloss': [2968], 'P.D.': [2969], 'J.': [2972], 'Introducing': [2974], 'DOTUR,': [2975], 'computer': [2977], 'defining': [2980], 'units': [2983], 'estimating': [2985], 'richness.': [2987], '1501–': [2993], '1506.': [2994], 'Synstad': [2999, 3057], 'Gåseidnes': [3001], 'D.M.F.,': [3005], 'Vriend': [3006], 'J.E.': [3009], 'V.G.H.': [3012, 3060], 'Mutational': [3014], 'computational': [3016], 'role': [3020], 'chitinase.': [3032], 'European': [3033], '271,': [3036], '253–': [3037], '262.': [3038], 'Vaaje-Kolstad': [3045], 'Vasella': [3047], 'A.,': [3048], 'Peter': [3049], 'M.G.,': [3050], 'Netter': [3051], 'C.,': [3052, 3164], 'Houston': [3053], 'D.R.,': [3054], 'Westereng': [3055], 'D.M.F.': [3063], 'Interactions': [3065], 'inhibitor': [3074], 'Hm508': [3075], 'its': [3077], 'degradation': [3078], 'product,': [3079], 'chitobiono-ơ-lactone.': [3080], 'Biological': [3083, 3191], 'Chemistry': [3084, 3192], '279,': [3085], '3612–': [3086], '3619.': [3087], 'Xiao': [3092], 'Yin': [3094], 'X.B.,': [3095], 'Lin': [3096], 'Sun': [3098], 'L.G.,': [3099], 'You': [3100], 'Z.Y.,': [3101], 'P.': [3103], 'F.P.': [3106], 'Ardley': [3114], 'island,': [3115], 'Antarctica.': [3116], '7904–': [3122], '7909.': [3123], 'Yasir': [3128], 'Aslam': [3130], 'Kim': [3132], 'S.W.,': [3133], 'Lee': [3134], 'C.O.': [3137], 'Y.R.': [3140], '(2009)': [3141, 3250], 'composition': [3144], 'antifungal': [3152], 'activity.': [3153], 'Bioresource': [3154], '100,': [3156], '4395–': [3157], '4403.': [3158], 'B.L.': [3166], 'Chemotaxis': [3171], 'Vibrio': [3176], 'furnissii': [3177], 'sugars.': [3179], 'potential': [3181], 'initiating': [3184], 'catabolic': [3187], 'cascade.': [3188], '268,': [3193], '9405–': [3194], '9409.': [3195], 'T.,': [3201], 'Z.': [3203], 'Survival,': [3208], 'growth,': [3209], 'sex': [3210], 'ratio,': [3211], 'reared': [3221], 'pond.': [3225], 'Freshwater': [3228], 'Ecology': [3229], '16,': [3230], '633–': [3231], '640.': [3232], 'CrossrefWeb': [3233], 'characterization': [3252], 'autochthonous': [3255], 'tract': [3260], 'adult': [3262], 'yellow': [3263], 'grouper': [3264], '(Epinephelus': [3265], 'awoara)': [3266], 'cages.': [3269], '286,': [3271], '184–': [3272], '189.': [3273], 'Citing': [3278], 'Literature': [3279], 'Volume44,': [3280], 'Issue2January': [3281], '2013Pages': [3282], 'FiguresReferencesRelatedInformation': [3284]}, 'cited_by_api_url': 'https://api.openalex.org/works?filter=cites:W2117365580', 'counts_by_year': [{'year': 2022, 'cited_by_count': 2}, {'year': 2021, 'cited_by_count': 3}, {'year': 2019, 'cited_by_count': 4}, {'year': 2016, 'cited_by_count': 2}, {'year': 2015, 'cited_by_count': 1}, {'year': 2013, 'cited_by_count': 1}], 'updated_date': '2024-12-24T14:05:41.326585', 'created_date': '2016-06-24'}
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