Some considerations for analyzing biodiversity using integrative metagenomics and gene networks

Name: Work Video:
Duration: 3 min 30 s
Lucie Bittner; Sébastien Halary; Claude Payri; Corinne Cruaud; Bruno de Reviers; Philippe Lopez; Éric Bapteste
{'id': 'https://openalex.org/W2108017168', 'doi': 'https://doi.org/10.1186/1745-6150-5-47', 'title': 'Some considerations for analyzing biodiversity using integrative metagenomics and gene networks', 'display_name': 'Some considerations for analyzing biodiversity using integrative metagenomics and gene networks', 'publication_year': 2010, 'publication_date': '2010-07-30', 'ids': {'openalex': 'https://openalex.org/W2108017168', 'doi': 'https://doi.org/10.1186/1745-6150-5-47', 'mag': '2108017168', 'pmid': 'https://pubmed.ncbi.nlm.nih.gov/20673351', 'pmcid': 'https://www.ncbi.nlm.nih.gov/pmc/articles/2921367'}, 'language': 'en', 'primary_location': {'is_oa': True, 'landing_page_url': 'https://doi.org/10.1186/1745-6150-5-47', 'pdf_url': 'https://biologydirect.biomedcentral.com/counter/pdf/10.1186/1745-6150-5-47', 'source': {'id': 'https://openalex.org/S42110715', 'display_name': 'Biology Direct', 'issn_l': '1745-6150', 'issn': ['1745-6150'], 'is_oa': True, 'is_in_doaj': True, 'is_core': True, 'host_organization': 'https://openalex.org/P4310320256', 'host_organization_name': 'BioMed Central', 'host_organization_lineage': ['https://openalex.org/P4310319965', 'https://openalex.org/P4310320256'], 'host_organization_lineage_names': ['Springer Nature', 'BioMed Central'], 'type': 'journal'}, 'license': 'cc-by', 'license_id': 'https://openalex.org/licenses/cc-by', 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, 'type': 'article', 'type_crossref': 'journal-article', 'indexed_in': ['crossref', 'doaj', 'pubmed'], 'open_access': {'is_oa': True, 'oa_status': 'gold', 'oa_url': 'https://biologydirect.biomedcentral.com/counter/pdf/10.1186/1745-6150-5-47', 'any_repository_has_fulltext': True}, 'authorships': [{'author_position': 'first', 'author': {'id': 'https://openalex.org/A5055986540', 'display_name': 'Lucie Bittner', 'orcid': 'https://orcid.org/0000-0001-8291-7063'}, 'institutions': [{'id': 'https://openalex.org/I1294671590', 'display_name': 'Centre National de la Recherche Scientifique', 'ror': 'https://ror.org/02feahw73', 'country_code': 'FR', 'type': 'government', 'lineage': ['https://openalex.org/I1294671590']}, {'id': 'https://openalex.org/I4210103322', 'display_name': 'Institut de Systématique, Évolution, Biodiversité', 'ror': 'https://ror.org/01dadvw90', 'country_code': 'FR', 'type': 'facility', 'lineage': ['https://openalex.org/I1294671590', 'https://openalex.org/I159885104', 'https://openalex.org/I2746051580', 'https://openalex.org/I39804081', 'https://openalex.org/I4210103322', 'https://openalex.org/I4210107625', 'https://openalex.org/I4210123595', 'https://openalex.org/I52585520']}], 'countries': ['FR'], 'is_corresponding': False, 'raw_author_name': 'Lucie Bittner', 'raw_affiliation_strings': ["UMR CNRS 7138 Systématique, Adaptation, Evolution, Muséum National d'Histoire Naturelle, Paris, France"], 'affiliations': [{'raw_affiliation_string': "UMR CNRS 7138 Systématique, Adaptation, Evolution, Muséum National d'Histoire Naturelle, Paris, France", 'institution_ids': ['https://openalex.org/I1294671590', 'https://openalex.org/I4210103322']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5105889346', 'display_name': 'Sébastien Halary', 'orcid': None}, 'institutions': [{'id': 'https://openalex.org/I39804081', 'display_name': 'Sorbonne Université', 'ror': 'https://ror.org/02en5vm52', 'country_code': 'FR', 'type': 'education', 'lineage': ['https://openalex.org/I39804081']}, {'id': 'https://openalex.org/I1294671590', 'display_name': 'Centre National de la Recherche Scientifique', 'ror': 'https://ror.org/02feahw73', 'country_code': 'FR', 'type': 'government', 'lineage': ['https://openalex.org/I1294671590']}], 'countries': ['FR'], 'is_corresponding': False, 'raw_author_name': 'Sébastien Halary', 'raw_affiliation_strings': ['UMR CNRS 7138 Systématique, Adaptation, Evolution, Université Pierre et Marie Curie, Paris, France.'], 'affiliations': [{'raw_affiliation_string': 'UMR CNRS 7138 Systématique, Adaptation, Evolution, Université Pierre et Marie Curie, Paris, France.', 'institution_ids': ['https://openalex.org/I39804081', 'https://openalex.org/I1294671590']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5046708112', 'display_name': 'Claude Payri', 'orcid': 'https://orcid.org/0000-0002-0393-6811'}, 'institutions': [{'id': 'https://openalex.org/I4210109151', 'display_name': 'Labex Corail', 'ror': 'https://ror.org/01v4vcm68', 'country_code': 'FR', 'type': 'other', 'lineage': ['https://openalex.org/I4210109151']}], 'countries': ['FR'], 'is_corresponding': False, 'raw_author_name': 'Claude Payri', 'raw_affiliation_strings': ['UR227, IRD-BPA5, Nouméa, Nouvelle-Calédonie, France'], 'affiliations': [{'raw_affiliation_string': 'UR227, IRD-BPA5, Nouméa, Nouvelle-Calédonie, France', 'institution_ids': ['https://openalex.org/I4210109151']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5051923416', 'display_name': 'Corinne Cruaud', 'orcid': 'https://orcid.org/0000-0002-4752-7278'}, 'institutions': [{'id': 'https://openalex.org/I4210115028', 'display_name': 'Genoscope', 'ror': 'https://ror.org/028pnqf58', 'country_code': 'FR', 'type': 'facility', 'lineage': ['https://openalex.org/I4210115028']}], 'countries': ['FR'], 'is_corresponding': False, 'raw_author_name': 'Corinne Cruaud', 'raw_affiliation_strings': ['Genoscope, Centre National de Séquençage, Evry, France'], 'affiliations': [{'raw_affiliation_string': 'Genoscope, Centre National de Séquençage, Evry, France', 'institution_ids': ['https://openalex.org/I4210115028']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5111632706', 'display_name': 'Bruno de Reviers', 'orcid': None}, 'institutions': [{'id': 'https://openalex.org/I4210103322', 'display_name': 'Institut de Systématique, Évolution, Biodiversité', 'ror': 'https://ror.org/01dadvw90', 'country_code': 'FR', 'type': 'facility', 'lineage': ['https://openalex.org/I1294671590', 'https://openalex.org/I159885104', 'https://openalex.org/I2746051580', 'https://openalex.org/I39804081', 'https://openalex.org/I4210103322', 'https://openalex.org/I4210107625', 'https://openalex.org/I4210123595', 'https://openalex.org/I52585520']}, {'id': 'https://openalex.org/I1294671590', 'display_name': 'Centre National de la Recherche Scientifique', 'ror': 'https://ror.org/02feahw73', 'country_code': 'FR', 'type': 'government', 'lineage': ['https://openalex.org/I1294671590']}], 'countries': ['FR'], 'is_corresponding': False, 'raw_author_name': 'Bruno de Reviers', 'raw_affiliation_strings': ["UMR CNRS 7138 Systématique, Adaptation, Evolution, Muséum National d'Histoire Naturelle, Paris, France"], 'affiliations': [{'raw_affiliation_string': "UMR CNRS 7138 Systématique, Adaptation, Evolution, Muséum National d'Histoire Naturelle, Paris, France", 'institution_ids': ['https://openalex.org/I4210103322', 'https://openalex.org/I1294671590']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5038196992', 'display_name': 'Philippe Lopez', 'orcid': 'https://orcid.org/0000-0003-3410-9744'}, 'institutions': [{'id': 'https://openalex.org/I39804081', 'display_name': 'Sorbonne Université', 'ror': 'https://ror.org/02en5vm52', 'country_code': 'FR', 'type': 'education', 'lineage': ['https://openalex.org/I39804081']}, {'id': 'https://openalex.org/I1294671590', 'display_name': 'Centre National de la Recherche Scientifique', 'ror': 'https://ror.org/02feahw73', 'country_code': 'FR', 'type': 'government', 'lineage': ['https://openalex.org/I1294671590']}], 'countries': ['FR'], 'is_corresponding': False, 'raw_author_name': 'Philippe Lopez', 'raw_affiliation_strings': ['UMR CNRS 7138 Systématique, Adaptation, Evolution, Université Pierre et Marie Curie, Paris, France.'], 'affiliations': [{'raw_affiliation_string': 'UMR CNRS 7138 Systématique, Adaptation, Evolution, Université Pierre et Marie Curie, Paris, France.', 'institution_ids': ['https://openalex.org/I39804081', 'https://openalex.org/I1294671590']}]}, {'author_position': 'last', 'author': {'id': 'https://openalex.org/A5061336204', 'display_name': 'Éric Bapteste', 'orcid': 'https://orcid.org/0000-0003-1966-1215'}, 'institutions': [{'id': 'https://openalex.org/I39804081', 'display_name': 'Sorbonne Université', 'ror': 'https://ror.org/02en5vm52', 'country_code': 'FR', 'type': 'education', 'lineage': ['https://openalex.org/I39804081']}, {'id': 'https://openalex.org/I1294671590', 'display_name': 'Centre National de la Recherche Scientifique', 'ror': 'https://ror.org/02feahw73', 'country_code': 'FR', 'type': 'government', 'lineage': ['https://openalex.org/I1294671590']}], 'countries': ['FR'], 'is_corresponding': False, 'raw_author_name': 'Eric Bapteste', 'raw_affiliation_strings': ['UMR CNRS 7138 Systématique, Adaptation, Evolution, Université Pierre et Marie Curie, Paris, France.'], 'affiliations': [{'raw_affiliation_string': 'UMR CNRS 7138 Systématique, Adaptation, Evolution, Université Pierre et Marie Curie, Paris, France.', 'institution_ids': ['https://openalex.org/I39804081', 'https://openalex.org/I1294671590']}]}], 'institution_assertions': [], 'countries_distinct_count': 1, 'institutions_distinct_count': 5, 'corresponding_author_ids': [], 'corresponding_institution_ids': [], 'apc_list': {'value': 1790, 'currency': 'GBP', 'value_usd': 2195, 'provenance': 'doaj'}, 'apc_paid': {'value': 1790, 'currency': 'GBP', 'value_usd': 2195, 'provenance': 'doaj'}, 'fwci': 1.999, 'has_fulltext': True, 'fulltext_origin': 'pdf', 'cited_by_count': 61, 'citation_normalized_percentile': {'value': 0.999985, 'is_in_top_1_percent': True, 'is_in_top_10_percent': True}, 'cited_by_percentile_year': {'min': 95, 'max': 96}, 'biblio': {'volume': '5', 'issue': '1', 'first_page': None, 'last_page': None}, 'is_retracted': False, 'is_paratext': False, 'primary_topic': {'id': 'https://openalex.org/T10015', 'display_name': 'Genomics and Phylogenetic Studies', 'score': 0.9997, 'subfield': {'id': 'https://openalex.org/subfields/1312', 'display_name': 'Molecular Biology'}, 'field': {'id': 'https://openalex.org/fields/13', 'display_name': 'Biochemistry, Genetics and Molecular Biology'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}, 'topics': [{'id': 'https://openalex.org/T10015', 'display_name': 'Genomics and Phylogenetic Studies', 'score': 0.9997, 'subfield': {'id': 'https://openalex.org/subfields/1312', 'display_name': 'Molecular Biology'}, 'field': {'id': 'https://openalex.org/fields/13', 'display_name': 'Biochemistry, Genetics and Molecular Biology'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}, {'id': 'https://openalex.org/T12640', 'display_name': 'Environmental DNA in Biodiversity Studies', 'score': 0.9986, 'subfield': {'id': 'https://openalex.org/subfields/2303', 'display_name': 'Ecology'}, 'field': {'id': 'https://openalex.org/fields/23', 'display_name': 'Environmental Science'}, 'domain': {'id': 'https://openalex.org/domains/3', 'display_name': 'Physical Sciences'}}, {'id': 'https://openalex.org/T11791', 'display_name': 'Microbial Community Ecology and Physiology', 'score': 0.998, 'subfield': {'id': 'https://openalex.org/subfields/2303', 'display_name': 'Ecology'}, 'field': {'id': 'https://openalex.org/fields/23', 'display_name': 'Environmental Science'}, 'domain': {'id': 'https://openalex.org/domains/3', 'display_name': 'Physical Sciences'}}], 'keywords': [{'id': 'https://openalex.org/keywords/identification', 'display_name': 'Identification', 'score': 0.70229065}, {'id': 'https://openalex.org/keywords/dna-barcoding', 'display_name': 'DNA Barcoding', 'score': 0.5593695}, {'id': 'https://openalex.org/keywords/multicellular-organism', 'display_name': 'Multicellular organism', 'score': 0.49373063}, {'id': 'https://openalex.org/keywords/environmental-dna', 'display_name': 'Environmental DNA', 'score': 0.46326807}], 'concepts': [{'id': 'https://openalex.org/C15151743', 'wikidata': 'https://www.wikidata.org/wiki/Q903778', 'display_name': 'Metagenomics', 'level': 3, 'score': 0.8796078}, {'id': 'https://openalex.org/C86803240', 'wikidata': 'https://www.wikidata.org/wiki/Q420', 'display_name': 'Biology', 'level': 0, 'score': 0.83262247}, {'id': 'https://openalex.org/C130217890', 'wikidata': 'https://www.wikidata.org/wiki/Q47041', 'display_name': 'Biodiversity', 'level': 2, 'score': 0.80255044}, {'id': 'https://openalex.org/C116834253', 'wikidata': 'https://www.wikidata.org/wiki/Q2039217', 'display_name': 'Identification (biology)', 'level': 2, 'score': 0.70229065}, {'id': 'https://openalex.org/C70721500', 'wikidata': 'https://www.wikidata.org/wiki/Q177005', 'display_name': 'Computational biology', 'level': 1, 'score': 0.59887314}, {'id': 'https://openalex.org/C141732470', 'wikidata': 'https://www.wikidata.org/wiki/Q1154642', 'display_name': 'DNA barcoding', 'level': 2, 'score': 0.5593695}, {'id': 'https://openalex.org/C74318829', 'wikidata': 'https://www.wikidata.org/wiki/Q36458', 'display_name': 'Multicellular organism', 'level': 3, 'score': 0.49373063}, {'id': 'https://openalex.org/C78458016', 'wikidata': 'https://www.wikidata.org/wiki/Q840400', 'display_name': 'Evolutionary biology', 'level': 1, 'score': 0.48658526}, {'id': 'https://openalex.org/C2779969263', 'wikidata': 'https://www.wikidata.org/wiki/Q25098939', 'display_name': 'Environmental DNA', 'level': 3, 'score': 0.46326807}, {'id': 'https://openalex.org/C18903297', 'wikidata': 'https://www.wikidata.org/wiki/Q7150', 'display_name': 'Ecology', 'level': 1, 'score': 0.40990135}, {'id': 'https://openalex.org/C2522767166', 'wikidata': 'https://www.wikidata.org/wiki/Q2374463', 'display_name': 'Data science', 'level': 1, 'score': 0.40265977}, {'id': 'https://openalex.org/C104317684', 'wikidata': 'https://www.wikidata.org/wiki/Q7187', 'display_name': 'Gene', 'level': 2, 'score': 0.3000329}, {'id': 'https://openalex.org/C54355233', 'wikidata': 'https://www.wikidata.org/wiki/Q7162', 'display_name': 'Genetics', 'level': 1, 'score': 0.23506948}, {'id': 'https://openalex.org/C41008148', 'wikidata': 'https://www.wikidata.org/wiki/Q21198', 'display_name': 'Computer science', 'level': 0, 'score': 0.20701599}], 'mesh': [{'descriptor_ui': 'D053263', 'descriptor_name': 'Gene Regulatory Networks', 'qualifier_ui': 'Q000235', 'qualifier_name': 'genetics', 'is_major_topic': True}, {'descriptor_ui': 'D056186', 'descriptor_name': 'Metagenomics', 'qualifier_ui': 'Q000379', 'qualifier_name': 'methods', 'is_major_topic': True}, {'descriptor_ui': 'D000818', 'descriptor_name': 'Animals', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D044822', 'descriptor_name': 'Biodiversity', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D006801', 'descriptor_name': 'Humans', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D008962', 'descriptor_name': 'Models, Theoretical', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}], 'locations_count': 5, 'locations': [{'is_oa': True, 'landing_page_url': 'https://doi.org/10.1186/1745-6150-5-47', 'pdf_url': 'https://biologydirect.biomedcentral.com/counter/pdf/10.1186/1745-6150-5-47', 'source': {'id': 'https://openalex.org/S42110715', 'display_name': 'Biology Direct', 'issn_l': '1745-6150', 'issn': ['1745-6150'], 'is_oa': True, 'is_in_doaj': True, 'is_core': True, 'host_organization': 'https://openalex.org/P4310320256', 'host_organization_name': 'BioMed Central', 'host_organization_lineage': ['https://openalex.org/P4310319965', 'https://openalex.org/P4310320256'], 'host_organization_lineage_names': ['Springer Nature', 'BioMed Central'], 'type': 'journal'}, 'license': 'cc-by', 'license_id': 'https://openalex.org/licenses/cc-by', 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, {'is_oa': True, 'landing_page_url': 'https://hal.archives-ouvertes.fr/hal-02922363', 'pdf_url': 'https://hal.science/hal-02922363/document', 'source': {'id': 'https://openalex.org/S4306402512', 'display_name': 'HAL (Le Centre pour la Communication Scientifique Directe)', 'issn_l': None, 'issn': None, 'is_oa': True, 'is_in_doaj': False, 'is_core': False, 'host_organization': 'https://openalex.org/I1294671590', 'host_organization_name': 'Centre National de la Recherche Scientifique', 'host_organization_lineage': ['https://openalex.org/I1294671590'], 'host_organization_lineage_names': ['Centre National de la Recherche Scientifique'], 'type': 'repository'}, 'license': 'other-oa', 'license_id': 'https://openalex.org/licenses/other-oa', 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, {'is_oa': False, 'landing_page_url': 'https://doaj.org/article/da06ccb50a0c49e5ae37cb5f62ee8d59', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S4306401280', 'display_name': 'DOAJ (DOAJ: Directory of Open Access Journals)', 'issn_l': None, 'issn': None, 'is_oa': True, 'is_in_doaj': False, 'is_core': False, 'host_organization': None, 'host_organization_name': None, 'host_organization_lineage': [], 'host_organization_lineage_names': [], 'type': 'repository'}, 'license': None, 'license_id': None, 'version': None, 'is_accepted': False, 'is_published': False}, {'is_oa': True, 'landing_page_url': 'https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2921367', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S2764455111', 'display_name': 'PubMed Central', 'issn_l': None, 'issn': None, 'is_oa': True, 'is_in_doaj': False, 'is_core': False, 'host_organization': 'https://openalex.org/I1299303238', 'host_organization_name': 'National Institutes of Health', 'host_organization_lineage': ['https://openalex.org/I1299303238'], 'host_organization_lineage_names': ['National Institutes of Health'], 'type': 'repository'}, 'license': None, 'license_id': None, 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, {'is_oa': False, 'landing_page_url': 'https://pubmed.ncbi.nlm.nih.gov/20673351', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S4306525036', 'display_name': 'PubMed', 'issn_l': None, 'issn': None, 'is_oa': False, 'is_in_doaj': False, 'is_core': False, 'host_organization': 'https://openalex.org/I1299303238', 'host_organization_name': 'National Institutes of Health', 'host_organization_lineage': ['https://openalex.org/I1299303238'], 'host_organization_lineage_names': ['National Institutes of Health'], 'type': 'repository'}, 'license': None, 'license_id': None, 'version': None, 'is_accepted': False, 'is_published': False}], 'best_oa_location': {'is_oa': True, 'landing_page_url': 'https://doi.org/10.1186/1745-6150-5-47', 'pdf_url': 'https://biologydirect.biomedcentral.com/counter/pdf/10.1186/1745-6150-5-47', 'source': {'id': 'https://openalex.org/S42110715', 'display_name': 'Biology Direct', 'issn_l': '1745-6150', 'issn': ['1745-6150'], 'is_oa': True, 'is_in_doaj': True, 'is_core': True, 'host_organization': 'https://openalex.org/P4310320256', 'host_organization_name': 'BioMed Central', 'host_organization_lineage': ['https://openalex.org/P4310319965', 'https://openalex.org/P4310320256'], 'host_organization_lineage_names': ['Springer Nature', 'BioMed Central'], 'type': 'journal'}, 'license': 'cc-by', 'license_id': 'https://openalex.org/licenses/cc-by', 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, 'sustainable_development_goals': [{'id': 'https://metadata.un.org/sdg/15', 'score': 0.78, 'display_name': 'Life on land'}], 'grants': [], 'datasets': [], 'versions': [], 'referenced_works_count': 119, 'referenced_works': ['https://openalex.org/W1509830867', 'https://openalex.org/W1521348547', 'https://openalex.org/W1525985997', 'https://openalex.org/W1564554007', 'https://openalex.org/W1583443197', 'https://openalex.org/W1711571047', 'https://openalex.org/W1894460863', 'https://openalex.org/W1898463343', 'https://openalex.org/W1949176574', 'https://openalex.org/W1964106002', 'https://openalex.org/W1968531390', 'https://openalex.org/W1971088599', 'https://openalex.org/W1973436181', 'https://openalex.org/W1975157464', 'https://openalex.org/W1977800104', 'https://openalex.org/W1979649655', 'https://openalex.org/W1980436913', 'https://openalex.org/W1984399847', 'https://openalex.org/W1986388492', 'https://openalex.org/W1989348205', 'https://openalex.org/W1991605201', 'https://openalex.org/W1996545495', 'https://openalex.org/W2001031283', 'https://openalex.org/W2001203824', 'https://openalex.org/W2005188161', 'https://openalex.org/W2006570348', 'https://openalex.org/W2007168636', 'https://openalex.org/W2008635309', 'https://openalex.org/W2010548211', 'https://openalex.org/W2011870999', 'https://openalex.org/W2013753932', 'https://openalex.org/W2016325533', 'https://openalex.org/W2021380741', 'https://openalex.org/W2021699663', 'https://openalex.org/W2024305671', 'https://openalex.org/W2029574650', 'https://openalex.org/W2029979483', 'https://openalex.org/W2036283243', 'https://openalex.org/W2040452926', 'https://openalex.org/W2045881714', 'https://openalex.org/W2047341547', 'https://openalex.org/W2053062370', 'https://openalex.org/W2055043387', 'https://openalex.org/W2055057012', 'https://openalex.org/W2057423125', 'https://openalex.org/W2060107067', 'https://openalex.org/W2060157029', 'https://openalex.org/W2061013940', 'https://openalex.org/W2063996402', 'https://openalex.org/W2066596168', 'https://openalex.org/W2071095972', 'https://openalex.org/W2071510336', 'https://openalex.org/W2072590703', 'https://openalex.org/W2072872297', 'https://openalex.org/W2077039556', 'https://openalex.org/W2078586104', 'https://openalex.org/W2078851965', 'https://openalex.org/W2080265498', 'https://openalex.org/W2081926519', 'https://openalex.org/W2086996637', 'https://openalex.org/W2097793126', 'https://openalex.org/W2099620301', 'https://openalex.org/W2099901798', 'https://openalex.org/W2100565537', 'https://openalex.org/W2102883209', 'https://openalex.org/W2103304336', 'https://openalex.org/W2103740336', 'https://openalex.org/W2103762500', 'https://openalex.org/W2106265368', 'https://openalex.org/W2107974372', 'https://openalex.org/W2109790809', 'https://openalex.org/W2112061642', 'https://openalex.org/W2114034054', 'https://openalex.org/W2115576371', 'https://openalex.org/W2115857491', 'https://openalex.org/W2116895571', 'https://openalex.org/W2117865503', 'https://openalex.org/W2123849235', 'https://openalex.org/W2125121305', 'https://openalex.org/W2126809954', 'https://openalex.org/W2127847431', 'https://openalex.org/W2131342905', 'https://openalex.org/W2131961145', 'https://openalex.org/W2133798932', 'https://openalex.org/W2134375163', 'https://openalex.org/W2134650310', 'https://openalex.org/W2135391347', 'https://openalex.org/W2135778789', 'https://openalex.org/W2139154417', 'https://openalex.org/W2139436782', 'https://openalex.org/W2139637265', 'https://openalex.org/W2141047744', 'https://openalex.org/W2141203438', 'https://openalex.org/W2142237411', 'https://openalex.org/W2142402047', 'https://openalex.org/W2142849726', 'https://openalex.org/W2143496906', 'https://openalex.org/W2148723086', 'https://openalex.org/W2150914285', 'https://openalex.org/W2151606371', 'https://openalex.org/W2151978039', 'https://openalex.org/W2156592409', 'https://openalex.org/W2166972836', 'https://openalex.org/W2167924391', 'https://openalex.org/W2168416981', 'https://openalex.org/W2171546795', 'https://openalex.org/W2171894968', 'https://openalex.org/W2186369223', 'https://openalex.org/W2413345075', 'https://openalex.org/W2899643364', 'https://openalex.org/W3082743604', 'https://openalex.org/W3121953277', 'https://openalex.org/W3217097258', 'https://openalex.org/W4211079334', 'https://openalex.org/W4231601595', 'https://openalex.org/W4285719527', 'https://openalex.org/W4388248067', 'https://openalex.org/W653376775', 'https://openalex.org/W89386817'], 'related_works': ['https://openalex.org/W638577851', 'https://openalex.org/W4281994149', 'https://openalex.org/W4247350725', 'https://openalex.org/W345142232', 'https://openalex.org/W2951985551', 'https://openalex.org/W2805325890', 'https://openalex.org/W2522472446', 'https://openalex.org/W2166797439', 'https://openalex.org/W2145740829', 'https://openalex.org/W1963836821'], 'abstract_inverted_index': {'Abstract': [0], 'Background': [1], 'Improving': [2], 'knowledge': [3], 'of': [4, 33, 46, 64, 82, 96, 156, 160, 187, 199, 208, 221], 'biodiversity': [5, 196, 210], 'will': [6], 'benefit': [7], 'conservation': [8], 'biology,': [9], 'enhance': [10], 'bioremediation': [11], 'studies,': [12], 'and': [13, 28, 41, 62, 88, 107, 137, 173, 175, 183, 235, 248], 'could': [14], 'lead': [15], 'to': [16, 26, 29, 37, 129, 165, 225, 228], 'new': [17], 'medical': [18], 'treatments.': [19], 'However': [20], 'there': [21, 52], 'is': [22], 'no': [23], 'standard': [24], 'approach': [25], 'estimate': [27], 'compare': [30], 'the': [31, 47, 60, 73, 80, 85, 93, 134, 139, 144, 147, 157, 188, 192, 200, 206], 'diversity': [32], 'different': [34], 'environments,': [35], 'or': [36, 223], 'study': [38], 'its': [39], 'past,': [40], 'possibly,': [42], 'future': [43], 'evolution.': [44], 'Presentation': [45], 'hypothesis': [48, 148, 201], 'We': [49, 149], 'argue': [50], 'that': [51], 'are': [53], 'two': [54, 161], 'conditions': [55], 'for': [56], 'significant': [57], 'progress': [58], 'in': [59, 143, 195], 'identification': [61], 'quantification': [63], 'biodiversity.': [65], 'First,': [66], 'integrative': [67], 'metagenomic': [68, 109, 118], 'studies': [69], '-': [70, 99], 'aiming': [71], 'at': [72, 79], 'simultaneous': [74], 'examination': [75], '(or': [76], 'even': [77], 'better': [78], 'integration)': [81], 'observations': [83], 'about': [84], 'elements,': [86], 'functions': [87], 'evolutionary': [89], 'processes': [90, 141], 'captured': [91], 'by': [92, 184, 191, 218, 232, 256, 264, 274], 'massive': [94], 'sequencing': [95], 'multiple': [97], 'markers': [98], 'should': [100, 120], 'be': [101, 121], 'preferred': [102], 'over': [103, 108], 'DNA': [104, 176], 'barcoding': [105, 177], 'projects': [106, 110], 'based': [111], 'on': [112, 133, 138, 171, 180], 'a': [113, 154], 'single': [114], 'marker.': [115], 'Second,': [116], 'such': [117], 'data': [119], 'studied': [122], 'with': [123, 212], 'novel': [124], 'inclusive': [125], 'network-based': [126], 'approaches,': [127], 'designed': [128], 'draw': [130], 'inferences': [131], 'both': [132], 'many': [135, 140], 'units': [136], 'present': [142], 'environments.': [145], 'Testing': [146], 'reached': [150], 'these': [151, 241], 'conclusions': [152], 'through': [153], 'comparison': [155], 'theoretical': [158], 'foundations': [159], 'molecular': [162], 'approaches': [163], 'seeking': [164], 'assess': [166], 'biodiversity:': [167], 'metagenomics': [168], '(mostly': [169, 178], 'used': [170, 179], 'prokaryotes': [172], 'protists)': [174], 'multicellular': [181], 'eukaryotes),': [182], 'pragmatic': [185], 'considerations': [186], 'issues': [189], 'caused': [190, 231], "'species": [193], "problem'": [194], 'studies.': [197], 'Implications': [198], 'Evolutionary': [202], 'gene': [203], 'networks': [204, 242], 'reduce': [205], 'risk': [207], 'producing': [209], 'estimates': [211], 'limited': [213], 'explanatory': [214], 'power,': [215], 'biased': [216], 'either': [217], 'unequal': [219], 'rates': [220], 'LGT,': [222], 'difficult': [224], 'interpret': [226], 'due': [227], '(practical)': [229], 'problems': [230], 'type': [233, 236], 'I': [234], 'II': [237], 'grey': [238], 'zones.': [239], 'Moreover,': [240], 'would': [243], 'easily': [244], 'accommodate': [245], 'additional': [246], '(meta)transcriptomic': [247], '(meta)proteomic': [249], 'data.': [250], 'Reviewers': [251], 'This': [252], 'article': [253], 'was': [254], 'reviewed': [255], 'Pr.': [257, 265, 275], 'William': [258], 'Martin,': [259], 'Dr.': [260, 270], 'David': [261], 'Williams': [262], '(nominated': [263, 273], 'J': [266], 'Peter': [267], 'Gogarten)': [268], '&amp;': [269], 'James': [271], 'McInerney': [272], 'John': [276], 'Logsdon).': [277]}, 'cited_by_api_url': 'https://api.openalex.org/works?filter=cites:W2108017168', 'counts_by_year': [{'year': 2024, 'cited_by_count': 1}, {'year': 2023, 'cited_by_count': 1}, {'year': 2022, 'cited_by_count': 2}, {'year': 2021, 'cited_by_count': 5}, {'year': 2020, 'cited_by_count': 2}, {'year': 2019, 'cited_by_count': 3}, {'year': 2018, 'cited_by_count': 8}, {'year': 2017, 'cited_by_count': 4}, {'year': 2016, 'cited_by_count': 5}, {'year': 2015, 'cited_by_count': 2}, {'year': 2014, 'cited_by_count': 10}, {'year': 2013, 'cited_by_count': 8}, {'year': 2012, 'cited_by_count': 3}], 'updated_date': '2024-12-21T01:34:25.268493', 'created_date': '2016-06-24'}
Publication Information

Basic Information

Access and Citation

AI Researcher Chatbot

Primary Location

Authors

Topics

Keywords

Related Works
