Publication Information

{'id': 'https://openalex.org/W2101269698', 'doi': 'https://doi.org/10.1093/bioinformatics/bth137', 'title': 'Development of joint application strategies for two microbial gene finders', 'display_name': 'Development of joint application strategies for two microbial gene finders', 'publication_year': 2004, 'publication_date': '2004-02-26', 'ids': {'openalex': 'https://openalex.org/W2101269698', 'doi': 'https://doi.org/10.1093/bioinformatics/bth137', 'mag': '2101269698', 'pmid': 'https://pubmed.ncbi.nlm.nih.gov/14988122'}, 'language': 'en', 'primary_location': {'is_oa': True, 'landing_page_url': 'https://doi.org/10.1093/bioinformatics/bth137', 'pdf_url': 'https://academic.oup.com/bioinformatics/article-pdf/20/10/1622/48905950/bioinformatics_20_10_1622.pdf', 'source': {'id': 'https://openalex.org/S52395412', 'display_name': 'Bioinformatics', 'issn_l': '1367-4803', 'issn': ['1367-4803', '1367-4811'], 'is_oa': True, 'is_in_doaj': True, 'is_core': True, 'host_organization': 'https://openalex.org/P4310311648', 'host_organization_name': 'Oxford University Press', 'host_organization_lineage': ['https://openalex.org/P4310311647', 'https://openalex.org/P4310311648'], 'host_organization_lineage_names': ['University of Oxford', 'Oxford University Press'], 'type': 'journal'}, 'license': None, 'license_id': None, 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, 'type': 'article', 'type_crossref': 'journal-article', 'indexed_in': ['crossref', 'pubmed'], 'open_access': {'is_oa': True, 'oa_status': 'bronze', 'oa_url': 'https://academic.oup.com/bioinformatics/article-pdf/20/10/1622/48905950/bioinformatics_20_10_1622.pdf', 'any_repository_has_fulltext': False}, 'authorships': [{'author_position': 'first', 'author': {'id': 'https://openalex.org/A5081103408', 'display_name': 'Alice C. McHardy', 'orcid': 'https://orcid.org/0000-0003-2370-3430'}, 'institutions': [], 'countries': [], 'is_corresponding': False, 'raw_author_name': 'Alice C. McHardy', 'raw_affiliation_strings': ['Center for Biotechnology (CeBiTec)#TAB#'], 'affiliations': [{'raw_affiliation_string': 'Center for Biotechnology (CeBiTec)#TAB#', 'institution_ids': []}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5088085534', 'display_name': 'Alexander Goesmann', 'orcid': 'https://orcid.org/0000-0002-7086-2568'}, 'institutions': [], 'countries': [], 'is_corresponding': False, 'raw_author_name': 'Alexander Goesmann', 'raw_affiliation_strings': ['Center for Biotechnology (CeBiTec)#TAB#'], 'affiliations': [{'raw_affiliation_string': 'Center for Biotechnology (CeBiTec)#TAB#', 'institution_ids': []}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5082682293', 'display_name': 'Alfred Pühler', 'orcid': 'https://orcid.org/0000-0003-4723-2960'}, 'institutions': [{'id': 'https://openalex.org/I20121455', 'display_name': 'Bielefeld University', 'ror': 'https://ror.org/02hpadn98', 'country_code': 'DE', 'type': 'education', 'lineage': ['https://openalex.org/I20121455']}], 'countries': ['DE'], 'is_corresponding': False, 'raw_author_name': 'Alfred Pühler', 'raw_affiliation_strings': ['Lehrstuhl für Genetik, Department of Biology, Bielefeld University, 33594 Bielefeld, Germany#TAB#'], 'affiliations': [{'raw_affiliation_string': 'Lehrstuhl für Genetik, Department of Biology, Bielefeld University, 33594 Bielefeld, Germany#TAB#', 'institution_ids': ['https://openalex.org/I20121455']}]}, {'author_position': 'last', 'author': {'id': 'https://openalex.org/A5086419862', 'display_name': 'Folker Meyer', 'orcid': 'https://orcid.org/0000-0003-1112-2284'}, 'institutions': [], 'countries': [], 'is_corresponding': False, 'raw_author_name': 'Folker Meyer', 'raw_affiliation_strings': ['Center for Biotechnology (CeBiTec)#TAB#'], 'affiliations': [{'raw_affiliation_string': 'Center for Biotechnology (CeBiTec)#TAB#', 'institution_ids': []}]}], 'institution_assertions': [], 'countries_distinct_count': 1, 'institutions_distinct_count': 1, 'corresponding_author_ids': [], 'corresponding_institution_ids': [], 'apc_list': {'value': 3618, 'currency': 'USD', 'value_usd': 3618, 'provenance': 'doaj'}, 'apc_paid': None, 'fwci': 3.089, 'has_fulltext': True, 'fulltext_origin': 'ngrams', 'cited_by_count': 80, 'citation_normalized_percentile': {'value': 0.716342, 'is_in_top_1_percent': False, 'is_in_top_10_percent': False}, 'cited_by_percentile_year': {'min': 95, 'max': 96}, 'biblio': {'volume': '20', 'issue': '10', 'first_page': '1622', 'last_page': '1631'}, 'is_retracted': False, 'is_paratext': False, 'primary_topic': {'id': 'https://openalex.org/T10015', 'display_name': 'Genomics and Phylogenetic Studies', 'score': 0.9998, 'subfield': {'id': 'https://openalex.org/subfields/1312', 'display_name': 'Molecular Biology'}, 'field': {'id': 'https://openalex.org/fields/13', 'display_name': 'Biochemistry, Genetics and Molecular Biology'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}, 'topics': [{'id': 'https://openalex.org/T10015', 'display_name': 'Genomics and Phylogenetic Studies', 'score': 0.9998, 'subfield': {'id': 'https://openalex.org/subfields/1312', 'display_name': 'Molecular Biology'}, 'field': {'id': 'https://openalex.org/fields/13', 'display_name': 'Biochemistry, Genetics and Molecular Biology'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}, {'id': 'https://openalex.org/T12254', 'display_name': 'Machine Learning in Bioinformatics', 'score': 0.9968, 'subfield': {'id': 'https://openalex.org/subfields/1312', 'display_name': 'Molecular Biology'}, 'field': {'id': 'https://openalex.org/fields/13', 'display_name': 'Biochemistry, Genetics and Molecular Biology'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}, {'id': 'https://openalex.org/T10521', 'display_name': 'RNA and protein synthesis mechanisms', 'score': 0.9965, 'subfield': {'id': 'https://openalex.org/subfields/1312', 'display_name': 'Molecular Biology'}, 'field': {'id': 'https://openalex.org/fields/13', 'display_name': 'Biochemistry, Genetics and Molecular Biology'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}], 'keywords': [{'id': 'https://openalex.org/keywords/gene-prediction', 'display_name': 'Gene prediction', 'score': 0.73357916}, {'id': 'https://openalex.org/keywords/gene-annotation', 'display_name': 'Gene Annotation', 'score': 0.680017}, {'id': 'https://openalex.org/keywords/alignment-free-sequence-analysis', 'display_name': 'Alignment-free sequence analysis', 'score': 0.5662167}, {'id': 'https://openalex.org/keywords/similarity', 'display_name': 'Similarity (geometry)', 'score': 0.46851707}, {'id': 'https://openalex.org/keywords/sequence', 'display_name': 'Sequence (biology)', 'score': 0.44600996}, {'id': 'https://openalex.org/keywords/bacterial-genome-size', 'display_name': 'Bacterial genome size', 'score': 0.41592482}], 'concepts': [{'id': 'https://openalex.org/C105565629', 'wikidata': 'https://www.wikidata.org/wiki/Q1248292', 'display_name': 'Gene prediction', 'level': 4, 'score': 0.73357916}, {'id': 'https://openalex.org/C141231307', 'wikidata': 'https://www.wikidata.org/wiki/Q7020', 'display_name': 'Genome', 'level': 3, 'score': 0.73209715}, {'id': 'https://openalex.org/C2776321320', 'wikidata': 'https://www.wikidata.org/wiki/Q857525', 'display_name': 'Annotation', 'level': 2, 'score': 0.69606143}, {'id': 'https://openalex.org/C2908923196', 'wikidata': 'https://www.wikidata.org/wiki/Q5205742', 'display_name': 'Gene Annotation', 'level': 4, 'score': 0.680017}, {'id': 'https://openalex.org/C89566754', 'wikidata': 'https://www.wikidata.org/wiki/Q2273828', 'display_name': 'Genome project', 'level': 4, 'score': 0.5963716}, {'id': 'https://openalex.org/C180384323', 'wikidata': 'https://www.wikidata.org/wiki/Q16335137', 'display_name': 'Alignment-free sequence analysis', 'level': 5, 'score': 0.5662167}, {'id': 'https://openalex.org/C104317684', 'wikidata': 'https://www.wikidata.org/wiki/Q7187', 'display_name': 'Gene', 'level': 2, 'score': 0.56272733}, {'id': 'https://openalex.org/C70721500', 'wikidata': 'https://www.wikidata.org/wiki/Q177005', 'display_name': 'Computational biology', 'level': 1, 'score': 0.56271374}, {'id': 'https://openalex.org/C51679486', 'wikidata': 'https://www.wikidata.org/wiki/Q380546', 'display_name': 'DNA sequencing', 'level': 3, 'score': 0.51033777}, {'id': 'https://openalex.org/C41008148', 'wikidata': 'https://www.wikidata.org/wiki/Q21198', 'display_name': 'Computer science', 'level': 0, 'score': 0.47287104}, {'id': 'https://openalex.org/C103278499', 'wikidata': 'https://www.wikidata.org/wiki/Q254465', 'display_name': 'Similarity (geometry)', 'level': 3, 'score': 0.46851707}, {'id': 'https://openalex.org/C86803240', 'wikidata': 'https://www.wikidata.org/wiki/Q420', 'display_name': 'Biology', 'level': 0, 'score': 0.45055604}, {'id': 'https://openalex.org/C2778112365', 'wikidata': 'https://www.wikidata.org/wiki/Q3511065', 'display_name': 'Sequence (biology)', 'level': 2, 'score': 0.44600996}, {'id': 'https://openalex.org/C3742359', 'wikidata': 'https://www.wikidata.org/wiki/Q4839988', 'display_name': 'Bacterial genome size', 'level': 4, 'score': 0.41592482}, {'id': 'https://openalex.org/C45484198', 'wikidata': 'https://www.wikidata.org/wiki/Q827246', 'display_name': 'Sequence alignment', 'level': 4, 'score': 0.36363387}, {'id': 'https://openalex.org/C54355233', 'wikidata': 'https://www.wikidata.org/wiki/Q7162', 'display_name': 'Genetics', 'level': 1, 'score': 0.3421844}, {'id': 'https://openalex.org/C154945302', 'wikidata': 'https://www.wikidata.org/wiki/Q11660', 'display_name': 'Artificial intelligence', 'level': 1, 'score': 0.17303574}, {'id': 'https://openalex.org/C167625842', 'wikidata': 'https://www.wikidata.org/wiki/Q899763', 'display_name': 'Peptide sequence', 'level': 3, 'score': 0.07519308}, {'id': 'https://openalex.org/C115961682', 'wikidata': 'https://www.wikidata.org/wiki/Q860623', 'display_name': 'Image (mathematics)', 'level': 2, 'score': 0.0}], 'mesh': [{'descriptor_ui': 'D000465', 'descriptor_name': 'Algorithms', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': True}, {'descriptor_ui': 'D004269', 'descriptor_name': 'DNA, Bacterial', 'qualifier_ui': 'Q000737', 'qualifier_name': 'chemistry', 'is_major_topic': True}, {'descriptor_ui': 'D004269', 'descriptor_name': 'DNA, Bacterial', 'qualifier_ui': 'Q000235', 'qualifier_name': 'genetics', 'is_major_topic': True}, {'descriptor_ui': 'D020869', 'descriptor_name': 'Gene Expression Profiling', 'qualifier_ui': 'Q000379', 'qualifier_name': 'methods', 'is_major_topic': True}, {'descriptor_ui': 'D016680', 'descriptor_name': 'Genome, Bacterial', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': True}, {'descriptor_ui': 'D016415', 'descriptor_name': 'Sequence Alignment', 'qualifier_ui': 'Q000379', 'qualifier_name': 'methods', 'is_major_topic': True}, {'descriptor_ui': 'D017422', 'descriptor_name': 'Sequence Analysis, DNA', 'qualifier_ui': 'Q000379', 'qualifier_name': 'methods', 'is_major_topic': True}, {'descriptor_ui': 'D004269', 'descriptor_name': 'DNA, Bacterial', 'qualifier_ui': 'Q000032', 'qualifier_name': 'analysis', 'is_major_topic': False}, {'descriptor_ui': 'D004269', 'descriptor_name': 'DNA, Bacterial', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D020869', 'descriptor_name': 'Gene Expression Profiling', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D016415', 'descriptor_name': 'Sequence Alignment', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D017422', 'descriptor_name': 'Sequence Analysis, DNA', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}], 'locations_count': 2, 'locations': [{'is_oa': True, 'landing_page_url': 'https://doi.org/10.1093/bioinformatics/bth137', 'pdf_url': 'https://academic.oup.com/bioinformatics/article-pdf/20/10/1622/48905950/bioinformatics_20_10_1622.pdf', 'source': {'id': 'https://openalex.org/S52395412', 'display_name': 'Bioinformatics', 'issn_l': '1367-4803', 'issn': ['1367-4803', '1367-4811'], 'is_oa': True, 'is_in_doaj': True, 'is_core': True, 'host_organization': 'https://openalex.org/P4310311648', 'host_organization_name': 'Oxford University Press', 'host_organization_lineage': ['https://openalex.org/P4310311647', 'https://openalex.org/P4310311648'], 'host_organization_lineage_names': ['University of Oxford', 'Oxford University Press'], 'type': 'journal'}, 'license': None, 'license_id': None, 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, {'is_oa': False, 'landing_page_url': 'https://pubmed.ncbi.nlm.nih.gov/14988122', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S4306525036', 'display_name': 'PubMed', 'issn_l': None, 'issn': None, 'is_oa': False, 'is_in_doaj': False, 'is_core': False, 'host_organization': 'https://openalex.org/I1299303238', 'host_organization_name': 'National Institutes of Health', 'host_organization_lineage': ['https://openalex.org/I1299303238'], 'host_organization_lineage_names': ['National Institutes of Health'], 'type': 'repository'}, 'license': None, 'license_id': None, 'version': None, 'is_accepted': False, 'is_published': False}], 'best_oa_location': {'is_oa': True, 'landing_page_url': 'https://doi.org/10.1093/bioinformatics/bth137', 'pdf_url': 'https://academic.oup.com/bioinformatics/article-pdf/20/10/1622/48905950/bioinformatics_20_10_1622.pdf', 'source': {'id': 'https://openalex.org/S52395412', 'display_name': 'Bioinformatics', 'issn_l': '1367-4803', 'issn': ['1367-4803', '1367-4811'], 'is_oa': True, 'is_in_doaj': True, 'is_core': True, 'host_organization': 'https://openalex.org/P4310311648', 'host_organization_name': 'Oxford University Press', 'host_organization_lineage': ['https://openalex.org/P4310311647', 'https://openalex.org/P4310311648'], 'host_organization_lineage_names': ['University of Oxford', 'Oxford University Press'], 'type': 'journal'}, 'license': None, 'license_id': None, 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, 'sustainable_development_goals': [], 'grants': [], 'datasets': [], 'versions': [], 'referenced_works_count': 26, 'referenced_works': ['https://openalex.org/W1809097252', 'https://openalex.org/W1873623553', 'https://openalex.org/W1975061104', 'https://openalex.org/W1990748933', 'https://openalex.org/W1995661119', 'https://openalex.org/W2004072996', 'https://openalex.org/W2026570450', 'https://openalex.org/W2032870665', 'https://openalex.org/W2053150867', 'https://openalex.org/W2057099031', 'https://openalex.org/W2084787613', 'https://openalex.org/W2091560728', 'https://openalex.org/W2106090237', 'https://openalex.org/W2107432340', 'https://openalex.org/W2125347557', 'https://openalex.org/W2127432614', 'https://openalex.org/W2133253129', 'https://openalex.org/W2133312664', 'https://openalex.org/W2143235667', 'https://openalex.org/W2154478075', 'https://openalex.org/W2158714788', 'https://openalex.org/W2164217177', 'https://openalex.org/W2164926676', 'https://openalex.org/W2168846269', 'https://openalex.org/W2170488656', 'https://openalex.org/W4285719527'], 'related_works': ['https://openalex.org/W4388524370', 'https://openalex.org/W4231584750', 'https://openalex.org/W3031567038', 'https://openalex.org/W2955310315', 'https://openalex.org/W2294108133', 'https://openalex.org/W2279845149', 'https://openalex.org/W2101269698', 'https://openalex.org/W2078942911', 'https://openalex.org/W2059565715', 'https://openalex.org/W2024689260'], 'abstract_inverted_index': {'Abstract': [0], 'Motivation:': [1], 'As': [2], 'a': [3, 90, 97, 117, 127, 144], 'starting': [4], 'point': [5], 'in': [6, 22, 81, 109, 143, 147, 153], 'annotation': [7, 174, 195], 'of': [8, 19, 34, 57, 65, 84, 101, 112, 120, 175, 191], 'bacterial': [9], 'genomes,': [10], 'gene': [11, 68, 74, 138, 188], 'finding': [12, 75, 139], 'programs': [13], 'are': [14], 'used': [15], 'for': [16, 48, 162, 172], 'the': [17, 23, 28, 55, 63, 72, 82, 110, 137, 173, 187, 192], 'prediction': [18, 189], 'functional': [20], 'elements': [21], 'DNA': [24], 'sequence.': [25], 'Due': [26], 'to': [27, 44, 70, 136, 155], 'faster': [29], 'pace': [30], 'and': [31, 105], 'increasing': [32], 'number': [33], 'genome': [35, 123, 194], 'projects': [36], 'currently': [37, 169], 'underway,': [38], 'it': [39, 88], 'is': [40, 78, 106, 151, 159, 168], 'becoming': [41], 'especially': [42, 160], 'important': [43], 'have': [45, 183], 'performant': [46], 'methods': [47, 181], 'this': [49], 'task.': [50], 'Results:': [51], 'This': [52, 141], 'study': [53], 'describes': [54], 'development': [56], 'joint': [58], 'application': [59, 129], 'strategies': [60], 'that': [61], 'combine': [62], 'strengths': [64], 'two': [66], 'microbial': [67, 122, 177], 'finders': [69], 'improve': [71], 'overall': [73], 'performance.': [76], 'Critica': [77], 'very': [79, 98], 'specific': [80], 'detection': [83, 111], 'similarity-supported': [85], 'genes': [86], 'as': [87], 'uses': [89], 'comparative': [91], 'sequence': [92, 103], 'analysis-based': [93], 'approach.': [94], 'Glimmer': [95], 'employs': [96], 'sophisticated': [99], 'model': [100], 'genomic': [102], 'properties': [104], 'sensitive': [107], 'also': [108], 'organism-specific': [113], 'genes.': [114], 'Based': [115], 'on': [116], 'data': [118], 'set': [119], '113': [121], 'sequences,': [124], 'we': [125], 'optimized': [126], 'combined': [128], 'approach': [130], 'using': [131], 'different': [132], 'parameters': [133], 'with': [134], 'relevance': [135], 'problem.': [140], 'results': [142], 'significant': [145], 'improvement': [146, 158], 'specificity': [148], 'while': [149], 'there': [150], 'similarity': [152], 'sensitivity': [154], 'Glimmer.': [156], 'The': [157, 166, 180], 'pronounced': [161], 'GC': [163], 'rich': [164], 'genomes.': [165, 178], 'method': [167], 'being': [170], 'applied': [171], 'several': [176], 'Availability:': [179], 'described': [182], 'been': [184], 'implemented': [185], 'within': [186], 'component': [190], 'GenDB': [193], 'system.': [196]}, 'cited_by_api_url': 'https://api.openalex.org/works?filter=cites:W2101269698', 'counts_by_year': [{'year': 2021, 'cited_by_count': 1}, {'year': 2019, 'cited_by_count': 1}, {'year': 2017, 'cited_by_count': 1}, {'year': 2016, 'cited_by_count': 1}, {'year': 2014, 'cited_by_count': 3}, {'year': 2013, 'cited_by_count': 3}, {'year': 2012, 'cited_by_count': 8}], 'updated_date': '2024-12-13T16:32:33.283601', 'created_date': '2016-06-24'}