Publication Information

{'id': 'https://openalex.org/W2048232989', 'doi': 'https://doi.org/10.3354/ame01222', 'title': 'Community structure of marine bacterioplankton: patterns, networks, and relationships to function', 'display_name': 'Community structure of marine bacterioplankton: patterns, networks, and relationships to function', 'publication_year': 2008, 'publication_date': '2008-06-04', 'ids': {'openalex': 'https://openalex.org/W2048232989', 'doi': 'https://doi.org/10.3354/ame01222', 'mag': '2048232989'}, 'language': 'en', 'primary_location': {'is_oa': True, 'landing_page_url': 'https://doi.org/10.3354/ame01222', 'pdf_url': 'https://www.int-res.com/articles/ame_oa/a053p069.pdf', 'source': {'id': 'https://openalex.org/S31549366', 'display_name': 'Aquatic Microbial Ecology', 'issn_l': '0948-3055', 'issn': ['0948-3055', '1616-1564'], 'is_oa': False, 'is_in_doaj': False, 'is_core': True, 'host_organization': 'https://openalex.org/P4353060361', 'host_organization_name': 'Inter-Research Science Center', 'host_organization_lineage': ['https://openalex.org/P4353060361'], 'host_organization_lineage_names': ['Inter-Research Science Center'], 'type': 'journal'}, 'license': None, 'license_id': None, 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, 'type': 'article', 'type_crossref': 'journal-article', 'indexed_in': ['crossref'], 'open_access': {'is_oa': True, 'oa_status': 'bronze', 'oa_url': 'https://www.int-res.com/articles/ame_oa/a053p069.pdf', 'any_repository_has_fulltext': False}, 'authorships': [{'author_position': 'first', 'author': {'id': 'https://openalex.org/A5035958952', 'display_name': 'Jed A. Fuhrman', 'orcid': 'https://orcid.org/0000-0002-2361-1985'}, 'institutions': [{'id': 'https://openalex.org/I2800817003', 'display_name': 'Southern California University for Professional Studies', 'ror': 'https://ror.org/058zz0t50', 'country_code': 'US', 'type': 'education', 'lineage': ['https://openalex.org/I2800817003']}, {'id': 'https://openalex.org/I1174212', 'display_name': 'University of Southern California', 'ror': 'https://ror.org/03taz7m60', 'country_code': 'US', 'type': 'education', 'lineage': ['https://openalex.org/I1174212']}], 'countries': ['US'], 'is_corresponding': False, 'raw_author_name': 'JA Fuhrman', 'raw_affiliation_strings': ['University of Southern California'], 'affiliations': [{'raw_affiliation_string': 'University of Southern California', 'institution_ids': ['https://openalex.org/I2800817003', 'https://openalex.org/I1174212']}]}, {'author_position': 'last', 'author': {'id': 'https://openalex.org/A5015047609', 'display_name': 'Joshua A. Steele', 'orcid': 'https://orcid.org/0000-0001-8023-8956'}, 'institutions': [{'id': 'https://openalex.org/I1174212', 'display_name': 'University of Southern California', 'ror': 'https://ror.org/03taz7m60', 'country_code': 'US', 'type': 'education', 'lineage': ['https://openalex.org/I1174212']}], 'countries': ['US'], 'is_corresponding': False, 'raw_author_name': 'JA Steele', 'raw_affiliation_strings': ['Department of Biological Sciences and Wrigley Institute for Environmental Studies, University of Southern California, Los Angeles, California 90089-0371, USA'], 'affiliations': [{'raw_affiliation_string': 'Department of Biological Sciences and Wrigley Institute for Environmental Studies, University of Southern California, Los Angeles, California 90089-0371, USA', 'institution_ids': ['https://openalex.org/I1174212']}]}], 'institution_assertions': [], 'countries_distinct_count': 1, 'institutions_distinct_count': 2, 'corresponding_author_ids': [], 'corresponding_institution_ids': [], 'apc_list': None, 'apc_paid': None, 'fwci': 8.008, 'has_fulltext': True, 'fulltext_origin': 'pdf', 'cited_by_count': 210, 'citation_normalized_percentile': {'value': 0.999942, 'is_in_top_1_percent': True, 'is_in_top_10_percent': True}, 'cited_by_percentile_year': {'min': 98, 'max': 99}, 'biblio': {'volume': '53', 'issue': None, 'first_page': '69', 'last_page': '81'}, 'is_retracted': False, 'is_paratext': False, 'primary_topic': {'id': 'https://openalex.org/T11791', 'display_name': 'Microbial Community Ecology and Physiology', 'score': 0.9996, 'subfield': {'id': 'https://openalex.org/subfields/2303', 'display_name': 'Ecology'}, 'field': {'id': 'https://openalex.org/fields/23', 'display_name': 'Environmental Science'}, 'domain': {'id': 'https://openalex.org/domains/3', 'display_name': 'Physical Sciences'}}, 'topics': [{'id': 'https://openalex.org/T11791', 'display_name': 'Microbial Community Ecology and Physiology', 'score': 0.9996, 'subfield': {'id': 'https://openalex.org/subfields/2303', 'display_name': 'Ecology'}, 'field': {'id': 'https://openalex.org/fields/23', 'display_name': 'Environmental Science'}, 'domain': {'id': 'https://openalex.org/domains/3', 'display_name': 'Physical Sciences'}}, {'id': 'https://openalex.org/T12236', 'display_name': 'Photoreceptor and optogenetics research', 'score': 0.9962, 'subfield': {'id': 'https://openalex.org/subfields/2804', 'display_name': 'Cellular and Molecular Neuroscience'}, 'field': {'id': 'https://openalex.org/fields/28', 'display_name': 'Neuroscience'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}, {'id': 'https://openalex.org/T10032', 'display_name': 'Marine and coastal ecosystems', 'score': 0.9932, 'subfield': {'id': 'https://openalex.org/subfields/1910', 'display_name': 'Oceanography'}, 'field': {'id': 'https://openalex.org/fields/19', 'display_name': 'Earth and Planetary Sciences'}, 'domain': {'id': 'https://openalex.org/domains/3', 'display_name': 'Physical Sciences'}}], 'keywords': [{'id': 'https://openalex.org/keywords/bacterioplankton', 'display_name': 'Bacterioplankton', 'score': 0.6704309}, {'id': 'https://openalex.org/keywords/crenarchaeota', 'display_name': 'Crenarchaeota', 'score': 0.48983333}, {'id': 'https://openalex.org/keywords/autotroph', 'display_name': 'Autotroph', 'score': 0.432815}], 'concepts': [{'id': 'https://openalex.org/C18903297', 'wikidata': 'https://www.wikidata.org/wiki/Q7150', 'display_name': 'Ecology', 'level': 1, 'score': 0.68660444}, {'id': 'https://openalex.org/C172459030', 'wikidata': 'https://www.wikidata.org/wiki/Q671626', 'display_name': 'Bacterioplankton', 'level': 4, 'score': 0.6704309}, {'id': 'https://openalex.org/C133079900', 'wikidata': 'https://www.wikidata.org/wiki/Q5155065', 'display_name': 'Community structure', 'level': 2, 'score': 0.64827305}, {'id': 'https://openalex.org/C86803240', 'wikidata': 'https://www.wikidata.org/wiki/Q420', 'display_name': 'Biology', 'level': 0, 'score': 0.583118}, {'id': 'https://openalex.org/C69562835', 'wikidata': 'https://www.wikidata.org/wiki/Q3054637', 'display_name': 'Microbial ecology', 'level': 3, 'score': 0.5411931}, {'id': 'https://openalex.org/C2776353733', 'wikidata': 'https://www.wikidata.org/wiki/Q499078', 'display_name': 'Crenarchaeota', 'level': 4, 'score': 0.48983333}, {'id': 'https://openalex.org/C81407943', 'wikidata': 'https://www.wikidata.org/wiki/Q17149178', 'display_name': 'Microbial population biology', 'level': 3, 'score': 0.45316023}, {'id': 'https://openalex.org/C104647666', 'wikidata': 'https://www.wikidata.org/wiki/Q131427', 'display_name': 'Autotroph', 'level': 3, 'score': 0.432815}, {'id': 'https://openalex.org/C205649164', 'wikidata': 'https://www.wikidata.org/wiki/Q1071', 'display_name': 'Geography', 'level': 0, 'score': 0.33820114}, {'id': 'https://openalex.org/C193252679', 'wikidata': 'https://www.wikidata.org/wiki/Q242125', 'display_name': 'Phylogenetic tree', 'level': 3, 'score': 0.29855967}, {'id': 'https://openalex.org/C2780892065', 'wikidata': 'https://www.wikidata.org/wiki/Q184755', 'display_name': 'Phytoplankton', 'level': 3, 'score': 0.08949128}, {'id': 'https://openalex.org/C142796444', 'wikidata': 'https://www.wikidata.org/wiki/Q181394', 'display_name': 'Nutrient', 'level': 2, 'score': 0.0}, {'id': 'https://openalex.org/C55493867', 'wikidata': 'https://www.wikidata.org/wiki/Q7094', 'display_name': 'Biochemistry', 'level': 1, 'score': 0.0}, {'id': 'https://openalex.org/C54355233', 'wikidata': 'https://www.wikidata.org/wiki/Q7162', 'display_name': 'Genetics', 'level': 1, 'score': 0.0}, {'id': 'https://openalex.org/C523546767', 'wikidata': 'https://www.wikidata.org/wiki/Q10876', 'display_name': 'Bacteria', 'level': 2, 'score': 0.0}, {'id': 'https://openalex.org/C104317684', 'wikidata': 'https://www.wikidata.org/wiki/Q7187', 'display_name': 'Gene', 'level': 2, 'score': 0.0}], 'mesh': [], 'locations_count': 1, 'locations': [{'is_oa': True, 'landing_page_url': 'https://doi.org/10.3354/ame01222', 'pdf_url': 'https://www.int-res.com/articles/ame_oa/a053p069.pdf', 'source': {'id': 'https://openalex.org/S31549366', 'display_name': 'Aquatic Microbial Ecology', 'issn_l': '0948-3055', 'issn': ['0948-3055', '1616-1564'], 'is_oa': False, 'is_in_doaj': False, 'is_core': True, 'host_organization': 'https://openalex.org/P4353060361', 'host_organization_name': 'Inter-Research Science Center', 'host_organization_lineage': ['https://openalex.org/P4353060361'], 'host_organization_lineage_names': ['Inter-Research Science Center'], 'type': 'journal'}, 'license': None, 'license_id': None, 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}], 'best_oa_location': {'is_oa': True, 'landing_page_url': 'https://doi.org/10.3354/ame01222', 'pdf_url': 'https://www.int-res.com/articles/ame_oa/a053p069.pdf', 'source': {'id': 'https://openalex.org/S31549366', 'display_name': 'Aquatic Microbial Ecology', 'issn_l': '0948-3055', 'issn': ['0948-3055', '1616-1564'], 'is_oa': False, 'is_in_doaj': False, 'is_core': True, 'host_organization': 'https://openalex.org/P4353060361', 'host_organization_name': 'Inter-Research Science Center', 'host_organization_lineage': ['https://openalex.org/P4353060361'], 'host_organization_lineage_names': ['Inter-Research Science Center'], 'type': 'journal'}, 'license': None, 'license_id': None, 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, 'sustainable_development_goals': [{'display_name': 'Life below water', 'id': 'https://metadata.un.org/sdg/14', 'score': 0.82}], 'grants': [], 'datasets': [], 'versions': [], 'referenced_works_count': 62, 'referenced_works': ['https://openalex.org/W1515603326', 'https://openalex.org/W1552724685', 'https://openalex.org/W1585693796', 'https://openalex.org/W1967910721', 'https://openalex.org/W1977401972', 'https://openalex.org/W1980298106', 'https://openalex.org/W1981766601', 'https://openalex.org/W1991182484', 'https://openalex.org/W1997168629', 'https://openalex.org/W1997389755', 'https://openalex.org/W2008311494', 'https://openalex.org/W2014972500', 'https://openalex.org/W2019109067', 'https://openalex.org/W2019118459', 'https://openalex.org/W2019635271', 'https://openalex.org/W2025249484', 'https://openalex.org/W2028360015', 'https://openalex.org/W2030498531', 'https://openalex.org/W2033126926', 'https://openalex.org/W2038071748', 'https://openalex.org/W2059542809', 'https://openalex.org/W2065866056', 'https://openalex.org/W2066831210', 'https://openalex.org/W2072241820', 'https://openalex.org/W2072336276', 'https://openalex.org/W2075270138', 'https://openalex.org/W2093830129', 'https://openalex.org/W2094591409', 'https://openalex.org/W2095770697', 'https://openalex.org/W2098386120', 'https://openalex.org/W2101694541', 'https://openalex.org/W2103115373', 'https://openalex.org/W2103598788', 'https://openalex.org/W2105107664', 'https://openalex.org/W2110415094', 'https://openalex.org/W2113601822', 'https://openalex.org/W2115338073', 'https://openalex.org/W2124716475', 'https://openalex.org/W2129253452', 'https://openalex.org/W2129920902', 'https://openalex.org/W2133715097', 'https://openalex.org/W2135057795', 'https://openalex.org/W2135950518', 'https://openalex.org/W2137024419', 'https://openalex.org/W2137856266', 'https://openalex.org/W2146315904', 'https://openalex.org/W2146866283', 'https://openalex.org/W2148883325', 'https://openalex.org/W2154330214', 'https://openalex.org/W2155162332', 'https://openalex.org/W2155476274', 'https://openalex.org/W2161034675', 'https://openalex.org/W2163760674', 'https://openalex.org/W2165646945', 'https://openalex.org/W2166676205', 'https://openalex.org/W2169409681', 'https://openalex.org/W2171777099', 'https://openalex.org/W2173924792', 'https://openalex.org/W2462510465', 'https://openalex.org/W333695319', 'https://openalex.org/W4229696827', 'https://openalex.org/W4244820311'], 'related_works': ['https://openalex.org/W69600424', 'https://openalex.org/W3082529414', 'https://openalex.org/W2613630483', 'https://openalex.org/W2604106679', 'https://openalex.org/W2585439385', 'https://openalex.org/W2134018021', 'https://openalex.org/W2082412025', 'https://openalex.org/W2036101409', 'https://openalex.org/W2026706624', 'https://openalex.org/W1545708221'], 'abstract_inverted_index': {'AME': [0, 23, 29, 420], 'Aquatic': [1, 35], 'Microbial': [2, 36], 'Ecology': [3], 'Contact': [4], 'the': [5, 21, 40, 119, 142, 183, 244, 336], 'journal': [6], 'Facebook': [7, 411], 'Twitter': [8], 'RSS': [9, 409], 'Mailing': [10], 'List': [11], 'Subscribe': [12], 'to': [13, 56, 160, 166, 188, 218, 260, 271, 333, 400], 'our': [14], 'mailing': [15], 'list': [16], 'via': [17], 'Mailchimp': [18], 'HomeLatest': [19], 'VolumeAbout': [20], 'JournalEditorsSpecials': [22], '53:69-81': [24], '(2008)': [25, 390], '-': [26, 410, 412, 414], 'DOI:': [27], 'https://doi.org/10.3354/ame01222': [28, 406], 'Special:': [30], "'Progress": [31], 'and': [32, 54, 68, 98, 109, 137, 177, 202, 206, 268, 289, 342, 398], 'Perspectives': [33], 'in': [34, 88, 151, 173, 220, 379, 419], 'Ecology:': [37], 'Highlights': [38], 'of': [39, 49, 65, 75, 95, 107, 185, 225, 231, 296, 301, 318, 339, 393], 'SAME': [41], '10,': [42], 'Faro,': [43], 'Portugal,': [44], 'September': [45, 428], "2007'": [46], 'Community': [47, 192, 391], 'structure': [48, 97, 201, 392], 'marine': [50, 89, 120, 394], 'bacterioplankton:': [51, 395], 'patterns,': [52, 396], 'networks,': [53, 397], 'relationships': [55, 325, 399], 'function': [57], 'Jed': [58], 'A.': [59, 62], 'Fuhrman*,': [60], 'Joshua': [61], 'Steele': [63, 388], 'Department': [64], 'Biological': [66], 'Sciences': [67], 'Wrigley': [69], 'Institute': [70], 'for': [71, 114, 198, 203], 'Environmental': [72], 'Studies,': [73], 'University': [74], 'Southern': [76], 'California,': [77], 'Los': [78], 'Angeles,': [79], 'California': [80], '90089-0371,': [81], 'USA': [82], '*Email:': [83], '[email protected]': [84], 'ABSTRACT:': [85], 'Major': [86], 'challenges': [87], 'microbial': [90, 340], 'ecology': [91], 'include': [92], 'determining': [93], 'patterns': [94], 'community': [96, 200, 274], 'structure–function': [99], 'relationships.': [100], 'Progress': [101], 'has': [102], 'occurred': [103], 'by': [104, 417], 'a': [105, 162, 189, 195, 272, 299], 'combination': [106], 'molecular': [108], 'classical': [110], 'techniques.': [111], 'An': [112], 'example': [113], 'this': [115, 383], 'is': [116, 194], 'work': [117], 'on': [118], 'Crenarchaeota,': [121], 'extremely': [122], 'abundant': [123], 'organisms': [124, 167, 297, 311], 'that': [125, 147, 168, 214, 252, 351], 'we': [126, 212], 'now': [127], 'think': [128], 'play': [129], 'important': [130, 150], 'roles': [131], 'both': [132], 'as': [133, 138, 243, 329], 'autotrophic': [134], 'ammonium': [135], 'oxidizers': [136], 'heterotrophs.': [139], 'Another': [140], 'involves': [141], 'recently': [143], 'discovered': [144], 'Proteorhodopsins,': [145], 'pigments': [146], 'are': [148, 255, 312, 326], 'potentially': [149], 'solar': [152], 'energy': [153], 'capture,': [154], 'yet': [155], 'often': [156], 'do': [157], 'not': [158, 355], 'seem': [159], 'confer': [161], 'clear': [163], 'growth': [164], 'benefit': [165], 'possess': [169], 'them.': [170], 'Proteorhodopsins': [171], 'occur': [172, 219], 'numerous': [174], 'phylogenetic': [175, 359], 'groups': [176], 'may': [178], 'have': [179], 'multiple': [180], 'roles,': [181], 'complicating': [182], 'linking': [184], 'these': [186], 'proteins': [187], 'well-defined': [190], 'function.': [191, 401], 'fingerprinting': [193], 'powerful': [196], 'tool': [197], 'examining': [199, 204], 'spatial': [205], 'temporal': [207], 'distribution': [208], 'patterns.': [209], 'Using': [210], 'fingerprinting,': [211], 'found': [213], 'ocean': [215], 'communities': [216, 254, 277], 'tend': [217], 'patches': [221], 'with': [222], 'horizontal': [223], 'dimensions': [224], 'several': [226, 266], 'km,': [227], 'while': [228], 'samples': [229], '10s': [230], 'km': [232], 'or': [233, 306, 322], 'more': [234], 'apart': [235], 'can': [236, 278, 308], 'be': [237, 280], 'quite': [238], 'different.': [239], 'Temporal': [240], 'analyses': [241], 'such': [242], 'San': [245], 'Pedro': [246], 'Ocean': [247], 'Time': [248, 291, 373], 'Series': [249], '(SPOT)': [250], 'show': [251, 294, 309], 'near-surface': [253], 'somewhat': [256], 'similar': [257, 273], 'from': [258, 282], 'month': [259], 'month,': [261], 'then': [262], 'change': [263], 'significantly': [264, 313], 'over': [265], 'months,': [267], 'finally': [269], 'return': [270], 'annually.': [275], 'Near-surface': [276], 'also': [279], 'predicted': [281], 'environmental': [283], 'parameters': [284], 'like': [285], 'temperature,': [286], 'salinity,': [287], 'nutrients,': [288], 'chlorophyll.': [290], 'series': [292, 374], 'data': [293], 'co-occurrence': [295], '(resembling': [298], 'succession': [300], 'communities)': [302], 'under': [303], 'particular': [304], 'conditions,': [305], 'conversely': [307], 'which': [310], 'negatively': [314], 'correlated,': [315], 'indicative': [316], 'perhaps': [317], 'competition,': [319], 'resource': [320], 'partitioning,': [321], 'allelopathy.': [323], 'These': [324], 'visualized': [327], 'here': [328], 'mathematical': [330], 'interaction': [331], 'networks': [332], 'map': [334], 'out': [335], "'niche": [337], "space'": [338], 'taxa': [341], 'their': [343], 'correlations,': [344], 'displaying': [345], 'complex': [346], 'ecological': [347, 352], 'interactions.': [348], 'Observations': [349], 'indicate': [350], 'relatedness': [353], 'does': [354], 'necessarily': [356], 'closely': [357], 'follow': [358], 'relatedness.': [360], 'KEY': [361], 'WORDS:': [362], 'Bacteria': [363], '·': [364, 366, 368, 370, 372, 375], 'Archaea': [365], 'ARISA': [367], 'Proteorhodopsin': [369], 'Patchiness': [371], 'Networks': [376], 'Full': [377], 'text': [378], 'pdf': [380], 'format': [381], 'PreviousNextCite': [382], 'article': [384], 'as:': [385], 'Fuhrman': [386], 'JA,': [387], 'JA': [389], 'Aquat': [402], 'Microb': [403], 'Ecol': [404], '53:69-81.': [405], 'Export': [407], 'citation': [408], 'Tweet': [413], 'linkedIn': [415], 'Cited': [416], 'Published': [418], 'Vol.': [421], '53,': [422], 'No.': [423], '1.': [424], 'Online': [425, 434], 'publication': [426], 'date:': [427], '18,': [429], '2008': [430, 439], 'Print': [431], 'ISSN:': [432, 435], '0948-3055;': [433], '1616-1564': [436], 'Copyright': [437], '©': [438], 'Inter-Research.': [440]}, 'cited_by_api_url': 'https://api.openalex.org/works?filter=cites:W2048232989', 'counts_by_year': [{'year': 2024, 'cited_by_count': 7}, {'year': 2023, 'cited_by_count': 5}, {'year': 2022, 'cited_by_count': 8}, {'year': 2021, 'cited_by_count': 15}, {'year': 2020, 'cited_by_count': 17}, {'year': 2019, 'cited_by_count': 11}, {'year': 2018, 'cited_by_count': 17}, {'year': 2017, 'cited_by_count': 13}, {'year': 2016, 'cited_by_count': 21}, {'year': 2015, 'cited_by_count': 17}, {'year': 2014, 'cited_by_count': 14}, {'year': 2013, 'cited_by_count': 15}, {'year': 2012, 'cited_by_count': 19}], 'updated_date': '2025-01-05T08:55:33.036025', 'created_date': '2016-06-24'}