Publication Information

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'https://openalex.org/W75747297'], 'related_works': ['https://openalex.org/W4321018600', 'https://openalex.org/W2982267603', 'https://openalex.org/W2295147060', 'https://openalex.org/W2164218503', 'https://openalex.org/W2142201297', 'https://openalex.org/W2135526700', 'https://openalex.org/W2080278886', 'https://openalex.org/W2001221569', 'https://openalex.org/W1981429455', 'https://openalex.org/W1967518777'], 'abstract_inverted_index': {'The': [0, 231, 1956, 2324, 2410, 2506, 2529, 2585, 2851, 3306, 3515, 4300], 'composition': [1, 22, 232, 253, 1208, 1775, 3193, 3878, 4145, 4191], 'of': [2, 23, 41, 49, 58, 67, 80, 98, 118, 136, 140, 178, 193, 195, 218, 229, 233, 254, 272, 280, 289, 298, 311, 329, 349, 367, 371, 409, 424, 426, 449, 460, 470, 764, 782, 788, 816, 821, 868, 1108, 1197, 1209, 1286, 1557, 1562, 1581, 1612, 1623, 1654, 1668, 1676, 1684, 1708, 1729, 1776, 2019, 2213, 2245, 2253, 2268, 2422, 2461, 2538, 2579, 2709, 2728, 2743, 2753, 2759, 2801, 2807, 2827, 2870, 2880, 2919, 2955, 2960, 2994, 3084, 3142, 3146, 3163, 3175, 3233, 3280, 3308, 3362, 3388, 3448, 3453, 3469, 3472, 3491, 3499, 3522, 3535, 3624, 3633, 3649, 3669, 3723, 3854, 3865, 3909, 3964, 3974, 3980, 3997, 4019, 4030, 4035, 4044, 4094, 4209, 4227, 4237, 4260, 4322], 'chromatin-remodeling': [3, 234, 771, 817, 870], 'complexes': [4, 25, 235, 256, 818, 1272, 1360, 1493, 1569, 1633, 1686, 1756, 1778, 2165, 2722, 2786, 2985, 3335, 3390, 3443, 3464, 3794, 3899], 'dictates': [5, 236], 'how': [6, 237, 1773], 'these': [7, 59, 151, 238, 290, 382, 3776, 4238, 4298], 'enzymes': [8, 222, 239, 453, 775, 1614, 3783], 'control': [9, 240, 1584, 1921, 2602, 3516], 'transcriptional': [10, 241, 1674, 1703, 1780, 3789, 3800], 'programs': [11, 242], 'and': [12, 52, 90, 110, 121, 130, 139, 243, 283, 321, 341, 352, 361, 370, 476, 603, 715, 729, 735, 791, 1030, 1114, 1132, 1144, 1205, 1270, 1368, 1371, 1439, 1534, 1536, 1615, 1666, 1719, 1747, 1754, 1764, 1788, 1790, 1813, 1834, 1846, 1855, 1860, 1919, 1952, 1967, 2001, 2013, 2025, 2028, 2034, 2058, 2070, 2086, 2096, 2114, 2185, 2190, 2208, 2256, 2280, 2320, 2334, 2339, 2398, 2402, 2412, 2433, 2492, 2576, 2613, 2713, 2732, 2778, 2804, 2811, 2832, 2922, 2972, 2983, 3004, 3020, 3034, 3054, 3061, 3207, 3274, 3300, 3318, 3320, 3398, 3400, 3422, 3439, 3510, 3540, 3568, 3759, 3772, 3887, 3932, 3969, 3987, 3991, 4211, 4218, 4230, 4275], 'cellular': [13, 244, 1137, 4131], 'identity.': [14, 245], 'In': [15, 31, 246, 262, 3666], 'the': [16, 21, 56, 81, 145, 176, 196, 216, 247, 252, 287, 312, 376, 407, 427, 447, 468, 736, 741, 786, 1025, 1123, 1563, 1609, 1616, 1652, 1697, 1734, 1774, 1920, 2040, 2214, 2240, 2337, 2369, 2408, 2565, 2601, 2642, 2645, 2696, 2881, 2900, 2956, 3000, 3010, 3079, 3237, 3242, 3271, 3281, 3289, 3303, 3312, 3346, 3349, 3360, 3363, 3366, 3374, 3383, 3386, 3424, 3446, 3470, 3492, 3506, 3608, 3618, 3638, 3667, 3675, 3716, 3719, 3874, 3961, 3965, 3972, 4004, 4012, 4033, 4049, 4092, 4102, 4139, 4187, 4231, 4251, 4270], 'present': [17, 248, 2965], 'study': [18, 249], 'we': [19, 100, 174, 250, 331, 405, 1630, 1749, 2876, 2998, 3198, 3287, 3474, 3550, 3655, 3725, 3859, 3872, 3946, 3976, 4141, 4282, 4291, 4303], 'investigated': [20, 251, 1631, 2877], 'SWI/SNF': [24, 44, 70, 103, 155, 179, 190, 221, 255, 275, 301, 334, 386, 410, 421, 452, 1126, 1359, 1492, 1541, 1568, 1572, 1613, 1655, 1664, 1685, 1715, 1730, 1777, 2247, 2596, 2871, 2882, 2961, 2990, 3135, 3150, 3176, 3192, 3244, 3291, 3309, 3442, 3503, 3650, 3828, 3857, 3867, 3877, 3898, 3954, 4105, 4144, 4190], 'in': [26, 63, 87, 113, 159, 180, 199, 257, 294, 318, 344, 390, 411, 430, 467, 652, 826, 873, 1129, 1135, 1283, 1494, 1526, 1626, 1635, 1651, 1658, 1663, 1687, 1710, 1761, 1823, 1959, 2119, 2192, 2296, 2600, 2706, 2725, 2767, 2774, 2781, 2866, 2872, 2886, 2892, 2908, 2914, 2966, 3051, 3057, 3075, 3136, 3185, 3194, 3211, 3241, 3276, 3352, 3406, 3420, 3441, 3445, 3463, 3505, 3547, 3554, 3613, 3646, 3658, 3681, 3684, 3686, 3753, 3766, 3826, 3841, 3847, 3869, 3876, 4003, 4011, 4104, 4110, 4117, 4130, 4143, 4182, 4189, 4207, 4216, 4247, 4254, 4272, 4278, 4316, 4330], 'embryonic': [27, 258, 503, 528, 875, 1292, 1627], 'stem': [28, 259, 495, 504, 709, 1628, 3893], 'cells': [29, 260, 496, 659, 1689, 1712, 1799, 1804, 2116, 2703, 2737, 3033, 3056, 3153, 3894, 3904, 3939], '(ESCs).': [30, 261], 'contrast': [32, 263, 3754], 'to': [33, 168, 203, 264, 399, 434, 738, 784, 795, 1023, 1118, 1487, 1491, 1540, 1699, 1806, 2157, 2308, 2332, 2407, 2451, 2570, 2735, 2948, 2952, 3030, 3059, 3064, 3093, 3181, 3202, 3562, 3755, 3786, 3793, 3890, 3958, 4128, 4138], 'differentiated': [34, 91, 265, 322, 658], 'cells,': [35, 115, 266, 346, 1629, 1810, 1812, 3757, 3871], 'ESCs': [36, 89, 267, 320, 1659, 1793, 1995, 3217, 3421, 3659, 3685, 3767, 3827], 'have': [37, 268, 823, 1273, 1484], 'a': [38, 64, 77, 108, 141, 200, 269, 295, 308, 339, 372, 431, 464, 564, 731, 1206, 1527, 1575, 1646, 1681, 2209, 2283, 2374, 2379, 2383, 2399, 2419, 2452, 2473, 2482, 2514, 2523, 2535, 2559, 2577, 2626, 2649, 2842, 2890, 2909, 3070, 3143, 3159, 3230, 3369, 3520, 3835, 3848, 3861, 3906, 3935, 4001, 4036, 4245, 4331], 'biased': [39, 270, 3863], 'incorporation': [40, 271, 1556, 1667, 3440, 4119], 'certain': [42, 273, 3533], 'paralogous': [43, 274, 3536, 3639, 3661, 3866], 'subunits': [45, 60, 276, 291, 1355, 1431, 1482, 1518, 1625, 1644, 2597, 2895, 2947, 2977, 3177, 3283, 3292, 3329, 3528, 3537, 3573, 3640, 3662, 3777, 3868], 'with': [46, 277, 657, 1829, 1850, 2003, 2021, 2179, 2239, 2250, 2265, 2322, 2329, 2378, 2389, 2418, 2486, 2511, 2534, 2558, 2690, 2695, 2740, 2824, 2980, 3016, 3069, 3090, 3156, 3302, 3339, 3359, 3382, 3688, 3788, 3795, 3799, 3934], 'low': [47, 278, 1999, 3690], 'levels': [48, 279, 3187, 3460, 3963, 4133, 4198, 4229], 'BRM,': [50, 281, 1204, 1290], 'BAF170,': [51, 282, 2971, 3172, 3296, 3473, 3986], 'ARID1B.': [53, 284], 'Upon': [54, 285], 'differentiation,': [55, 286, 1142, 1694, 1841, 3975], 'expression': [57, 117, 288, 348, 473, 1862, 3050, 3174, 3279, 3426, 3438, 3691, 4197, 4208], 'increases,': [61, 292], 'resulting': [62, 293, 651, 2913], 'higher': [65, 296], 'diversity': [66, 297, 1683], 'compositionally': [68, 219, 299, 450, 2957, 3831], 'distinct': [69, 300, 814, 1119, 2958, 4096], 'enzymes.': [71, 302, 1656], 'We': [72, 187, 303, 418, 1723, 2888, 2942, 3046, 3343, 3628, 3882, 4177, 4201, 4242], 'also': [73, 304, 1483, 1724, 3047, 3715, 4243], 'identified': [74, 305, 1725, 4026], 'BRD7': [75, 138, 306, 369, 1746, 2087], 'as': [76, 106, 125, 307, 337, 356, 1140, 1277, 1520, 1531, 1574, 1891, 1969, 2222, 2344, 2625, 2668, 3644, 3791, 3911, 3984, 4108], 'novel': [78, 309, 1726], 'component': [79, 310], 'Polybromo-associated': [82, 313, 513, 1443], 'BRG1-associated': [83, 314, 510, 1210], 'factor': [84, 315, 1843, 3038], '(PBAF)': [85, 316, 1445], 'complex': [86, 198, 317, 429, 2884], 'both': [88, 107, 319, 338, 1717, 1752, 2981, 3451, 4273], 'cells.': [92, 323, 1637, 3077, 3653], 'Using': [93, 324, 1741, 3265], 'short': [94, 325, 521], 'hairpin': [95, 326, 522, 1922, 1954], 'RNA-mediated': [96, 327], 'depletion': [97, 328], 'BRG1,': [99, 330, 1287, 3295], 'showed': [101, 149, 332, 380, 1750, 3368], 'that': [102, 150, 189, 223, 333, 381, 420, 454, 569, 1356, 1522, 1641, 1648, 1690, 1714, 1751, 2644, 2962, 2978, 3094, 3345, 3385, 3416, 3423, 3557, 3657, 3674, 3775, 3797, 3825, 4125, 4134, 4294], 'can': [104, 335, 1716, 1757], 'function': [105, 217, 336, 448], 'repressor': [109, 340], 'an': [111, 342, 1742, 1870, 1878, 3182, 3195, 4009, 4265], 'activator': [112, 343], 'pluripotent': [114, 345, 1636, 1688, 1711, 3031, 3870, 3892], 'regulating': [116, 181, 347, 412, 1136], 'developmental': [119, 350, 827], 'modifiers': [120, 351], 'signaling': [122, 353], 'components': [123, 194, 354, 425, 871, 1107, 1728, 3504, 3967], 'such': [124, 355, 1139, 1530, 3983, 4107], 'Nodal,': [126, 357], 'ADAMTS1,': [127, 358], 'BMI-1,': [128, 359], 'CRABP1,': [129, 360], 'thyroid': [131, 362, 557], 'releasing': [132, 363, 558], 'hormone.': [133, 364], 'Knockdown': [134, 365], 'studies': [135, 366], 'PBAF-specific': [137, 368, 1735], 'signature': [142, 373], 'subunit': [143, 374, 3238, 4111, 4118, 4183], 'within': [144, 375, 3641], 'BAF': [146, 377, 1354, 1444, 1447, 1643, 1753, 2982, 3341, 3782], 'complex,': [147, 378], 'ARID1A,': [148, 379, 1748, 3293, 3773], 'two': [152, 383, 1198, 2580, 2765, 2772, 2779, 3526], 'subcomplexes': [153, 384], 'affect': [154, 385], 'target': [156, 183, 387, 414, 1721, 1784], 'genes': [157, 184, 388, 415, 1585], 'differentially,': [158, 389], 'some': [160, 391, 820, 1517, 3981], 'cases': [161, 392], 'even': [162, 393], 'antagonistically.': [163, 394], 'This': [164, 395, 703, 1679, 3379, 3713, 4223], 'may': [165, 396, 2963, 4047], 'be': [166, 397, 2571, 2964, 3065, 3559, 3830, 4099], 'due': [167, 398], 'their': [169, 225, 400, 456, 1677, 1814, 3642, 3769, 4194], 'different': [170, 401, 1275, 3527, 4306], 'biochemical': [171, 402], 'properties.': [172, 403], 'Finally': [173, 404], 'examined': [175, 406, 3323, 3376, 3873], 'role': [177, 408, 466], 'its': [182, 413, 1624, 3428, 3436, 3454, 3689], 'during': [185, 416, 474, 3692, 3879], 'differentiation.': [186, 417, 3881, 3998, 4261], 'found': [188, 419, 3062, 3656], 'affects': [191, 422], 'recruitment': [192, 423], 'preinitiation': [197, 428, 561], 'promoter-specific': [201, 432], 'manner': [202, 433], 'modulate': [204, 435, 785], 'transcription': [205, 436, 536, 655, 711, 789, 2821, 4184], 'positively': [206, 437], 'or': [207, 438, 780, 1203, 1578, 1946, 2038, 2573, 2594, 2658, 2748, 2750, 3040, 3168, 3225, 3227, 3450, 3626, 4041, 4115], 'negatively.': [208, 439], 'Taken': [209, 440], 'together,': [210, 441], 'our': [211, 442, 1767, 2950, 3555, 3614, 3647, 3671, 4225], 'results': [212, 443, 872, 1639, 1768, 2531, 3672], 'provide': [213, 444], 'insight': [214, 445], 'into': [215, 446, 740, 1567, 1772, 2899, 3086, 3333, 3895], 'diverse': [220, 451, 1610], 'underlie': [224, 455], 'inherent': [226, 457], 'gene-specific': [227, 458, 1762], 'mode': [228, 459], 'action.': [230, 461], 'Chromatin': [462, 2664], 'plays': [463], 'key': [465], 'regulation': [469, 717, 1781], 'tissue-specific': [471], 'gene': [472, 1116, 1280, 3049], 'development': [475, 3694], 'differentiation': [477, 1031, 4126], '(1Muller': [478], 'C.': [479, 671, 904, 941, 943, 967, 1084, 1166, 1248, 1302, 1337, 1341, 1408, 1543, 2226, 2495, 3587, 4066, 4155], 'Leutz': [480], 'A.': [481, 621, 629, 887, 908, 935, 1009, 1220, 1306, 1339, 1380, 1592, 1908, 2348, 2681, 3739, 3808], 'Curr.': [482, 852], 'Opin.': [483, 853], 'Genet.': [484, 839, 854, 1156], 'Dev.': [485, 588, 855, 1226, 1386, 2933, 3704, 3743, 3923], '2001;': [486, 983, 3705], '11:': [487], '167-174Crossref': [488], 'PubMed': [489, 598, 645, 698, 724, 757, 808, 843, 859, 891, 929, 951, 986, 1013, 1047, 1070, 1101, 1160, 1173, 1188, 1230, 1264, 1327, 1349, 1390, 1424, 1475, 1511, 1550, 1603, 1912, 1941, 1983, 2234, 2363, 2553, 2685, 2937, 3127, 3260, 3603, 3708, 3747, 3819, 3927, 4082, 4172], 'Scopus': [490, 599, 646, 699, 725, 758, 809, 844, 860, 892, 930, 952, 987, 1014, 1048, 1071, 1102, 1161, 1174, 1189, 1231, 1265, 1328, 1350, 1391, 1425, 1476, 1512, 1551, 1604, 1913, 1942, 1984, 2235, 2364, 2554, 2686, 2938, 3128, 3261, 3604, 3709, 3748, 3820, 3928, 4083, 4173], '(108)': [491], 'Google': [492, 601, 648, 701, 727, 760, 811, 846, 862, 894, 932, 954, 989, 1016, 1050, 1073, 1104, 1163, 1176, 1191, 1233, 1267, 1330, 1352, 1393, 1427, 1478, 1514, 1553, 1606, 1915, 1944, 1986, 2237, 2366, 2556, 2688, 2940, 3130, 3263, 3606, 3711, 3750, 3822, 3930, 4085, 4175], 'Scholar).': [493, 702, 761, 812, 863, 1017, 1105, 1192, 1268, 1353, 1428, 1479, 1515, 1554, 1607, 1987, 2367, 2941, 3264, 3712, 3751, 4086, 4176], 'Embryonic': [494, 3137], '(ESCs)': [497], '2The': [498], 'abbreviations': [499], 'used': [500, 2889, 3883], 'are:': [501], 'ESC,': [502], 'cell;': [505], 'RA,': [506], 'retinoic': [507, 1838], 'acid;': [508], 'BAF,': [509], 'factor;': [511, 537], 'PBAF,': [512], 'BAF;': [514], 'MudPIT,': [515], 'multidimensional': [516], 'protein': [517, 550, 554, 1565, 1737, 2112, 2164, 2519, 2583, 2590, 2618, 2631, 2761, 2917, 3186, 3677, 4113, 4132, 4228], 'identification': [518, 2591, 3622], 'technique;': [519], 'shRNA,': [520], 'RNA;': [523], 'RNAi,': [524], 'RNA': [525, 539, 2059, 2809, 2814, 4196], 'interference;': [526], 'ES,': [527], 'stem;': [529], 'HA,': [530], 'hemagglutinin;': [531], 'ChIP,': [532, 2039], 'chromatin': [533, 567, 704, 713, 1109, 2150], 'immunoprecipitation;': [534, 543], 'TF,': [535], 'POLII,': [538], 'polymerase': [540, 2060, 2835], 'II;': [541], 'IP,': [542], 'MS,': [544], 'mass': [545, 2477, 2525, 2527, 3268, 4279], 'spectrometry;': [546], 'BCL7,': [547], 'B-cell': [548, 4334], 'leukemia': [549], '7;': [551, 555], 'BRD7,': [552, 1951], 'bromodomain-containing': [553, 1736], 'TRH,': [556], 'hormone;': [559], 'PIC,': [560], 'complex.': [562], 'possess': [563], 'distinctive': [565], 'global': [566, 654], 'structure': [568, 705], 'is': [570, 706, 730, 1133, 1291, 1649, 1671, 1691, 1961, 2592, 2635, 2641, 2648, 2905, 3380, 3418, 3714], 'characterized': [571, 2946], 'by': [572, 708, 1279, 1452, 1673, 1877, 2017, 2147, 2154, 2276, 2502, 2693, 3014, 3204, 3324, 3336, 3487, 3494, 3994, 4192, 4257, 4269, 4287, 4305, 4310], 'hyperdynamic': [573], 'architectural': [574], 'proteins': [575, 794, 1670, 2151], '(2Meshorer': [576], 'E.': [577, 581, 686, 746, 1597, 3702, 3813], 'Yellajoshula': [578], 'D.': [579, 901, 912, 965, 1299, 1310, 1460], 'George': [580], 'Scambler': [582], 'P.J.': [583], 'Brown': [584], 'D.T.': [585], 'Misteli': [586, 683, 747], 'T.': [587, 684, 748, 878, 899, 918, 1297, 1316, 1930, 2350], 'Cell.': [589, 636, 689, 920, 981, 1038, 1168, 1318, 1470, 1506, 1545, 3119], '2006;': [590, 637, 754, 840, 856, 1067, 1157, 1170, 1547, 1938, 1980], '10:': [591, 1228, 1388], '105-116Abstract': [592], 'Full': [593, 595, 640, 642, 693, 695, 924, 926, 1042, 1044, 1322, 1324, 3124], 'Text': [594, 596, 641, 643, 694, 696, 925, 927, 1043, 1045, 1323, 1325, 3125], 'PDF': [597, 644, 697, 928, 1046, 1326, 3126], '(820)': [600], 'Scholar)': [602, 728, 1916, 1945, 2238, 2557, 2689, 3131, 3931], 'bivalent': [604], 'domains': [605], '(3Bernstein': [606], 'B.E.': [607], 'Mikkelsen': [608], 'T.S.': [609], 'Xie': [610], 'X.': [611, 992, 1590, 3806], 'Kamal': [612], 'M.': [613, 623, 945, 1254, 1343, 1414, 1595, 1899, 3593, 3811, 4072], 'Huebert': [614], 'D.J.': [615, 669], 'Cuff': [616], 'J.': [617, 665, 906, 939, 1059, 1167, 1238, 1260, 1304, 1335, 1345, 1398, 1420, 1544, 1599, 2547, 3102, 3106, 3114, 3117, 3577, 3599, 3815, 4056, 4078], 'Fry': [618], 'B.': [619, 1037, 1063, 3110], 'Meissner': [620], 'Wernig': [622], 'Plath': [624], 'K.': [625, 1053, 1088, 4159], 'Jaenisch': [626], 'R.': [627, 631, 663, 998, 1057, 1090, 4161], 'Wagschal': [628], 'Feil': [630], 'Schreiber': [632], 'S.L.': [633], 'Lander': [634], 'E.S.': [635], '125:': [638], '315-326Abstract': [639], '(4106)': [647], 'Scholar),': [649, 3607, 3823], 'ultimately': [650], 'elevated': [653], 'compared': [656, 3048, 3933], '(4Efroni': [660], 'S.': [661, 676, 886, 897, 1008, 1218, 1242, 1295, 1378, 1402, 1462, 1907, 2680, 2925, 3581, 3696, 3915, 4060], 'Duttagupta': [662], 'Cheng': [664], 'Dehghani': [666], 'H.': [667, 719, 961, 971, 973, 3247], 'Hoeppner': [668], 'Dash': [670], 'Bazett-Jones': [672], 'D.P.': [673], 'Le': [674], 'Grice': [675], 'McKay': [677], 'R.D.': [678, 2674], 'Buetow': [679], 'K.H.': [680], 'Gingeras': [681], 'T.R.': [682], 'Meshorer': [685], 'Cell': [687, 752, 1065, 1786, 2010], 'Stem': [688, 1095, 3138, 4166], '2008;': [690, 1010, 1039, 1098, 4169], '2:': [691], '437-447Abstract': [692], '(508)': [700], 'dictated': [707], 'cell-specific': [710], 'factors,': [712], 'architecture,': [714], 'epigenetic': [716], '(5Niwa': [718], 'Development.': [720], '2007;': [721, 1508, 1600, 2360, 3816], '134:': [722, 1040], '635-646Crossref': [723], '(663)': [726], 'prerequisite': [732], 'for': [733, 1618, 1745, 1917, 2007, 2589, 2629, 2792, 3171, 3348, 3718, 3834, 3885, 4101, 4312], 'self-renewal': [734, 1029], 'capacity': [737], 'differentiate': [739, 3035, 3891], 'three': [742], 'germ': [743], 'layers': [744], '(6Meshorer': [745], 'Nat.': [749, 837, 1064, 1154, 1978], 'Rev.': [750, 803, 838, 1155], 'Mol.': [751, 919, 980, 1317, 1469, 1505, 3118], 'Biol.': [753, 982, 1066, 1471, 1507], '7:': [755, 841, 1158], '540-546Crossref': [756], '(558)': [759], 'Important': [762], 'determinants': [763], 'this': [765, 2446, 3478, 4020, 4286], 'unique': [766, 3337, 3497, 3610, 4276], 'genomic': [767, 866, 2269], 'plasticity': [768], 'are': [769, 1021, 1450, 1523, 1864, 1875, 1883, 2620, 2864, 2896, 2974, 3461, 3570, 3778, 4135, 4314], 'ATP-dependent': [770], 'complexes.': [772, 1120], 'These': [773], 'multisubunit': [774, 2883, 2916], 'catalyze': [776], 'non-covalent': [777], 'eviction,': [778], 'restructuring': [779], 'repositioning': [781], 'nucleosomes': [783], 'accessibility': [787], 'factors': [790, 1211], 'other': [792, 3340, 3375], 'regulatory': [793], 'chromosomal': [796], 'DNA': [797, 2261, 2795], '(7Becker': [798], 'P.B.': [799], 'Horz': [800], 'W.': [801, 1092, 1214, 1236, 1374, 1396, 1468, 1926, 3575, 3735, 4054, 4163], 'Annu.': [802], 'Biochem.': [804], '2002;': [805, 2550, 2682, 3744], '71:': [806], '247-273Crossref': [807], '(625)': [810], 'Multiple': [813], 'families': [815], 'exist,': [819], 'which': [822, 1284, 1449, 1632, 1868, 2878, 2893, 3235, 3724, 4046], 'been': [824, 1485], 'implicated': [825, 1134], 'processes': [828, 1138], '(8de': [829, 1146], 'la': [830, 1147], 'Serna': [831, 1148], 'I.L.': [832, 1149], 'Ohkawa': [833, 1150], 'Y.': [834, 1086, 1151, 1216, 1240, 1376, 1400, 1458, 3579, 3737, 4058, 4157], 'Imbalzano': [835, 1152, 3248], 'A.N.': [836, 1153, 3249], '461-473Crossref': [842, 1159], '(313)': [845, 1162], 'Scholar,': [847, 895, 933, 955, 990, 1051, 1074, 1164, 1177, 1234, 1331, 1394], '9Kaeser': [848], 'M.D.': [849, 2672], 'Emerson': [850], 'B.M.': [851], '16:': [857, 3745], '508-512Crossref': [858], '(13)': [861], 'For': [864, 1121, 1837, 2111], 'example,': [865, 1122], 'disruption': [867, 2146], 'specific': [869, 1538, 1660, 3564, 3660, 4039], 'early': [874, 3693], 'lethality': [876], '(10Stopka': [877], 'Skoultchi': [879], 'A.I.': [880], 'Proc.': [881, 1003, 1902, 2675], 'Natl.': [882, 1004, 1903, 2676], 'Acad.': [883, 1005, 1904, 2677], 'Sci.': [884, 1006, 1905, 2678], 'U.': [885, 1007, 1906, 2679], '2003;': [888, 1909], '100:': [889, 1910], '14097-14102Crossref': [890], '(164)': [893], '11Bultman': [896], 'Gebuhr': [898, 1296], 'Yee': [900, 1298], 'La': [902, 1300], 'Mantia': [903, 1301], 'Nicholson': [905, 1303], 'Gilliam': [907, 1305], 'Randazzo': [909, 1307], 'F.': [910, 1308], 'Metzger': [911, 1309], 'Chambon': [913, 1311], 'P.': [914, 994, 996, 1312], 'Crabtree': [915, 1223, 1257, 1313, 1383, 1417, 3596, 3740, 4075], 'G.': [916, 1314, 1895, 1973, 3100, 3108], 'Magnuson': [917, 1315], '2000;': [921, 948, 1319, 1472], '6:': [922, 1320], '1287-1295Abstract': [923, 1321], '(683)': [931, 1329], '12Klochendler-Yeivin': [934], 'Fiette': [936], 'L.': [937, 1080, 1179, 1499, 4151], 'Barra': [938, 1334], 'Muchardt': [940, 1247, 1336, 1407, 3586, 4065], 'Babinet': [942, 1340], 'Yaniv': [944, 1253, 1342, 1413, 3592, 4071], 'EMBO': [946, 1259, 1344, 1419, 1598, 3598, 3814, 4077], 'Rep.': [947], '1:': [949, 1981, 2551], '500-506Crossref': [950], '(339)': [953], '13Kim': [956], 'J.K.': [957], 'Huh': [958], 'S.O.': [959], 'Choi': [960], 'Lee': [962, 966, 974], 'K.S.': [963], 'Shin': [964], 'Nam': [968], 'J.S.': [969], 'Kim': [970], 'Chung': [972], 'H.W.': [975], 'Park': [976], 'S.D.': [977], 'Seong': [978], 'R.H.': [979], '21:': [984], '7787-7795Crossref': [985], '(170)': [988], '14Gao': [991], 'Tate': [993], 'Hu': [995], 'Tjian': [997], 'Skarnes': [999], 'W.C.': [1000], 'Wang': [1001, 1077, 1091, 1467, 1589, 3734, 3805, 4148, 4162], 'Z.': [1002, 1076, 1078, 1456, 4147, 4149], '105:': [1011], '6656-6661Crossref': [1012], '(270)': [1015], 'Other': [1018], 'remodeling': [1019], 'modules': [1020], 'required': [1022], 'maintain': [1024], 'balance': [1026], 'between': [1027, 3373], 'ESC': [1028, 2901, 3012, 3509, 3880], '(15Fazzio': [1032], 'T.G.': [1033], 'Huff': [1034], 'J.T.': [1035], 'Panning': [1036], '162-174Abstract': [1041], '(349)': [1049], '16Kaji': [1052], 'Caballero': [1054], 'I.M.': [1055, 1901, 1934, 1977], 'MacLeod': [1056], 'Nichols': [1058], 'Wilson': [1060], 'V.A.': [1061], 'Hendrich': [1062], '8:': [1068], '285-292Crossref': [1069], '(299)': [1072], '17Yan': [1075], 'Sharova': [1079, 4150], 'Sharov': [1081, 4152], 'A.A.': [1082, 4153], 'Ling': [1083, 4154], 'Piao': [1085, 4156], 'Aiba': [1087, 4158], 'Matoba': [1089, 4160], 'Ko': [1093, 4164], 'M.S.': [1094, 4165], 'Cells': [1096, 3139, 4167], '(Dayton).': [1097, 4168], '26:': [1099, 1601, 3817, 4170], '1155-1165Crossref': [1100, 4171], '(139)': [1103, 4174], 'Specific': [1106, 3488], 'remodelers': [1110], 'confer': [1111, 1488], 'specialized': [1112, 1489], 'activities': [1113, 1490], 'selective': [1115], 'targeting': [1117, 1923], 'evolutionarily': [1124], 'conserved': [1125], 'family': [1127, 1566], 'exists': [1128], 'several': [1130, 1642, 2944], 'subgroups': [1131], 'transcription,': [1141, 4112], 'development,': [1143], 'tumorigenesis': [1145], '18Simone': [1165], 'Physiol.': [1169, 1546], '207:': [1171, 1548], '309-314Crossref': [1172, 1549], '(83)': [1175, 1552], '19Mohrmann': [1178], 'Verrijzer': [1180, 1503], 'C.P.': [1181, 1504], 'Biochim.': [1182], 'Biophys.': [1183], 'Acta.': [1184], '2005;': [1185], '1681:': [1186], '59-73Crossref': [1187], '(276)': [1190], 'Each': [1193, 2496, 3953], 'subgroup': [1194], 'contains': [1195], 'one': [1196, 3449, 3563], 'highly': [1199], 'homologous': [1200], 'ATPases,': [1201], 'BRG1': [1202, 1709, 1918, 1960, 2045, 2610, 2973, 3228, 3569, 3615], 'variable': [1207], '(BAFs)': [1212], '(20Wang': [1213, 1373], 'Xue': [1215, 1239, 1375, 1399, 1457, 3578, 3736, 4057], 'Zhou': [1217, 1241, 1377, 1401, 1461, 3580, 4059], 'Kuo': [1219, 1379, 3738], 'Cairns': [1221, 1381], 'B.R.': [1222, 1382], 'G.R.': [1224, 1258, 1384, 1418, 3597, 3741, 4076], 'Genes': [1225, 1385, 2932, 3742, 3922], '1996;': [1227, 1261, 1387, 1421, 3600, 4079], '2117-2130Crossref': [1229, 1389], '(573)': [1232, 1392], '21Wang': [1235, 1395], 'Cote': [1237, 1397, 3576, 4055], 'Khavari': [1243, 1403, 3250, 3582, 4061], 'P.A.': [1244, 1404, 3251, 3583, 4062], 'Biggar': [1245, 1405, 3584, 4063], 'S.R.': [1246, 1406, 3585, 4064], 'Kalpana': [1249, 1409, 3588, 4067], 'G.V.': [1250, 1410, 3589, 4068], 'Goff': [1251, 1411, 3590, 4069], 'S.P.': [1252, 1412, 3591, 4070], 'Workman': [1255, 1415, 3594, 4073], 'J.L.': [1256, 1416, 3595, 4074], '15:': [1262, 1422, 3601, 4080], '5370-5382Crossref': [1263, 1423, 3602, 4081], '(686)': [1266, 1426, 3605, 4084], 'BRG1-': [1269], 'BRM-SWI/SNF': [1271], 'very': [1274, 3066, 4136], 'functions': [1276, 1539, 1573], 'shown': [1278, 1486, 2854, 3210, 3785, 4123], 'knock-out': [1281], 'experiments': [1282], 'loss': [1285], 'but': [1288, 1620, 4008], 'not': [1289, 1621, 3133, 3179, 3476, 3727, 4284], 'lethal': [1293], '(11Bultman': [1294], '22Reyes': [1332], 'J.C.': [1333], 'Camus': [1338], '1998;': [1346, 2934, 3924], '17:': [1347], '6979-6991Crossref': [1348], '(375)': [1351], 'constitute': [1357], '“core”': [1358], 'include': [1361], 'BAFs': [1362, 3221, 3315, 3395], '170,': [1363], '155,': [1364, 3224], '60,': [1365], '57,': [1366, 3223, 3317, 3397], '53,': [1367], '47': [1369], '(SNF5/INI1)': [1370], 'actin': [1372], 'Additionally': [1429, 3078], '“specificity”': [1430], 'like': [1432], 'ARID2': [1433, 3990], '(AT-rich': [1434], 'interactive': [1435], 'domain': [1436], '2,': [1437], 'BAF200)': [1438], 'Polybromo': [1440], '(BAF180)': [1441], 'distinguish': [1442], 'from': [1446, 1796, 1948, 2064, 2073, 2080, 2084, 2089, 2101, 2107, 2431, 2439, 2622, 2858, 2991, 3009, 3216, 3525, 3651, 3902, 3937, 4234], 'complexes,': [1448, 1665, 1731, 3151], 'specified': [1451], 'ARID1': [1453, 1564], '(BAF250)': [1454], '(23Nie': [1455], 'Yang': [1459], 'Deroo': [1463], 'B.J.': [1464], 'Archer': [1465], 'T.K.': [1466], '20:': [1473], '8879-8888Crossref': [1474], '(245)': [1477], 'Orthologous': [1480], '“signature”': [1481], 'Drosophila': [1495], '(24Moshkin': [1496], 'Y.M.': [1497], 'Mohrmann': [1498], 'van': [1500], 'Ijcken': [1501], 'W.F.': [1502], '27:': [1509], '651-661Crossref': [1510], '(105)': [1513], 'Interestingly': [1516, 1555, 4262], 'exist': [1519, 1634, 2885, 3680], 'paralogues': [1521, 1561, 1661], 'differentially': [1524], 'expressed': [1525, 1876, 2943], 'tissue-restricted': [1528], 'manner,': [1529, 3197], 'BAF60A,': [1532], '-B,': [1533], '-C,': [1535], 'impart': [1537], '(18Simone': [1542], 'distinct,': [1558], 'mutually': [1559, 3571], 'exclusive': [1560, 3572], 'determines': [1570], 'whether': [1571, 3327, 4180], 'corepressor': [1576], '(ARID1A)': [1577], 'coactivator': [1579], '(ARID1B)': [1580], 'cell': [1582, 1992, 3001, 3024], 'cycle': [1583], '(25Nagl': [1586, 3802], 'Jr.,': [1587, 3803], 'N.G.': [1588, 3804], 'Patsialou': [1591, 3807], 'Van': [1593, 3809], 'Scoy': [1594, 3810], 'Moran': [1596, 3812], '752-763Crossref': [1602, 3818], '(196)': [1605, 3821], 'Given': [1608], 'nature': [1611], 'requirement': [1617], 'some,': [1619], 'all,': [1622], 'Our': [1638, 1705], 'indicate': [1640, 2656], 'form': [1645], 'core': [1647, 2976, 3377, 3966], 'contained': [1650, 3229, 3519], 'majority': [1653, 3387], 'Surprisingly': [1657], 'predominate': [1662], 'related': [1669], 'restricted': [1672, 3896], 'repression': [1675, 1763], 'genes.': [1678, 1722, 1785], 'indicates': [1680], 'reduced': [1682], 'reversed': [1692], 'upon': [1693, 1885, 3036, 3278], 'probably': [1695], 'reflecting': [1696], 'need': [1698], 'regulate': [1700], 'more': [1701], 'intricate': [1702], 'programs.': [1704], 'functional': [1706], 'analysis': [1707, 2469, 3556, 3648, 4236], 'revealed': [1713, 3496, 4268], 'repress': [1718], 'activate': [1720], 'stoichiometric': [1727], 'among': [1732], 'them': [1733, 3063], '7': [1738, 2008, 4337], '(BRD7)': [1739], 'protein.': [1740], 'RNAi-based': [1743], 'approach': [1744], 'PBAF': [1755, 2984], 'play': [1758], 'important': [1759], 'roles': [1760], 'activation.': [1765], 'Overall': [1766], 'add': [1769], 'new': [1770, 3849, 4332], 'insights': [1771], 'imposes': [1779], 'on': [1782, 1802, 1818, 1866, 2472, 2756, 2841, 3270], 'individual': [1783, 3219, 3272, 4028, 4195], 'Culture': [1787], 'Differentiation—293T': [1789], 'R1': [1791, 2020, 3011, 3053], 'mouse': [1792, 2515], 'were': [1794, 1800, 1816, 1889, 1965, 1996, 2015, 2043, 2098, 2117, 2152, 2166, 2175, 2219, 2248, 2274, 2294, 2327, 2371, 2509, 2532, 2598, 2704, 2723, 2787, 3007, 3154, 3330, 3663, 3784, 3900, 4221], 'obtained': [1795, 4233], 'ATCC.': [1797], 'ES': [1798, 2874, 3032, 3842], 'cultivated': [1801], 'feeder': [1803], 'according': [1805], 'ATCC': [1807], 'guidelines.': [1808], 'R201': [1809, 2012, 3003, 3152], 'R218': [1811, 2014, 3055, 3076, 3080], 'derivatives': [1815], 'maintained': [1817], 'gelatinized': [1819], 'tissue': [1820], 'culture': [1821], 'dishes': [1822], "Dulbecco's": [1824], 'modified': [1825, 2536], "Eagle's": [1826], 'medium': [1827, 1847], 'supplied': [1828, 1849], '15%': [1830], 'fetal': [1831], 'bovine': [1832], 'serum': [1833], 'leukemia-inhibitory': [1835, 1842, 3037], 'factor.': [1836], 'acid': [1839, 1854, 2331], '(RA)': [1840], 'was': [1844, 1848, 2106, 2263, 2416, 2449, 2470, 2500, 2666, 2738, 2796, 2815, 2822, 2839, 3082, 3351, 3403, 3412, 3956, 4122], 'omitted,': [1845], '1': [1851, 2140, 2312], 'μm': [1852], 'all-trans-retinoic': [1853], 'changed': [1856], 'daily.': [1857], 'Lentiviral': [1858, 1887, 1963], 'Production': [1859], 'Infection—Lentiviral': [1861], 'vectors': [1863], 'based': [1865], 'pWPT-GFP,': [1867], 'contain': [1869, 3391], 'SV40-puro': [1871], 'cassette.': [1872], 'All': [1873], 'transgenes': [1874], 'EF1α': [1879], 'promoter.': [1880], 'Detailed': [1881], 'maps': [1882], 'available': [1884], 'request.': [1886], 'shRNAs': [1888], 'constructed': [1890], 'described': [1892, 1970, 2223, 2345, 2669, 2692, 3912], 'previously': [1893, 1971, 2224, 2346, 2670, 3096, 3501, 3913, 4050, 4124, 4323], '(26Tiscornia': [1894], 'Singer': [1896, 1931, 1974], 'O.': [1897, 1932, 1975], 'Ikawa': [1898], 'Verma': [1900, 1933, 1976], '1844-1848Crossref': [1911], '(500)': [1914], 'GLUT4': [1924], '(27Liao': [1925], 'Nguyen': [1927], 'M.T.': [1928], 'Imamura': [1929], 'Olefsky': [1935], 'J.M.': [1936], 'Endocrinology.': [1937], '147:': [1939], '2245-2252Crossref': [1940], '(54)': [1943], 'purchased': [1947], 'Sigma': [1949], '(ARID1A,': [1950], 'scrambled': [1953], 'control).': [1955], 'targeted': [1957], 'sequence': [1958, 3544], 'AAGCACCAGGAGTACCTCAAC.': [1962], 'particles': [1964], 'produced': [1966], 'concentrated': [1968], '(28Tiscornia': [1972], 'Protoc.': [1979], '241-245Crossref': [1982], '(729)': [1985], 'To': [1988, 2988, 3190, 3942], 'establish': [1989], 'stably': [1990], 'expressing': [1991, 2023, 3018, 3158, 3218], 'lines,': [1993], '105': [1994], 'infected': [1997], 'at': [1998, 2258, 2489, 2564, 2789, 4014, 4023, 4091], 'multiplicity': [2000], 'selected': [2002], 'puromycin': [2004], '(0.25': [2005], 'mg/liter)': [2006], 'days.': [2009], 'lines': [2011, 3002, 3025], 'derived': [2016, 2621, 3008], 'infection': [2018, 3015], 'viruses': [2022], 'Nanog-HA': [2024, 3019], 'Nanog-MYC,': [2026, 3021], 'respectively,': [2027], 'single': [2029, 3609], 'cell-cloned.': [2030], 'Antibodies,': [2031], 'Protein': [2032, 2286, 2517, 4336], 'Purification,': [2033], 'ATPase': [2035, 2217], 'Assay—For': [2036], 'immunodetection': [2037], 'following': [2041, 2241, 2697], 'antibodies': [2042, 4293], 'used:': [2044], '(G7),': [2046], 'BAF155': [2047, 3459, 3771, 3999], '(H76),': [2048], 'BAF170': [2049, 3364, 3402, 3758], '(H116),': [2050], 'HA': [2051], 'probe': [2052, 2078], '(F9),': [2053], 'TFIIB': [2054], '(C-18),': [2055], 'TFIID': [2056], '(N-12),': [2057], 'II': [2061], '(POLII)': [2062], '(H-224)': [2063], 'Santa': [2065], 'Cruz': [2066], 'Biotechnology;': [2067], 'BAF47': [2068, 3910, 3968], '(612110)': [2069], 'BAF60': [2071], '(611728)': [2072], 'BD': [2074], 'Transduction': [2075], 'Laboratories;': [2076], 'FLAG': [2077, 2170], '(M2)': [2079], 'Sigma;': [2081], 'BRM': [2082, 3567, 3611, 3678], '(ab15597)': [2083], 'Abcam;': [2085], '(51009-2-AP)': [2088], 'Proteintech.': [2090], 'Antibodies': [2091], 'recognizing': [2092], 'ARID2,': [2093, 3294], 'BAF57,': [2094, 2969, 3299], 'BAF53,': [2095, 3985], 'J1': [2097, 2754], 'generous': [2099], 'gifts': [2100], 'Dr.': [2102, 2108], 'Weidong': [2103], 'Wang;': [2104], 'ARID1A': [2105, 3796, 3992], 'Elisabeth': [2109], 'Moran.': [2110], 'purification': [2113, 2904, 3350, 3616], 'co-IPs,': [2115], 'lysed': [2118], 'DBP-IP': [2120, 2180], '(20': [2121, 2195], 'mm': [2122, 2127, 2130, 2138, 2141, 2183, 2196, 2201, 2206, 2301, 2313, 2316], 'HEPES,': [2123, 2197], 'pH': [2124, 2198, 2303, 2318], '7.9,': [2125, 2199], '1.5': [2126], 'MgCl2,': [2128], '140': [2129], 'NaCl,': [2131], '0.1%': [2132], 'Nonidet': [2133], 'P-40,': [2134], '10%': [2135], 'glycerol,': [2136, 2204], '0.2': [2137], 'ZnCl2,': [2139], 'dithiothreitol,': [2142], 'protease': [2143], 'inhibitors).': [2144], 'After': [2145, 2160, 2444, 2764], 'brief': [2148], 'sonication,': [2149], 'extracted': [2153, 2816], 'increasing': [2155], 'NaCl': [2156, 2184], '420': [2158, 2182], 'mm.': [2159], 'pelleting': [2161], 'insoluble': [2162], 'material,': [2163], 'purified': [2167, 2246, 3149, 3199, 3389, 3465, 3901], 'using': [2168, 2282, 2336, 2481, 2522, 2798, 2817, 2846, 3905], 'M2': [2169], 'affinity': [2171], 'matrix': [2172], '(Sigma).': [2173], 'Immunocomplexes': [2174], 'washed': [2176], 'six': [2177], 'times': [2178], 'containing': [2181, 2382], '20': [2186, 2266, 2757], 'μg/ml': [2187], 'ethidium': [2188], 'bromide': [2189], 'eluted': [2191], 'BC0.1': [2193], 'buffer': [2194, 2494, 2712], '2': [2200, 2309, 2707, 2741, 2751, 3886], 'EDTA,': [2202], '20%': [2203], '100': [2205, 2300, 2315], 'KCl)': [2207], '0.5': [2210, 2825], 'mg/ml': [2211], 'concentration': [2212], 'corresponding': [2215, 2734], 'peptide.': [2216], 'assays': [2218], 'essentially': [2220], 'performed': [2221, 2264, 2471, 2667, 2823, 2840, 3947], '(29Logie': [2225], 'Peterson': [2227], 'C.L.': [2228], 'Methods': [2229], 'Enzymol.': [2230], '1999;': [2231], '304:': [2232], '726-741Crossref': [2233], '(53)': [2236], 'modifications:': [2242, 2698], '200': [2243], 'ng': [2244, 2267], 'incubated': [2249, 2257, 2739], 'trace': [2251], 'amounts': [2252, 2993, 3632], '32P-labeled': [2254], 'γ-ATP': [2255], '37': [2259], '°C.': [2260], 'stimulation': [2262], 'DNA.': [2270], 'Different': [2271], 'phosphate': [2272], 'species': [2273], 'separated': [2275], 'thin': [2277], 'layer': [2278], 'chromatography': [2279], 'quantified': [2281], 'PhosphorImager.': [2284], 'Multidimensional': [2285], 'Identification': [2287], 'Technique': [2288], '(MudPIT)': [2289], 'Analysis—Trichloroacetic': [2290], 'acid-precipitated': [2291], 'IP': [2292], 'samples': [2293, 2370, 3408, 3493, 4239], 'resuspended': [2295, 2705], '8': [2297, 2717], 'm': [2298, 2310], 'urea,': [2299, 2311], 'Tris,': [2302, 2317], '8.5;': [2304, 2319], 'reduced;': [2305], 'alkylated;': [2306], 'diluted': [2307, 2724], 'CaCl2,': [2314], 'digested': [2321], 'trypsin.': [2323], 'tryptic': [2325, 2575], 'digests': [2326], 'supplemented': [2328], 'formic': [2330], '5%': [2333, 2560], 'analyzed': [2335], 'anion': [2338, 2401, 2411, 2434], 'cation': [2340, 2403, 2413, 2424], 'exchange': [2341, 2404, 2414, 2425, 2435], 'MudPIT': [2342, 2484, 3495, 4235, 4311], 'method': [2343, 2485], '(30Motoyama': [2347], 'Xu': [2349], 'Ruse': [2351], 'C.I.': [2352], 'Wohlschlegel': [2353], 'J.A.': [2354], 'Yates': [2355, 2544], 'III,': [2356, 2545], 'J.R.': [2357, 2546], 'Anal.': [2358], 'Chem.': [2359], '79:': [2361], '3623-3634Crossref': [2362], '(145)': [2365], 'Briefly': [2368], 'loaded': [2372], 'onto': [2373], '250-μm-inner': [2375], 'diameter': [2376, 2455], 'column': [2377, 2448, 2459], 'Kasil': [2380], 'frit': [2381], '2.5-cm': [2384, 2400], 'reverse': [2385, 2457], 'phase': [2386, 2458], 'section': [2387, 2405, 2415], 'packed': [2388, 2417], '5-μm,': [2390], '125-Å': [2391, 2463], 'Aqua': [2392, 2464], 'C18': [2393, 2465], 'resin': [2394, 2426, 2430, 2436, 2466], '(Phenomenex,': [2395], 'Torrance,': [2396], 'CA)': [2397], 'proximal': [2406], 'frit.': [2409], '1:2': [2420], 'mixture': [2421], 'strong': [2423], '(Partisphere': [2427], '5-μm': [2428], 'SCX': [2429], 'Whatman)': [2432], '(PolyWAX': [2437], 'LP': [2438], 'PolyLC': [2440], 'Inc.,': [2441], 'Columbia,': [2442], 'MD).': [2443], 'desalting,': [2445], 'biphasic': [2447], 'connected': [2450], '10-cm-long,': [2453], '100-μm-inner': [2454], 'analytical': [2456], 'made': [2460], '3-μm,': [2462], '(Phenomenex).': [2467], 'MS': [2468, 2498], 'linear': [2474], 'trap': [2475], 'quadrupole': [2476], 'spectrometer': [2478], '(ThermoFisher': [2479], 'Scientific)': [2480], 'three-step': [2483], 'salt': [2487, 2769, 2783], 'pulses': [2488], '0,': [2490], '40,': [2491], '100%': [2493], 'full': [2497], 'scan': [2499], 'followed': [2501], 'five': [2503, 3523], 'MS/MS': [2504, 2507], 'scans.': [2505], 'spectra': [2508], 'searched': [2510], 'SEQUEST': [2512], 'against': [2513], 'International': [2516], 'Index': [2518], 'data': [2520], 'base': [2521], '3-atomic': [2524], 'unit': [2526], 'tolerance.': [2528], 'search': [2530], 'filtered': [2533], 'version': [2537, 3908], 'DTASelect': [2539], '(31Tabb': [2540], 'D.L.': [2541], 'McDonald': [2542], 'W.H.': [2543], 'Proteome': [2548], 'Res.': [2549], '21-26Crossref': [2552], '(1144)': [2555], 'false': [2561, 2586, 3620], 'positive': [2562, 2587, 3621], 'cutoff': [2563], 'spectrum': [2566], 'level,': [2567], 'requiring': [2568], 'peptides': [2569, 2581, 3498, 3524, 3553, 3635, 3731, 3765, 4029, 4277], 'half-': [2572], 'fully': [2574], 'minimum': [2578], 'per': [2582], 'identification.': [2584], 'rate': [2588, 3623], '2%': [2593, 3625], 'lower.': [2595, 3627], 'absent': [2599], 'sample': [2603, 3479, 3517], '(Fig.': [2604, 2986, 3188, 3356, 3940, 3951, 4199], '1,': [2605], 'no': [2606], 'tagged': [2607, 3907], 'subunit)': [2608], 'except': [2609, 3409], '(three': [2611], 'peptides)': [2612], 'BAF53A': [2614], '(two': [2615], 'peptides).': [2616], 'Mowse': [2617], 'scores': [2619, 2624, 2654], 'peptide': [2623, 2653, 3612], 'non-probabilistic': [2627], 'basis': [2628], 'ranking': [2630], 'hits.': [2632], 'Peptide': [2633], 'score': [2634], '−10': [2636], '×': [2637, 2700, 2716], 'log(p)': [2638], 'where': [2639, 3410], 'p': [2640], 'probability': [2643], 'observed': [2646, 3240, 3344, 3645, 3860, 3977, 4051, 4142, 4202, 4253, 4304], 'match': [2647], 'random': [2650, 2830], 'event.': [2651], 'Individual': [2652], '>27': [2655], 'identity': [2657], 'extensive': [2659], 'homology': [2660, 3545], '(p': [2661], '<': [2662], '0.05).': [2663], 'IP—ChIP': [2665], '(32Kaeser': [2671], 'Iggo': [2673], '99:': [2683], '95-100Crossref': [2684], '(272)': [2687], 'buffers': [2691], 'Upstate': [2694], '∼40': [2699], '106': [2701], 'cross-linked': [2702], 'ml': [2708], 'SDS': [2710], 'lysis': [2711], 'sonicated': [2714], '4': [2715], 's,': [2718], 'power': [2719], '4.': [2720], 'Soluble': [2721], '3': [2726], 'volumes': [2727], 'ChIP': [2729], 'dilution': [2730], 'buffer,': [2731, 2771, 2777, 2785], 'lysate': [2733], '∼107': [2736], 'μg': [2742, 2800, 2806, 2826], 'antibody': [2744], '(HA,': [2745], 'TFIIB,': [2746], 'TFIID,': [2747], 'POLII)': [2749], 'μl': [2752, 2758], 'prebound': [2755], 'Dynal': [2760], 'G': [2762], 'beads.': [2763], 'washes': [2766, 2773, 2780], 'high': [2768, 2782, 2920], 'wash': [2770, 2776, 2784], 'LiCl': [2775], 'decross-linked': [2788], '65': [2790], '°C': [2791], '6': [2793, 3888, 3996, 4258], 'h.': [2794], 'precipitated': [2797], '10': [2799, 2805], 'yeast': [2802], 'tRNA': [2803], 'glycogen.': [2808], 'Extraction': [2810], 'Quantitative': [2812, 2837], 'PCR—Total': [2813], 'TRIzol': [2818], '(Invitrogen).': [2819, 2836], 'Reverse': [2820], 'total': [2828, 3521], 'RNA,': [2829], 'hexamers,': [2831], 'SuperScript': [2833], 'III': [2834], 'PCR': [2838], 'Stratagene': [2843], 'Mx3005P': [2844], 'system': [2845], 'SYBR': [2847], 'Green': [2848, 3254], '(Applied': [2849], 'Biosystems).': [2850], 'error': [2852], 'bars': [2853], 'represent': [2855, 4048], 'duplicate': [2856], 'measurements': [2857, 4226], 'independent': [2859], 'biological': [2860], 'duplicates.': [2861], 'Primer': [2862], 'sequences': [2863], 'listed': [2865], 'supplemental': [2867], 'materials.': [2868], 'Composition': [2869], 'Pluripotent': [2873], 'Cells—Initially': [2875], 'forms': [2879, 2959], 'ESCs.': [2887, 2967], 'strategy': [2891], 'epitope-tagged': [2894], 'virally': [2897], 'integrated': [2898], 'genome.': [2902], 'Affinity': [2903], 'then': [2906, 3322], 'accomplished': [2907], 'simple': [2910], 'one-step': [2911], 'procedure,': [2912], 'native': [2915], 'preparations': [2918, 3367], 'yield': [2921], 'purity': [2923], '(33Sif': [2924, 3914], 'Stukenberg': [2926, 3916], 'P.T.': [2927, 3917], 'Kirschner': [2928, 3918], 'M.W.': [2929, 3919], 'Kingston': [2930, 3252, 3920], 'R.E.': [2931, 3253, 3921], '12:': [2935, 3925], '2842-2851Crossref': [2936, 3926], '(227)': [2939, 3929], 'well': [2945], 'increase': [2949, 3184, 4010, 4271], 'ability': [2951], 'purify': [2953, 2989], 'most': [2954], 'BAF47,': [2968], 'BAF155,': [2970, 3297, 3456, 4031, 4045], 'all': [2975, 3392, 3407], 'associate': [2979, 3798], '1A).': [2987], 'substantial': [2992, 3543], 'homogeneously': [2995], 'undifferentiated': [2996, 3938], 'ESCs,': [2997], 'created': [2999], 'R218.': [3005], 'Both': [3006, 3023], 'line': [3013, 3081], 'lentiviruses': [3017, 3157], 'respectively.': [3022], 'exhibit': [3026], 'morphological': [3027], 'features': [3028], 'similar': [3029, 3067, 3092, 3231, 3371, 3631, 4137], 'withdrawal': [3039], 'RA': [3041, 3060, 3884], 'treatment': [3042], '(supplemental': [3043, 3284], 'Fig.': [3044, 3212, 3285, 4317], '1).': [3045, 3514], 'parental': [3052], 'response': [3058], 'albeit': [3068], 'slower': [3071], 'Oct4': [3072], 'mRNA': [3073], 'decrease': [3074, 4002, 4252], 'capable': [3083], 'differentiating': [3085, 3903], 'spontaneously': [3087], 'beating': [3088], 'cardiomyocytes': [3089], 'efficiency': [3091], 'reported': [3095], '(34Wobus': [3097], 'A.M.': [3098], 'Kaomei': [3099], 'Shan': [3101], 'Wellner': [3103], 'M.C.': [3104], 'Rohwedel': [3105], 'Ji': [3107], 'Fleischmann': [3109], 'Katus': [3111], 'H.A.': [3112], 'Hescheler': [3113], 'Franz': [3115], 'W.M.': [3116], 'Cardiol.': [3120], '1997;': [3121], '29:': [3122], '1525-1539Abstract': [3123], '(359)': [3129], '(data': [3132], 'shown).': [3134], 'Is': [3140], 'Composed': [3141], 'Limited': [3144], 'Subset': [3145], 'Components—To': [3147], 'prepare': [3148], 'transduced': [3155], 'C-terminal': [3160], 'FLAG-tagged': [3161, 3220, 3282], 'cDNA': [3162], 'Baf47,': [3164], 'Baf57,': [3165], 'Baf155,': [3166], 'Baf170,': [3167], 'Brg1.': [3169], 'Except': [3170], 'ectopic': [3173, 3437], 'did': [3178, 3475], 'lead': [3180], 'overall': [3183], '1B).': [3189], 'examine': [3191], 'unbiased': [3196], 'sufficient': [3200], 'material': [3201], 'analyze': [3203, 3477], 'silver': [3205], 'staining': [3206], 'MudPIT.': [3208], 'As': [3209, 3434], '1C,': [3213], 'anti-FLAG': [3214], 'eluates': [3215], '47,': [3222, 3316, 3396], '170': [3226], 'set': [3232], 'proteins,': [3234], 'resembles': [3236], 'pattern': [3239], 'initial': [3243], 'purifications': [3245, 3512], '(35Kwon': [3246], 'M.R.': [3255], 'Nature.': [3256], '1994;': [3257], '370:': [3258], '477-481Crossref': [3259], '(648)': [3262], 'Western': [3266, 3325, 3948, 4255, 4288], 'blotting,': [3267], 'spectroscopy': [3269, 4018], 'bands,': [3273], 'differences': [3275, 4109, 4181], 'migration': [3277], '2),': [3286], 'co-localized': [3288], 'known': [3290], 'BAF60,': [3298], 'BAF53': [3301], 'indicated': [3304], 'bands.': [3305], 'Majority': [3307], 'Complexes': [3310], 'Contain': [3311], 'Core': [3313], 'Subunits': [3314, 3484], '155': [3319, 3399], 'BRG1—We': [3321], 'blotting': [3326, 4256, 4289], 'any': [3328, 3480, 3729], 'preferentially': [3331, 3664], 'assembled': [3332], 'particular': [3334], 'associations': [3338], 'proteins.': [3342], 'bait': [3347], 'general': [3353], 'slightly': [3354], 'overrepresented': [3355], '1D).': [3357], 'However,': [3358, 3654], 'exception': [3361], 'sample,': [3365], 'remarkably': [3370], 'ratio': [3372], 'components.': [3378], 'consistent': [3381], 'notion': [3384, 4034], 'four': [3393, 3507], 'subunits:': [3394], 'BRG1.': [3401], 'below': [3404], 'detection': [3405], 'it': [3411, 3417], 'ectopically': [3413], 'expressed,': [3414], 'suggesting': [3415, 3824], 'rare': [3419], 'lentiviral': [3425], 'increased': [3427], 'abundance': [3429], 'above': [3430], 'normal,': [3431], 'endogenous': [3432], 'levels.': [3433], 'expected,': [3435], 'resulted': [3444], 'replacement': [3447], 'molecules': [3452], 'paralogue': [3455, 3839], 'explaining': [3457], 'why': [3458], 'lower': [3462], 'through': [3466], 'BAF170.': [3467], 'Because': [3468, 3532, 3566], 'overexpression': [3471], 'further.': [3481], 'Several': [3482], 'Paralogous': [3483], 'Are': [3485], 'Overrepresented': [3486], 'Forms—A': [3489], 'comparison': [3490], '14': [3500], 'documented': [3502], 'subunit-specific': [3508, 3944], 'HeLa': [3511, 3652, 3756], '(Table': [3513, 4240], 'only': [3518, 3551], '(see': [3529], '“Experimental': [3530], 'Procedures”).': [3531], 'groups': [3534, 3643], '(BRG1/BRM,': [3538], 'BAF155/BAF170,': [3539], 'ARID1A/ARID1B)': [3541], 'share': [3542], '(>50%': [3546], 'each': [3548], 'group),': [3549], 'included': [3552], 'could': [3558, 3726, 4098, 4283], 'unambiguously': [3560], 'attributed': [3561], 'polypeptide.': [3565], '(21Wang': [3574, 4053], 'reflects': [3617], 'expected': [3619, 3629], 'roughly': [3630], 'unambiguous': [3634, 3730, 3764], 'when': [3636], 'comparing': [3637], 'incorporated.': [3665], 'case': [3668, 3717], 'BRG1/BRM,': [3670], 'suggest': [3673], 'underrepresented': [3676, 4324], 'might': [3679, 3829, 4185], 'negligible': [3682], 'quantities': [3683], 'agreement': [3687], '(36Dauvillier': [3695], 'Ott': [3697], 'M.O.': [3698], 'Renard': [3699], 'J.P.': [3700], 'Legouy': [3701], 'Mech.': [3703], '101:': [3706], '221-225Crossref': [3707], '(11)': [3710], 'postmitotic': [3720], 'neuron-specific': [3721], 'BAF53B': [3722], 'find': [3728], '(37Olave': [3732], 'I.': [3733], '2509-2517Crossref': [3746], '(122)': [3749], 'Also': [3752], 'ARID1B': [3760, 4090, 4296], 'had': [3761], 'considerably': [3762], 'fewer': [3763], 'than': [3768], 'counterparts': [3770], 'implying': [3774], 'less': [3779], 'abundant.': [3780], 'ARID1B-containing': [3781], 'interact': [3787], 'activators': [3790], 'opposed': [3792], 'repressors': [3801], 'better': [3832], 'suited': [3833], 'repressive': [3836], 'role.TABLE': [3837], '1Biased': [3838], 'usage': [3840, 3864, 4321], 'cellsHeLa': [3843], 'BAF47ESCBRG1BAF47BAF57BAF155BAF471823212115BRG13476484550BRM341122BAF1554467526237BAF170601214105BAF60A1934303227BAF60B171091511BAF60C25332BAF53A2538152518BAF572217212817PB5139373125ARID1A4861496450ARID1B3611141512ARID23018241416': [3844], 'Open': [3845, 4328], 'table': [3846, 4329], 'tab': [3850, 4333], 'Differentiation': [3851, 4088], 'Increases': [3852, 4089], 'Incorporation': [3853], 'Previously': [3855], 'Under-represented': [3856], 'Components—Because': [3858], 'surprisingly': [3862], 'changes': [3875, 4103, 4129, 4188, 4302], 'days': [3889, 4259], 'descendants.': [3897], 'preparation': [3936, 3955], '2A).': [3941], 'identify': [3943], 'changes,': [3945], 'blot': [3949], 'analyses': [3950], '2B).': [3952], 'standardized': [3957], 'give': [3959], 'approximately': [3960], 'same': [3962], 'BAF57.': [3970], 'Throughout': [3971], 'course': [3973], 'considerable': [3978, 4214], 'induction': [3979], 'subunits,': [3982], 'BRM.': [3988], 'Conversely': [3989], 'decreased': [3993], 'day': [3995], 'exhibited': [4000], 'immunoreactive': [4005], '155-kDa': [4006], 'band': [4007, 4022], 'signal': [4013], '120': [4015, 4024], 'kDa.': [4016], 'Mass': [4017], 'silver-stainable': [4021], 'kDa': [4025], '18': [4027], 'supporting': [4032], 'splice': [4037], 'variant,': [4038], 'cleavage,': [4040], 'degradation': [4042], 'product': [4043], 'BAF110': [4052], 'RA-mediated': [4087], 'Expense': [4093], 'ARID1A—Several': [4095], 'mechanisms': [4097], 'responsible': [4100], 'composition,': [4106], 'stability,': [4114], 'variations': [4116, 4140], 'rates.': [4120], 'It': [4121], 'leads': [4127], '(17Yan': [4146], 'therefore': [4178], 'tested': [4179], 'explain': [4186], 'measuring': [4193], '2C).': [4200], 'little': [4203], 'change,': [4204], 'if': [4205], 'any,': [4206], 'Baf155': [4210], 'Brg1,': [4212], 'whereas': [4213], 'increases': [4215, 4320], 'Brm': [4217], 'Baf170': [4219], 'transcripts': [4220], 'apparent.': [4222], 'corroborated': [4224], 'indications': [4232], '2).': [4241], 'detected': [4244], 'reduction': [4246], 'Arid1a': [4248], 'message,': [4249], 'confirming': [4250], 'Arid1b': [4263], 'exhibits': [4264], 'opposing': [4266], 'phenotype': [4267], 'transcript': [4274], 'spectroscopy.': [4280], 'Unfortunately': [4281], 'confirm': [4285], 'because': [4290], 'lacked': [4292], 'recognized': [4295], 'under': [4297], 'conditions.': [4299], 'compositional': [4301], 'approaches': [4307], '(and': [4308], 'suggested': [4309], 'ARID1B)': [4313], 'summarized': [4315], '2D.TABLE': [4318], '2Differentiation': [4319], 'paraloguesESCDay': [4325], '2Day': [4326], 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