Publication Information

{'id': 'https://openalex.org/W1969726207', 'doi': 'https://doi.org/10.1139/g10-061', 'title': 'The evolution of chloroplast genome structure in ferns', 'display_name': 'The evolution of chloroplast genome structure in ferns', 'publication_year': 2010, 'publication_date': '2010-09-01', 'ids': {'openalex': 'https://openalex.org/W1969726207', 'doi': 'https://doi.org/10.1139/g10-061', 'mag': '1969726207', 'pmid': 'https://pubmed.ncbi.nlm.nih.gov/20924422'}, 'language': 'en', 'primary_location': {'is_oa': False, 'landing_page_url': 'https://doi.org/10.1139/g10-061', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S170991295', 'display_name': 'Genome', 'issn_l': '0831-2796', 'issn': ['0831-2796', '1480-3321'], 'is_oa': False, 'is_in_doaj': False, 'is_core': True, 'host_organization': 'https://openalex.org/P4310313060', 'host_organization_name': 'NRC Research Press', 'host_organization_lineage': ['https://openalex.org/P4310313060'], 'host_organization_lineage_names': ['NRC Research Press'], 'type': 'journal'}, 'license': None, 'license_id': None, 'version': None, 'is_accepted': False, 'is_published': False}, 'type': 'article', 'type_crossref': 'journal-article', 'indexed_in': ['crossref', 'pubmed'], 'open_access': {'is_oa': False, 'oa_status': 'closed', 'oa_url': 'https://digitalcommons.usu.edu/cgi/viewcontent.cgi?article=1773&context=biology_facpub', 'any_repository_has_fulltext': True}, 'authorships': [{'author_position': 'first', 'author': {'id': 'https://openalex.org/A5064537328', 'display_name': 'Paul G. Wolf', 'orcid': 'https://orcid.org/0000-0002-4317-6976'}, 'institutions': [{'id': 'https://openalex.org/I121980950', 'display_name': 'Utah State University', 'ror': 'https://ror.org/00h6set76', 'country_code': 'US', 'type': 'education', 'lineage': ['https://openalex.org/I121980950']}], 'countries': ['US'], 'is_corresponding': False, 'raw_author_name': 'Paul G. Wolf', 'raw_affiliation_strings': ['Department of Biology, and Ecology Center, Utah State University, 5305 Old Main Hill, Logan, UT 84322, USA.'], 'affiliations': [{'raw_affiliation_string': 'Department of Biology, and Ecology Center, Utah State University, 5305 Old Main Hill, Logan, UT 84322, USA.', 'institution_ids': ['https://openalex.org/I121980950']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5087810155', 'display_name': 'Jessie M. Roper', 'orcid': None}, 'institutions': [{'id': 'https://openalex.org/I121980950', 'display_name': 'Utah State University', 'ror': 'https://ror.org/00h6set76', 'country_code': 'US', 'type': 'education', 'lineage': ['https://openalex.org/I121980950']}], 'countries': ['US'], 'is_corresponding': False, 'raw_author_name': 'Jessie M. Roper', 'raw_affiliation_strings': ['Department of Biology, and Ecology Center, Utah State University, 5305 Old Main Hill, Logan, UT 84322, USA.'], 'affiliations': [{'raw_affiliation_string': 'Department of Biology, and Ecology Center, Utah State University, 5305 Old Main Hill, Logan, UT 84322, USA.', 'institution_ids': ['https://openalex.org/I121980950']}]}, {'author_position': 'last', 'author': {'id': 'https://openalex.org/A5050500230', 'display_name': 'Aaron M. Duffy', 'orcid': 'https://orcid.org/0000-0003-0530-6191'}, 'institutions': [{'id': 'https://openalex.org/I121980950', 'display_name': 'Utah State University', 'ror': 'https://ror.org/00h6set76', 'country_code': 'US', 'type': 'education', 'lineage': ['https://openalex.org/I121980950']}], 'countries': ['US'], 'is_corresponding': False, 'raw_author_name': 'Aaron M. Duffy', 'raw_affiliation_strings': ['Department of Biology, and Ecology Center, Utah State University, 5305 Old Main Hill, Logan, UT 84322, USA.'], 'affiliations': [{'raw_affiliation_string': 'Department of Biology, and Ecology Center, Utah State University, 5305 Old Main Hill, Logan, UT 84322, USA.', 'institution_ids': ['https://openalex.org/I121980950']}]}], 'institution_assertions': [], 'countries_distinct_count': 1, 'institutions_distinct_count': 1, 'corresponding_author_ids': [], 'corresponding_institution_ids': [], 'apc_list': None, 'apc_paid': None, 'fwci': 4.918, 'has_fulltext': True, 'fulltext_origin': 'ngrams', 'cited_by_count': 65, 'citation_normalized_percentile': {'value': 0.96818, 'is_in_top_1_percent': False, 'is_in_top_10_percent': True}, 'cited_by_percentile_year': {'min': 95, 'max': 96}, 'biblio': {'volume': '53', 'issue': '9', 'first_page': '731', 'last_page': '738'}, 'is_retracted': False, 'is_paratext': False, 'primary_topic': {'id': 'https://openalex.org/T10385', 'display_name': 'Plant Diversity and Evolution', 'score': 0.9998, 'subfield': {'id': 'https://openalex.org/subfields/1105', 'display_name': 'Ecology, Evolution, Behavior and Systematics'}, 'field': {'id': 'https://openalex.org/fields/11', 'display_name': 'Agricultural and Biological Sciences'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}, 'topics': [{'id': 'https://openalex.org/T10385', 'display_name': 'Plant Diversity and Evolution', 'score': 0.9998, 'subfield': {'id': 'https://openalex.org/subfields/1105', 'display_name': 'Ecology, Evolution, Behavior and Systematics'}, 'field': {'id': 'https://openalex.org/fields/11', 'display_name': 'Agricultural and Biological Sciences'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}, {'id': 'https://openalex.org/T12359', 'display_name': 'Fern and Epiphyte Biology', 'score': 0.9997, 'subfield': {'id': 'https://openalex.org/subfields/1105', 'display_name': 'Ecology, Evolution, Behavior and Systematics'}, 'field': {'id': 'https://openalex.org/fields/11', 'display_name': 'Agricultural and Biological Sciences'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}, {'id': 'https://openalex.org/T14049', 'display_name': 'Plant and Fungal Species Descriptions', 'score': 0.9995, 'subfield': {'id': 'https://openalex.org/subfields/1312', 'display_name': 'Molecular Biology'}, 'field': {'id': 'https://openalex.org/fields/13', 'display_name': 'Biochemistry, Genetics and Molecular Biology'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}], 'keywords': [{'id': 'https://openalex.org/keywords/inverted-repeat', 'display_name': 'Inverted repeat', 'score': 0.42092174}], 'concepts': [{'id': 'https://openalex.org/C86803240', 'wikidata': 'https://www.wikidata.org/wiki/Q420', 'display_name': 'Biology', 'level': 0, 'score': 0.8194678}, {'id': 'https://openalex.org/C2776985847', 'wikidata': 'https://www.wikidata.org/wiki/Q80005', 'display_name': 'Fern', 'level': 2, 'score': 0.7817389}, {'id': 'https://openalex.org/C48050816', 'wikidata': 'https://www.wikidata.org/wiki/Q3182853', 'display_name': 'Chloroplast DNA', 'level': 4, 'score': 0.76735103}, {'id': 'https://openalex.org/C193252679', 'wikidata': 'https://www.wikidata.org/wiki/Q242125', 'display_name': 'Phylogenetic tree', 'level': 3, 'score': 0.5841236}, {'id': 'https://openalex.org/C93829228', 'wikidata': 'https://www.wikidata.org/wiki/Q165963', 'display_name': 'Plastid', 'level': 4, 'score': 0.5380518}, {'id': 'https://openalex.org/C141231307', 'wikidata': 'https://www.wikidata.org/wiki/Q7020', 'display_name': 'Genome', 'level': 3, 'score': 0.53763413}, {'id': 'https://openalex.org/C78458016', 'wikidata': 'https://www.wikidata.org/wiki/Q840400', 'display_name': 'Evolutionary biology', 'level': 1, 'score': 0.52985215}, {'id': 'https://openalex.org/C90132467', 'wikidata': 'https://www.wikidata.org/wiki/Q171184', 'display_name': 'Phylogenetics', 'level': 3, 'score': 0.51752305}, {'id': 'https://openalex.org/C197583594', 'wikidata': 'https://www.wikidata.org/wiki/Q1052390', 'display_name': 'Most recent common ancestor', 'level': 4, 'score': 0.42199886}, {'id': 'https://openalex.org/C51603236', 'wikidata': 'https://www.wikidata.org/wiki/Q4852694', 'display_name': 'Inverted repeat', 'level': 4, 'score': 0.42092174}, {'id': 'https://openalex.org/C54355233', 'wikidata': 'https://www.wikidata.org/wiki/Q7162', 'display_name': 'Genetics', 'level': 1, 'score': 0.31899607}, {'id': 'https://openalex.org/C59822182', 'wikidata': 'https://www.wikidata.org/wiki/Q441', 'display_name': 'Botany', 'level': 1, 'score': 0.24284509}, {'id': 'https://openalex.org/C69305403', 'wikidata': 'https://www.wikidata.org/wiki/Q47263', 'display_name': 'Chloroplast', 'level': 3, 'score': 0.22162366}, {'id': 'https://openalex.org/C104317684', 'wikidata': 'https://www.wikidata.org/wiki/Q7187', 'display_name': 'Gene', 'level': 2, 'score': 0.2173278}], 'mesh': [{'descriptor_ui': 'D002736', 'descriptor_name': 'Chloroplasts', 'qualifier_ui': 'Q000235', 'qualifier_name': 'genetics', 'is_major_topic': True}, {'descriptor_ui': 'D019143', 'descriptor_name': 'Evolution, Molecular', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': True}, {'descriptor_ui': 'D029624', 'descriptor_name': 'Ferns', 'qualifier_ui': 'Q000235', 'qualifier_name': 'genetics', 'is_major_topic': True}, {'descriptor_ui': 'D054628', 'descriptor_name': 'Genome, Chloroplast', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': True}, {'descriptor_ui': 'D018087', 'descriptor_name': 'Plastids', 'qualifier_ui': 'Q000235', 'qualifier_name': 'genetics', 'is_major_topic': True}, {'descriptor_ui': 'D057345', 'descriptor_name': 'Sequence Inversion', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': True}, {'descriptor_ui': 'D001483', 'descriptor_name': 'Base Sequence', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D002736', 'descriptor_name': 'Chloroplasts', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D029624', 'descriptor_name': 'Ferns', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D023061', 'descriptor_name': 'Gene Order', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D017343', 'descriptor_name': 'Genes, Plant', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D018745', 'descriptor_name': 'Genome, Plant', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D007438', 'descriptor_name': 'Introns', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D055029', 'descriptor_name': 'Inverted Repeat Sequences', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D008969', 'descriptor_name': 'Molecular Sequence Data', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D010802', 'descriptor_name': 'Phylogeny', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D018087', 'descriptor_name': 'Plastids', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D016133', 'descriptor_name': 'Polymerase Chain Reaction', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D017422', 'descriptor_name': 'Sequence Analysis, DNA', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}], 'locations_count': 3, 'locations': [{'is_oa': False, 'landing_page_url': 'https://doi.org/10.1139/g10-061', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S170991295', 'display_name': 'Genome', 'issn_l': '0831-2796', 'issn': ['0831-2796', '1480-3321'], 'is_oa': False, 'is_in_doaj': False, 'is_core': True, 'host_organization': 'https://openalex.org/P4310313060', 'host_organization_name': 'NRC Research Press', 'host_organization_lineage': ['https://openalex.org/P4310313060'], 'host_organization_lineage_names': ['NRC Research Press'], 'type': 'journal'}, 'license': None, 'license_id': None, 'version': None, 'is_accepted': False, 'is_published': False}, {'is_oa': True, 'landing_page_url': 'https://digitalcommons.usu.edu/biology_facpub/774', 'pdf_url': 'https://digitalcommons.usu.edu/cgi/viewcontent.cgi?article=1773&context=biology_facpub', 'source': {'id': 'https://openalex.org/S4377196327', 'display_name': 'Digital Commons - USU (Utah State University)', 'issn_l': None, 'issn': None, 'is_oa': False, 'is_in_doaj': False, 'is_core': False, 'host_organization': 'https://openalex.org/I121980950', 'host_organization_name': 'Utah State University', 'host_organization_lineage': ['https://openalex.org/I121980950'], 'host_organization_lineage_names': ['Utah State University'], 'type': 'repository'}, 'license': None, 'license_id': None, 'version': 'submittedVersion', 'is_accepted': False, 'is_published': False}, {'is_oa': False, 'landing_page_url': 'https://pubmed.ncbi.nlm.nih.gov/20924422', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S4306525036', 'display_name': 'PubMed', 'issn_l': None, 'issn': None, 'is_oa': False, 'is_in_doaj': False, 'is_core': False, 'host_organization': 'https://openalex.org/I1299303238', 'host_organization_name': 'National Institutes of Health', 'host_organization_lineage': ['https://openalex.org/I1299303238'], 'host_organization_lineage_names': ['National Institutes of Health'], 'type': 'repository'}, 'license': None, 'license_id': None, 'version': None, 'is_accepted': False, 'is_published': False}], 'best_oa_location': {'is_oa': True, 'landing_page_url': 'https://digitalcommons.usu.edu/biology_facpub/774', 'pdf_url': 'https://digitalcommons.usu.edu/cgi/viewcontent.cgi?article=1773&context=biology_facpub', 'source': {'id': 'https://openalex.org/S4377196327', 'display_name': 'Digital Commons - USU (Utah State University)', 'issn_l': None, 'issn': None, 'is_oa': False, 'is_in_doaj': False, 'is_core': False, 'host_organization': 'https://openalex.org/I121980950', 'host_organization_name': 'Utah State University', 'host_organization_lineage': ['https://openalex.org/I121980950'], 'host_organization_lineage_names': ['Utah State University'], 'type': 'repository'}, 'license': None, 'license_id': None, 'version': 'submittedVersion', 'is_accepted': False, 'is_published': False}, 'sustainable_development_goals': [{'score': 0.77, 'display_name': 'Life on land', 'id': 'https://metadata.un.org/sdg/15'}], 'grants': [], 'datasets': [], 'versions': [], 'referenced_works_count': 32, 'referenced_works': ['https://openalex.org/W1971864911', 'https://openalex.org/W1979971790', 'https://openalex.org/W1989533231', 'https://openalex.org/W2003687609', 'https://openalex.org/W2011459445', 'https://openalex.org/W2017793602', 'https://openalex.org/W2020580643', 'https://openalex.org/W2030601370', 'https://openalex.org/W2033667720', 'https://openalex.org/W2041246058', 'https://openalex.org/W2064212541', 'https://openalex.org/W2069010522', 'https://openalex.org/W2079807534', 'https://openalex.org/W2087360477', 'https://openalex.org/W2090525972', 'https://openalex.org/W2096909116', 'https://openalex.org/W2099185924', 'https://openalex.org/W2101891826', 'https://openalex.org/W2106369048', 'https://openalex.org/W2110245550', 'https://openalex.org/W2118504484', 'https://openalex.org/W2132690534', 'https://openalex.org/W2136846721', 'https://openalex.org/W2138207336', 'https://openalex.org/W2140865425', 'https://openalex.org/W2147554682', 'https://openalex.org/W2150459290', 'https://openalex.org/W2166592514', 'https://openalex.org/W2176274261', 'https://openalex.org/W2314009416', 'https://openalex.org/W4255466524', 'https://openalex.org/W775421227'], 'related_works': ['https://openalex.org/W4361276328', 'https://openalex.org/W4285387505', 'https://openalex.org/W4285148940', 'https://openalex.org/W3177474279', 'https://openalex.org/W2957942727', 'https://openalex.org/W2895371006', 'https://openalex.org/W2608097890', 'https://openalex.org/W2176274261', 'https://openalex.org/W1979971790', 'https://openalex.org/W1969726207'], 'abstract_inverted_index': {'The': [0, 40], 'plastid': [1], 'genome': [2], '(plastome)': [3], 'is': [4, 118, 168, 180], 'a': [5, 20, 27, 34, 49, 79, 91, 136, 144, 165, 170, 173], 'rich': [6], 'source': [7], 'of': [8, 22, 30, 51, 59, 71, 93, 100, 109, 139, 158, 172, 214], 'phylogenetic': [9], 'and': [10, 84, 129, 206], 'other': [11], 'comparative': [12], 'data': [13], 'in': [14, 26, 43, 97, 105, 121, 162, 204], 'plants.': [15, 61], 'Most': [16], 'land': [17], 'plants': [18], 'possess': [19], 'plastome': [21, 36, 57, 73, 215], 'similar': [23], 'structure.': [24], 'However,': [25, 112], 'major': [28], 'group': [29], 'plants,': [31], 'the': [32, 56, 66, 69, 72, 98, 101, 106, 113, 127, 148, 155, 159, 182, 191, 194, 212], 'ferns,': [33], 'unique': [35, 156], 'structure': [37, 70, 117], 'has': [38, 45], 'evolved.': [39], 'gene': [41, 160], 'order': [42], 'ferns': [44, 163], 'been': [46], 'explained': [47], 'by': [48], 'series': [50], 'genomic': [52], 'inversions': [53, 96, 141, 201], 'relative': [54], 'to': [55, 82, 126, 147, 186], 'organization': [58], 'seed': [60], 'Here,': [62], 'we': [63], 'examine': [64], 'for': [65, 211], 'first': [67], 'time': [68], 'across': [74], 'fern': [75, 131], 'phylogeny.': [76], 'We': [77, 88, 133, 151, 197], 'used': [78], 'PCR-based': [80], 'strategy': [81], 'map': [83], 'partially': [85, 94], 'sequence': [86], 'plastomes.': [87], 'found': [89, 120, 134, 153], 'that': [90, 135, 154], 'pair': [92, 138], 'overlapping': [95, 140], 'region': [99], 'inverted': [102], 'repeat': [103], 'occurred': [104, 142], 'common': [107], 'ancestor': [108], 'most': [110], 'ferns.': [111], 'ancestral': [114], '(seed': [115], 'plant)': [116], 'still': [119], 'early': [122], 'diverging': [123], 'branches': [124], 'leading': [125, 146], 'osmundoid': [128], 'filmy': [130], 'lineages.': [132], 'second': [137], 'on': [143, 190, 199], 'branch': [145], 'core': [149], 'leptosporangiates.': [150], 'also': [152], 'placement': [157], 'matK': [161], '(lacking': [164], 'flanking': [166], 'intron)': [167], 'not': [169], 'result': [171], 'large-scale': [174], 'inversion,': [175], 'as': [176], 'previously': [177], 'thought.': [178], 'This': [179], 'because': [181], 'intron': [183], 'loss': [184], 'maps': [185], 'an': [187], 'earlier': [188], 'point': [189], 'phylogeny': [192], 'than': [193], 'nearby': [195], 'inversion.': [196], 'speculate': [198], 'why': [200], 'may': [202, 209], 'occur': [203], 'pairs': [205], 'what': [207], 'this': [208], 'mean': [210], 'dynamics': [213], 'evolution.': [216]}, 'cited_by_api_url': 'https://api.openalex.org/works?filter=cites:W1969726207', 'counts_by_year': [{'year': 2024, 'cited_by_count': 6}, {'year': 2023, 'cited_by_count': 2}, {'year': 2022, 'cited_by_count': 6}, {'year': 2021, 'cited_by_count': 4}, {'year': 2020, 'cited_by_count': 5}, {'year': 2019, 'cited_by_count': 4}, {'year': 2018, 'cited_by_count': 8}, {'year': 2017, 'cited_by_count': 5}, {'year': 2016, 'cited_by_count': 2}, {'year': 2015, 'cited_by_count': 3}, {'year': 2014, 'cited_by_count': 4}, {'year': 2013, 'cited_by_count': 3}, {'year': 2012, 'cited_by_count': 6}], 'updated_date': '2025-01-20T12:47:27.780768', 'created_date': '2016-06-24'}