Get quick answers to your questions about the article from our AI researcher chatbot
{'id': 'https://openalex.org/W1936255372', 'doi': 'https://doi.org/10.1093/nar/gkv608', 'title': 'Complementing tissue characterization by integrating transcriptome profiling from the Human Protein Atlas and from the FANTOM5 consortium', 'display_name': 'Complementing tissue characterization by integrating transcriptome profiling from the Human Protein Atlas and from the FANTOM5 consortium', 'publication_year': 2015, 'publication_date': '2015-06-27', 'ids': {'openalex': 'https://openalex.org/W1936255372', 'doi': 'https://doi.org/10.1093/nar/gkv608', 'mag': '1936255372', 'pmid': 'https://pubmed.ncbi.nlm.nih.gov/26117540', 'pmcid': 'https://www.ncbi.nlm.nih.gov/pmc/articles/4538815'}, 'language': 'en', 'primary_location': {'is_oa': True, 'landing_page_url': 'https://doi.org/10.1093/nar/gkv608', 'pdf_url': 'https://academic.oup.com/nar/article-pdf/43/14/6787/16659651/gkv608.pdf', 'source': {'id': 'https://openalex.org/S134668137', 'display_name': 'Nucleic Acids Research', 'issn_l': '0305-1048', 'issn': ['0305-1048', '1362-4954', '1362-4962'], 'is_oa': True, 'is_in_doaj': True, 'is_core': True, 'host_organization': 'https://openalex.org/P4310311648', 'host_organization_name': 'Oxford University Press', 'host_organization_lineage': ['https://openalex.org/P4310311647', 'https://openalex.org/P4310311648'], 'host_organization_lineage_names': ['University of Oxford', 'Oxford University Press'], 'type': 'journal'}, 'license': 'cc-by', 'license_id': 'https://openalex.org/licenses/cc-by', 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, 'type': 'article', 'type_crossref': 'journal-article', 'indexed_in': ['crossref', 'pubmed'], 'open_access': {'is_oa': True, 'oa_status': 'gold', 'oa_url': 'https://academic.oup.com/nar/article-pdf/43/14/6787/16659651/gkv608.pdf', 'any_repository_has_fulltext': True}, 'authorships': [{'author_position': 'first', 'author': {'id': 'https://openalex.org/A5019081847', 'display_name': 'Nancy Yu', 'orcid': 'https://orcid.org/0000-0001-8321-8141'}, 'institutions': [{'id': 'https://openalex.org/I28166907', 'display_name': 'Karolinska Institutet', 'ror': 'https://ror.org/056d84691', 'country_code': 'SE', 'type': 'education', 'lineage': ['https://openalex.org/I28166907']}, {'id': 'https://openalex.org/I2800139495', 'display_name': 'Science for Life Laboratory', 'ror': 'https://ror.org/04ev03g22', 'country_code': 'SE', 'type': 'facility', 'lineage': ['https://openalex.org/I2800139495']}], 'countries': ['SE'], 'is_corresponding': False, 'raw_author_name': 'Nancy Yiu-Lin Yu', 'raw_affiliation_strings': ['Department of Biosciences and Nutrition, Karolinska Institute, Huddinge, 14183, Sweden', 'Science for Life Laboratory, Karolinska Institute, Solna, 17121, Sweden'], 'affiliations': [{'raw_affiliation_string': 'Department of Biosciences and Nutrition, Karolinska Institute, Huddinge, 14183, Sweden', 'institution_ids': ['https://openalex.org/I28166907']}, {'raw_affiliation_string': 'Science for Life Laboratory, Karolinska Institute, Solna, 17121, Sweden', 'institution_ids': ['https://openalex.org/I2800139495', 'https://openalex.org/I28166907']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5111957223', 'display_name': 'Björn M. Hallström', 'orcid': None}, 'institutions': [{'id': 'https://openalex.org/I86987016', 'display_name': 'KTH Royal Institute of Technology', 'ror': 'https://ror.org/026vcq606', 'country_code': 'SE', 'type': 'education', 'lineage': ['https://openalex.org/I86987016']}, {'id': 'https://openalex.org/I2800139495', 'display_name': 'Science for Life Laboratory', 'ror': 'https://ror.org/04ev03g22', 'country_code': 'SE', 'type': 'facility', 'lineage': ['https://openalex.org/I2800139495']}], 'countries': ['SE'], 'is_corresponding': False, 'raw_author_name': 'Björn M. Hallström', 'raw_affiliation_strings': ['Science for Life Laboratory, KTH-Royal Institute of Technology, Solna, 17121, Sweden'], 'affiliations': [{'raw_affiliation_string': 'Science for Life Laboratory, KTH-Royal Institute of Technology, Solna, 17121, Sweden', 'institution_ids': ['https://openalex.org/I86987016', 'https://openalex.org/I2800139495']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5021112720', 'display_name': 'Linn Fagerberg', 'orcid': 'https://orcid.org/0000-0003-0198-7137'}, 'institutions': [{'id': 'https://openalex.org/I86987016', 'display_name': 'KTH Royal Institute of Technology', 'ror': 'https://ror.org/026vcq606', 'country_code': 'SE', 'type': 'education', 'lineage': ['https://openalex.org/I86987016']}, {'id': 'https://openalex.org/I2800139495', 'display_name': 'Science for Life Laboratory', 'ror': 'https://ror.org/04ev03g22', 'country_code': 'SE', 'type': 'facility', 'lineage': ['https://openalex.org/I2800139495']}], 'countries': ['SE'], 'is_corresponding': False, 'raw_author_name': 'Linn Fagerberg', 'raw_affiliation_strings': ['Science for Life Laboratory, KTH-Royal Institute of Technology, Solna, 17121, Sweden'], 'affiliations': [{'raw_affiliation_string': 'Science for Life Laboratory, KTH-Royal Institute of Technology, Solna, 17121, Sweden', 'institution_ids': ['https://openalex.org/I86987016', 'https://openalex.org/I2800139495']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5005639182', 'display_name': 'Fredrik Pontén', 'orcid': 'https://orcid.org/0000-0003-0703-3940'}, 'institutions': [{'id': 'https://openalex.org/I2800139495', 'display_name': 'Science for Life Laboratory', 'ror': 'https://ror.org/04ev03g22', 'country_code': 'SE', 'type': 'facility', 'lineage': ['https://openalex.org/I2800139495']}, {'id': 'https://openalex.org/I123387679', 'display_name': 'Uppsala University', 'ror': 'https://ror.org/048a87296', 'country_code': 'SE', 'type': 'education', 'lineage': ['https://openalex.org/I123387679']}], 'countries': ['SE'], 'is_corresponding': False, 'raw_author_name': 'Fredrik Ponten', 'raw_affiliation_strings': ['Department of Immunology, Genetics and Pathology, Science for Life Laboratory, Uppsala University, Uppsala, 751 85, Sweden'], 'affiliations': [{'raw_affiliation_string': 'Department of Immunology, Genetics and Pathology, Science for Life Laboratory, Uppsala University, Uppsala, 751 85, Sweden', 'institution_ids': ['https://openalex.org/I2800139495', 'https://openalex.org/I123387679']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5051284054', 'display_name': 'Hideya Kawaji', 'orcid': 'https://orcid.org/0000-0002-0575-0308'}, 'institutions': [{'id': 'https://openalex.org/I4210150921', 'display_name': 'RIKEN Center for Integrative Medical Sciences', 'ror': 'https://ror.org/04mb6s476', 'country_code': 'JP', 'type': 'facility', 'lineage': ['https://openalex.org/I4210110652', 'https://openalex.org/I4210150921']}, {'id': 'https://openalex.org/I4210110652', 'display_name': 'RIKEN', 'ror': 'https://ror.org/01sjwvz98', 'country_code': 'JP', 'type': 'facility', 'lineage': ['https://openalex.org/I4210110652']}], 'countries': ['JP'], 'is_corresponding': False, 'raw_author_name': 'Hideya Kawaji', 'raw_affiliation_strings': ['RIKEN Center for Life Science Technologies (CLST), Division of Genomic Technologies, RIKEN Yokohama Institute, Tsurumi-ku, Yokohama, 230-0045, Japan', 'RIKEN Omics Science Center1‡, Yokohama, Kanagawa, 230-0045, Japan', 'RIKEN Preventive Medicine and Diagnosis Innovation Program, Wako, Saitama 351-0198, Japan'], 'affiliations': [{'raw_affiliation_string': 'RIKEN Center for Life Science Technologies (CLST), Division of Genomic Technologies, RIKEN Yokohama Institute, Tsurumi-ku, Yokohama, 230-0045, Japan', 'institution_ids': []}, {'raw_affiliation_string': 'RIKEN Omics Science Center1‡, Yokohama, Kanagawa, 230-0045, Japan', 'institution_ids': ['https://openalex.org/I4210150921']}, {'raw_affiliation_string': 'RIKEN Preventive Medicine and Diagnosis Innovation Program, Wako, Saitama 351-0198, Japan', 'institution_ids': ['https://openalex.org/I4210110652']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5072131150', 'display_name': 'Piero Carninci', 'orcid': 'https://orcid.org/0000-0001-7202-7243'}, 'institutions': [{'id': 'https://openalex.org/I4210150921', 'display_name': 'RIKEN Center for Integrative Medical Sciences', 'ror': 'https://ror.org/04mb6s476', 'country_code': 'JP', 'type': 'facility', 'lineage': ['https://openalex.org/I4210110652', 'https://openalex.org/I4210150921']}], 'countries': ['JP'], 'is_corresponding': False, 'raw_author_name': 'Piero Carninci', 'raw_affiliation_strings': ['RIKEN Center for Life Science Technologies (CLST), Division of Genomic Technologies, RIKEN Yokohama Institute, Tsurumi-ku, Yokohama, 230-0045, Japan', 'RIKEN Omics Science Center1‡, Yokohama, Kanagawa, 230-0045, Japan'], 'affiliations': [{'raw_affiliation_string': 'RIKEN Omics Science Center1‡, Yokohama, Kanagawa, 230-0045, Japan', 'institution_ids': ['https://openalex.org/I4210150921']}, {'raw_affiliation_string': 'RIKEN Center for Life Science Technologies (CLST), Division of Genomic Technologies, RIKEN Yokohama Institute, Tsurumi-ku, Yokohama, 230-0045, Japan', 'institution_ids': []}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5066740737', 'display_name': 'Alistair R. R. Forrest', 'orcid': 'https://orcid.org/0000-0003-4543-1675'}, 'institutions': [{'id': 'https://openalex.org/I4210150921', 'display_name': 'RIKEN Center for Integrative Medical Sciences', 'ror': 'https://ror.org/04mb6s476', 'country_code': 'JP', 'type': 'facility', 'lineage': ['https://openalex.org/I4210110652', 'https://openalex.org/I4210150921']}], 'countries': ['JP'], 'is_corresponding': False, 'raw_author_name': 'Alistair\xa0R.\xa0R. Forrest', 'raw_affiliation_strings': ['RIKEN Center for Life Science Technologies (CLST), Division of Genomic Technologies, RIKEN Yokohama Institute, Tsurumi-ku, Yokohama, 230-0045, Japan', 'RIKEN Omics Science Center1‡, Yokohama, Kanagawa, 230-0045, Japan'], 'affiliations': [{'raw_affiliation_string': 'RIKEN Omics Science Center1‡, Yokohama, Kanagawa, 230-0045, Japan', 'institution_ids': ['https://openalex.org/I4210150921']}, {'raw_affiliation_string': 'RIKEN Center for Life Science Technologies (CLST), Division of Genomic Technologies, RIKEN Yokohama Institute, Tsurumi-ku, Yokohama, 230-0045, Japan', 'institution_ids': []}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5062848384', 'display_name': 'the FANTOM consortium', 'orcid': None}, 'institutions': [{'id': 'https://openalex.org/I4210150921', 'display_name': 'RIKEN Center for Integrative Medical Sciences', 'ror': 'https://ror.org/04mb6s476', 'country_code': 'JP', 'type': 'facility', 'lineage': ['https://openalex.org/I4210110652', 'https://openalex.org/I4210150921']}], 'countries': ['JP'], 'is_corresponding': False, 'raw_author_name': 'The FANTOM\xa0Consortium', 'raw_affiliation_strings': ['RIKEN Center for Life Science Technologies (CLST), Division of Genomic Technologies, RIKEN Yokohama Institute, Tsurumi-ku, Yokohama, 230-0045, Japan', 'RIKEN Omics Science Center1‡, Yokohama, Kanagawa, 230-0045, Japan'], 'affiliations': [{'raw_affiliation_string': 'RIKEN Center for Life Science Technologies (CLST), Division of Genomic Technologies, RIKEN Yokohama Institute, Tsurumi-ku, Yokohama, 230-0045, Japan', 'institution_ids': []}, {'raw_affiliation_string': 'RIKEN Omics Science Center1‡, Yokohama, Kanagawa, 230-0045, Japan', 'institution_ids': ['https://openalex.org/I4210150921']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5107344146', 'display_name': 'Yoshihide Hayashizaki', 'orcid': None}, 'institutions': [{'id': 'https://openalex.org/I4210110652', 'display_name': 'RIKEN', 'ror': 'https://ror.org/01sjwvz98', 'country_code': 'JP', 'type': 'facility', 'lineage': ['https://openalex.org/I4210110652']}, {'id': 'https://openalex.org/I4210150921', 'display_name': 'RIKEN Center for Integrative Medical Sciences', 'ror': 'https://ror.org/04mb6s476', 'country_code': 'JP', 'type': 'facility', 'lineage': ['https://openalex.org/I4210110652', 'https://openalex.org/I4210150921']}], 'countries': ['JP'], 'is_corresponding': False, 'raw_author_name': 'Yoshihide Hayashizaki', 'raw_affiliation_strings': ['RIKEN Omics Science Center1‡, Yokohama, Kanagawa, 230-0045, Japan', 'RIKEN Preventive Medicine and Diagnosis Innovation Program, Wako, Saitama 351-0198, Japan'], 'affiliations': [{'raw_affiliation_string': 'RIKEN Preventive Medicine and Diagnosis Innovation Program, Wako, Saitama 351-0198, Japan', 'institution_ids': ['https://openalex.org/I4210110652']}, {'raw_affiliation_string': 'RIKEN Omics Science Center1‡, Yokohama, Kanagawa, 230-0045, Japan', 'institution_ids': ['https://openalex.org/I4210150921']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5060241561', 'display_name': 'Mathias Uhlén', 'orcid': 'https://orcid.org/0000-0002-4858-8056'}, 'institutions': [{'id': 'https://openalex.org/I86987016', 'display_name': 'KTH Royal Institute of Technology', 'ror': 'https://ror.org/026vcq606', 'country_code': 'SE', 'type': 'education', 'lineage': ['https://openalex.org/I86987016']}, {'id': 'https://openalex.org/I2800139495', 'display_name': 'Science for Life Laboratory', 'ror': 'https://ror.org/04ev03g22', 'country_code': 'SE', 'type': 'facility', 'lineage': ['https://openalex.org/I2800139495']}], 'countries': ['SE'], 'is_corresponding': False, 'raw_author_name': 'Mathias Uhlén', 'raw_affiliation_strings': ['Science for Life Laboratory, KTH-Royal Institute of Technology, Solna, 17121, Sweden'], 'affiliations': [{'raw_affiliation_string': 'Science for Life Laboratory, KTH-Royal Institute of Technology, Solna, 17121, Sweden', 'institution_ids': ['https://openalex.org/I86987016', 'https://openalex.org/I2800139495']}]}, {'author_position': 'last', 'author': {'id': 'https://openalex.org/A5082300031', 'display_name': 'Carsten O. Daub', 'orcid': 'https://orcid.org/0000-0002-3295-8729'}, 'institutions': [{'id': 'https://openalex.org/I28166907', 'display_name': 'Karolinska Institutet', 'ror': 'https://ror.org/056d84691', 'country_code': 'SE', 'type': 'education', 'lineage': ['https://openalex.org/I28166907']}, {'id': 'https://openalex.org/I2800139495', 'display_name': 'Science for Life Laboratory', 'ror': 'https://ror.org/04ev03g22', 'country_code': 'SE', 'type': 'facility', 'lineage': ['https://openalex.org/I2800139495']}, {'id': 'https://openalex.org/I4210150921', 'display_name': 'RIKEN Center for Integrative Medical Sciences', 'ror': 'https://ror.org/04mb6s476', 'country_code': 'JP', 'type': 'facility', 'lineage': ['https://openalex.org/I4210110652', 'https://openalex.org/I4210150921']}], 'countries': ['JP', 'SE'], 'is_corresponding': True, 'raw_author_name': 'Carsten O. Daub', 'raw_affiliation_strings': ['Department of Biosciences and Nutrition, Karolinska Institute, Huddinge, 14183, Sweden', 'RIKEN Center for Life Science Technologies (CLST), Division of Genomic Technologies, RIKEN Yokohama Institute, Tsurumi-ku, Yokohama, 230-0045, Japan', 'RIKEN Omics Science Center1‡, Yokohama, Kanagawa, 230-0045, Japan', 'Science for Life Laboratory, Karolinska Institute, Solna, 17121, Sweden'], 'affiliations': [{'raw_affiliation_string': 'Department of Biosciences and Nutrition, Karolinska Institute, Huddinge, 14183, Sweden', 'institution_ids': ['https://openalex.org/I28166907']}, {'raw_affiliation_string': 'Science for Life Laboratory, Karolinska Institute, Solna, 17121, Sweden', 'institution_ids': ['https://openalex.org/I2800139495', 'https://openalex.org/I28166907']}, {'raw_affiliation_string': 'RIKEN Center for Life Science Technologies (CLST), Division of Genomic Technologies, RIKEN Yokohama Institute, Tsurumi-ku, Yokohama, 230-0045, Japan', 'institution_ids': []}, {'raw_affiliation_string': 'RIKEN Omics Science Center1‡, Yokohama, Kanagawa, 230-0045, Japan', 'institution_ids': ['https://openalex.org/I4210150921']}]}], 'institution_assertions': [], 'countries_distinct_count': 2, 'institutions_distinct_count': 6, 'corresponding_author_ids': ['https://openalex.org/A5082300031'], 'corresponding_institution_ids': ['https://openalex.org/I28166907', 'https://openalex.org/I2800139495', 'https://openalex.org/I4210150921'], 'apc_list': {'value': 3630, 'currency': 'USD', 'value_usd': 3630, 'provenance': 'doaj'}, 'apc_paid': {'value': 3630, 'currency': 'USD', 'value_usd': 3630, 'provenance': 'doaj'}, 'fwci': 3.034, 'has_fulltext': True, 'fulltext_origin': 'ngrams', 'cited_by_count': 113, 'citation_normalized_percentile': {'value': 0.856575, 'is_in_top_1_percent': False, 'is_in_top_10_percent': False}, 'cited_by_percentile_year': {'min': 98, 'max': 99}, 'biblio': {'volume': '43', 'issue': '14', 'first_page': '6787', 'last_page': '6798'}, 'is_retracted': False, 'is_paratext': False, 'primary_topic': {'id': 'https://openalex.org/T11482', 'display_name': 'RNA modifications and cancer', 'score': 0.9993, 'subfield': {'id': 'https://openalex.org/subfields/1312', 'display_name': 'Molecular Biology'}, 'field': {'id': 'https://openalex.org/fields/13', 'display_name': 'Biochemistry, Genetics and Molecular Biology'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}, 'topics': [{'id': 'https://openalex.org/T11482', 'display_name': 'RNA modifications and cancer', 'score': 0.9993, 'subfield': {'id': 'https://openalex.org/subfields/1312', 'display_name': 'Molecular Biology'}, 'field': {'id': 'https://openalex.org/fields/13', 'display_name': 'Biochemistry, Genetics and Molecular Biology'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}, {'id': 'https://openalex.org/T11970', 'display_name': 'Molecular Biology Techniques and Applications', 'score': 0.999, 'subfield': {'id': 'https://openalex.org/subfields/1312', 'display_name': 'Molecular Biology'}, 'field': {'id': 'https://openalex.org/fields/13', 'display_name': 'Biochemistry, Genetics and Molecular Biology'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}, {'id': 'https://openalex.org/T11289', 'display_name': 'Single-cell and spatial transcriptomics', 'score': 0.9978, 'subfield': {'id': 'https://openalex.org/subfields/1312', 'display_name': 'Molecular Biology'}, 'field': {'id': 'https://openalex.org/fields/13', 'display_name': 'Biochemistry, Genetics and Molecular Biology'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}], 'keywords': [{'id': 'https://openalex.org/keywords/human-protein-atlas', 'display_name': 'Human Protein Atlas', 'score': 0.61342084}, {'id': 'https://openalex.org/keywords/rna-seq', 'display_name': 'RNA-Seq', 'score': 0.556935}], 'concepts': [{'id': 'https://openalex.org/C162317418', 'wikidata': 'https://www.wikidata.org/wiki/Q252857', 'display_name': 'Transcriptome', 'level': 4, 'score': 0.89283395}, {'id': 'https://openalex.org/C86803240', 'wikidata': 'https://www.wikidata.org/wiki/Q420', 'display_name': 'Biology', 'level': 0, 'score': 0.87337303}, {'id': 'https://openalex.org/C104317684', 'wikidata': 'https://www.wikidata.org/wiki/Q7187', 'display_name': 'Gene', 'level': 2, 'score': 0.6362028}, {'id': 'https://openalex.org/C158163496', 'wikidata': 'https://www.wikidata.org/wiki/Q5937310', 'display_name': 'Human Protein Atlas', 'level': 4, 'score': 0.61342084}, {'id': 'https://openalex.org/C18431079', 'wikidata': 'https://www.wikidata.org/wiki/Q1502169', 'display_name': 'Gene expression profiling', 'level': 4, 'score': 0.61297524}, {'id': 'https://openalex.org/C70721500', 'wikidata': 'https://www.wikidata.org/wiki/Q177005', 'display_name': 'Computational biology', 'level': 1, 'score': 0.57536995}, {'id': 'https://openalex.org/C107397762', 'wikidata': 'https://www.wikidata.org/wiki/Q2542347', 'display_name': 'RNA-Seq', 'level': 5, 'score': 0.556935}, {'id': 'https://openalex.org/C54355233', 'wikidata': 'https://www.wikidata.org/wiki/Q7162', 'display_name': 'Genetics', 'level': 1, 'score': 0.5170182}, {'id': 'https://openalex.org/C150194340', 'wikidata': 'https://www.wikidata.org/wiki/Q26972', 'display_name': 'Gene expression', 'level': 3, 'score': 0.5001173}, {'id': 'https://openalex.org/C197077220', 'wikidata': 'https://www.wikidata.org/wiki/Q720988', 'display_name': 'Human genome', 'level': 4, 'score': 0.4155593}, {'id': 'https://openalex.org/C141231307', 'wikidata': 'https://www.wikidata.org/wiki/Q7020', 'display_name': 'Genome', 'level': 3, 'score': 0.40530783}, {'id': 'https://openalex.org/C6856738', 'wikidata': 'https://www.wikidata.org/wiki/Q331672', 'display_name': 'Protein expression', 'level': 3, 'score': 0.14106}], 'mesh': [{'descriptor_ui': 'D020869', 'descriptor_name': 'Gene Expression Profiling', 'qualifier_ui': 'Q000379', 'qualifier_name': 'methods', 'is_major_topic': True}, {'descriptor_ui': 'D017423', 'descriptor_name': 'Sequence Analysis, RNA', 'qualifier_ui': 'Q000379', 'qualifier_name': 'methods', 'is_major_topic': True}, {'descriptor_ui': 'D030562', 'descriptor_name': 'Databases, Protein', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D020869', 'descriptor_name': 'Gene Expression Profiling', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D023281', 'descriptor_name': 'Genomics', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D023281', 'descriptor_name': 'Genomics', 'qualifier_ui': 'Q000379', 'qualifier_name': 'methods', 'is_major_topic': False}, {'descriptor_ui': 'D006801', 'descriptor_name': 'Humans', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D007150', 'descriptor_name': 'Immunohistochemistry', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D058977', 'descriptor_name': 'Molecular Sequence Annotation', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D020543', 'descriptor_name': 'Proteome', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D020543', 'descriptor_name': 'Proteome', 'qualifier_ui': 'Q000378', 'qualifier_name': 'metabolism', 'is_major_topic': False}, {'descriptor_ui': 'D017423', 'descriptor_name': 'Sequence Analysis, RNA', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D014018', 'descriptor_name': 'Tissue Distribution', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}], 'locations_count': 5, 'locations': [{'is_oa': True, 'landing_page_url': 'https://doi.org/10.1093/nar/gkv608', 'pdf_url': 'https://academic.oup.com/nar/article-pdf/43/14/6787/16659651/gkv608.pdf', 'source': {'id': 'https://openalex.org/S134668137', 'display_name': 'Nucleic Acids Research', 'issn_l': '0305-1048', 'issn': ['0305-1048', '1362-4954', '1362-4962'], 'is_oa': True, 'is_in_doaj': True, 'is_core': True, 'host_organization': 'https://openalex.org/P4310311648', 'host_organization_name': 'Oxford University Press', 'host_organization_lineage': ['https://openalex.org/P4310311647', 'https://openalex.org/P4310311648'], 'host_organization_lineage_names': ['University of Oxford', 'Oxford University Press'], 'type': 'journal'}, 'license': 'cc-by', 'license_id': 'https://openalex.org/licenses/cc-by', 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, {'is_oa': True, 'landing_page_url': 'https://europepmc.org/articles/pmc4538815', 'pdf_url': 'https://europepmc.org/articles/pmc4538815?pdf=render', 'source': {'id': 'https://openalex.org/S4306400806', 'display_name': 'Europe PMC (PubMed Central)', 'issn_l': None, 'issn': None, 'is_oa': True, 'is_in_doaj': False, 'is_core': False, 'host_organization': 'https://openalex.org/I1303153112', 'host_organization_name': 'European Bioinformatics Institute', 'host_organization_lineage': ['https://openalex.org/I1303153112'], 'host_organization_lineage_names': ['European Bioinformatics Institute'], 'type': 'repository'}, 'license': 'cc-by', 'license_id': 'https://openalex.org/licenses/cc-by', 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, {'is_oa': True, 'landing_page_url': 'http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-263457', 'pdf_url': 'https://uu.diva-portal.org/smash/get/diva2:859214/FULLTEXT01', 'source': {'id': 'https://openalex.org/S4306401559', 'display_name': 'KTH Publication Database DiVA (KTH Royal Institute of Technology)', 'issn_l': None, 'issn': None, 'is_oa': True, 'is_in_doaj': False, 'is_core': False, 'host_organization': None, 'host_organization_name': None, 'host_organization_lineage': [], 'host_organization_lineage_names': [], 'type': 'repository'}, 'license': 'other-oa', 'license_id': 'https://openalex.org/licenses/other-oa', 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, {'is_oa': True, 'landing_page_url': 'https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4538815', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S2764455111', 'display_name': 'PubMed Central', 'issn_l': None, 'issn': None, 'is_oa': True, 'is_in_doaj': False, 'is_core': False, 'host_organization': 'https://openalex.org/I1299303238', 'host_organization_name': 'National Institutes of Health', 'host_organization_lineage': ['https://openalex.org/I1299303238'], 'host_organization_lineage_names': ['National Institutes of Health'], 'type': 'repository'}, 'license': None, 'license_id': None, 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, {'is_oa': False, 'landing_page_url': 'https://pubmed.ncbi.nlm.nih.gov/26117540', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S4306525036', 'display_name': 'PubMed', 'issn_l': None, 'issn': None, 'is_oa': False, 'is_in_doaj': False, 'is_core': False, 'host_organization': 'https://openalex.org/I1299303238', 'host_organization_name': 'National Institutes of Health', 'host_organization_lineage': ['https://openalex.org/I1299303238'], 'host_organization_lineage_names': ['National Institutes of Health'], 'type': 'repository'}, 'license': None, 'license_id': None, 'version': None, 'is_accepted': False, 'is_published': False}], 'best_oa_location': {'is_oa': True, 'landing_page_url': 'https://doi.org/10.1093/nar/gkv608', 'pdf_url': 'https://academic.oup.com/nar/article-pdf/43/14/6787/16659651/gkv608.pdf', 'source': {'id': 'https://openalex.org/S134668137', 'display_name': 'Nucleic Acids Research', 'issn_l': '0305-1048', 'issn': ['0305-1048', '1362-4954', '1362-4962'], 'is_oa': True, 'is_in_doaj': True, 'is_core': True, 'host_organization': 'https://openalex.org/P4310311648', 'host_organization_name': 'Oxford University Press', 'host_organization_lineage': ['https://openalex.org/P4310311647', 'https://openalex.org/P4310311648'], 'host_organization_lineage_names': ['University of Oxford', 'Oxford University Press'], 'type': 'journal'}, 'license': 'cc-by', 'license_id': 'https://openalex.org/licenses/cc-by', 'version': 'publishedVersion', 'is_accepted': True, 'is_published': True}, 'sustainable_development_goals': [], 'grants': [], 'datasets': [], 'versions': [], 'referenced_works_count': 43, 'referenced_works': ['https://openalex.org/W1652280537', 'https://openalex.org/W1963740134', 'https://openalex.org/W1965100590', 'https://openalex.org/W1968399600', 'https://openalex.org/W1970156673', 'https://openalex.org/W1973268693', 'https://openalex.org/W1986223165', 'https://openalex.org/W1991961848', 'https://openalex.org/W2000189769', 'https://openalex.org/W2012034410', 'https://openalex.org/W2015845481', 'https://openalex.org/W2016613831', 'https://openalex.org/W2018838463', 'https://openalex.org/W2034578963', 'https://openalex.org/W2039261408', 'https://openalex.org/W2041281952', 'https://openalex.org/W2056499061', 'https://openalex.org/W2056710301', 'https://openalex.org/W2058320302', 'https://openalex.org/W2061747833', 'https://openalex.org/W2069860553', 'https://openalex.org/W2073380432', 'https://openalex.org/W2094953050', 'https://openalex.org/W2097065948', 'https://openalex.org/W2114703458', 'https://openalex.org/W2124075935', 'https://openalex.org/W2129097232', 'https://openalex.org/W2132352688', 'https://openalex.org/W2139581609', 'https://openalex.org/W2141371454', 'https://openalex.org/W2141458291', 'https://openalex.org/W2143965359', 'https://openalex.org/W2146975379', 'https://openalex.org/W2148927308', 'https://openalex.org/W2154431984', 'https://openalex.org/W2158948118', 'https://openalex.org/W2159091439', 'https://openalex.org/W2163741321', 'https://openalex.org/W2164683872', 'https://openalex.org/W2164919137', 'https://openalex.org/W2167898988', 'https://openalex.org/W3102165426', 'https://openalex.org/W4210767115'], 'related_works': ['https://openalex.org/W4377231761', 'https://openalex.org/W4362530199', 'https://openalex.org/W4362512073', 'https://openalex.org/W4362511917', 'https://openalex.org/W4362511560', 'https://openalex.org/W4362485908', 'https://openalex.org/W4285162488', 'https://openalex.org/W2904597490', 'https://openalex.org/W2268123450', 'https://openalex.org/W2093288248'], 'abstract_inverted_index': {'Understanding': [0], 'the': [1, 21, 26, 48, 69, 84, 105, 113, 127, 145, 152], 'normal': [2], 'state': [3], 'of': [4, 101, 123], 'human': [5, 36], 'tissue': [6, 13, 52, 129, 138, 159, 168, 185], 'transcriptome': [7, 33, 53, 169], 'profiles': [8], 'is': [9, 194], 'essential': [10], 'for': [11, 35, 97, 175, 197, 201], 'recognizing': [12], 'disease': [14, 18], 'states': [15], 'and': [16, 25, 41, 166, 180], 'identifying': [17], 'markers.': [19], 'Recently,': [20], 'Human': [22], 'Protein': [23], 'Atlas': [24], 'FANTOM5': [27], 'consortium': [28], 'have': [29], 'each': [30, 158], 'published': [31], 'extensive': [32], 'data': [34, 86, 147, 170, 193], 'samples': [37], 'using': [38], 'Illumina-sequenced': [39], 'RNA-Seq': [40, 165], 'Heliscope-sequenced': [42], 'CAGE.': [43], 'Here,': [44], 'we': [45], 'report': [46], 'on': [47, 151], 'first': [49], 'large-scale': [50], 'complex': [51], 'comparison': [54], 'between': [55, 68], 'full-length': [56], 'versus': [57], "5'-capped": [58], 'mRNA': [59], 'sequencing': [60], 'data.': [61], 'Overall': [62], 'gene': [63, 110, 177], 'expression': [64, 142, 192, 199], 'correlation': [65, 91], 'was': [66], 'high': [67, 89, 141], '22': [70], 'corresponding': [71], 'tissues': [72], 'analyzed': [73], '(R': [74], '>': [75], '0.8).': [76], 'For': [77], 'genes': [78, 103], 'ubiquitously': [79], 'expressed': [80], 'across': [81], 'all': [82], 'tissues,': [83], 'two': [85], 'sets': [87, 171], 'showed': [88, 121], 'genome-wide': [90], '(91%': [92], 'agreement),': [93], 'with': [94, 189], 'differences': [95], 'observed': [96], 'a': [98], 'small': [99], 'number': [100], 'individual': [102], 'indicating': [104], 'need': [106], 'to': [107, 119], 'update': [108], 'their': [109], 'models.': [111], 'Among': [112], 'identified': [114], 'single-tissue': [115], 'enriched': [116], 'genes,': [117], 'up': [118], '75%': [120], 'consensus': [122], '7-fold': [124], 'enrichment': [125, 139], 'in': [126, 130, 144, 157], 'same': [128], 'both': [131], 'methods,': [132], 'while': [133], 'another': [134], '17%': [135], 'exhibited': [136], 'multiple': [137], 'and/or': [140], 'variety': [143], 'other': [146], 'set,': [148], 'likely': [149], 'dependent': [150], 'cell': [153], 'type': [154], 'proportions': [155], 'included': [156], 'sample.': [160], 'Our': [161], 'results': [162], 'show': [163], 'that': [164], 'CAGE': [167], 'are': [172], 'highly': [173, 195], 'complementary': [174], 'improving': [176], 'model': [178], 'annotations': [179], 'highlight': [181], 'biological': [182], 'complexities': [183], 'within': [184], 'transcriptomes.': [186], 'Furthermore,': [187], 'integration': [188], 'image-based': [190], 'protein': [191], 'advantageous': [196], 'understanding': [198], 'specificities': [200], 'many': [202], 'genes.': [203]}, 'cited_by_api_url': 'https://api.openalex.org/works?filter=cites:W1936255372', 'counts_by_year': [{'year': 2024, 'cited_by_count': 13}, {'year': 2023, 'cited_by_count': 13}, {'year': 2022, 'cited_by_count': 15}, {'year': 2021, 'cited_by_count': 16}, {'year': 2020, 'cited_by_count': 19}, {'year': 2019, 'cited_by_count': 12}, {'year': 2018, 'cited_by_count': 8}, {'year': 2017, 'cited_by_count': 12}, {'year': 2016, 'cited_by_count': 4}], 'updated_date': '2024-12-17T18:25:35.587713', 'created_date': '2016-06-24'}