Title: Genealogy and palaeodrainage basins in Yunnan Province: phylogeography of the Yunnan spiny frog, Nanorana yunnanensis (Dicroglossidae)
Abstract: Molecular EcologyVolume 19, Issue 16 p. 3406-3420 Genealogy and palaeodrainage basins in Yunnan Province: phylogeography of the Yunnan spiny frog, Nanorana yunnanensis (Dicroglossidae) DONG-RU ZHANG, DONG-RU ZHANG State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China These authors contributed equally.Search for more papers by this authorMING-YONG CHEN, MING-YONG CHEN State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China College of Life Sciences, Yunnan University, Kunming 650091, China Institute of National Nature Reserves, the Dai Nationality Autonomous Prefecture, Xishuangbanna 666100, China These authors contributed equally.Search for more papers by this authorROBERT W. MURPHY, ROBERT W. MURPHY State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China Centre for Biodiversity and Conservation Biology, Royal Ontario Museum, 100 Queen's Park, Toronto, Ont., M5S 2C6, CanadaSearch for more papers by this authorJING CHE, JING CHE State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, ChinaSearch for more papers by this authorJUN-FENG PANG, JUN-FENG PANG State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, ChinaSearch for more papers by this authorJIAN-SHENG HU, JIAN-SHENG HU College of Life Sciences, Yunnan University, Kunming 650091, ChinaSearch for more papers by this authorJING LUO, JING LUO College of Life Sciences, Yunnan University, Kunming 650091, China Laboratory for Conservation and Utilization of Bio-resources, Yunnan University, Kunming 650091, ChinaSearch for more papers by this authorSHAN-JIN WU, SHAN-JIN WU State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China Sichuan Key Laboratory of Conservation Biology on Endangered Wildlife, College of Life Science, Sichuan University, Chengdu 610064, ChinaSearch for more papers by this authorHUI YE, HUI YE College of Life Sciences, Yunnan University, Kunming 650091, ChinaSearch for more papers by this authorYA-PING ZHANG, YA-PING ZHANG State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China Laboratory for Conservation and Utilization of Bio-resources, Yunnan University, Kunming 650091, ChinaSearch for more papers by this author DONG-RU ZHANG, DONG-RU ZHANG State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China These authors contributed equally.Search for more papers by this authorMING-YONG CHEN, MING-YONG CHEN State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China College of Life Sciences, Yunnan University, Kunming 650091, China Institute of National Nature Reserves, the Dai Nationality Autonomous Prefecture, Xishuangbanna 666100, China These authors contributed equally.Search for more papers by this authorROBERT W. MURPHY, ROBERT W. MURPHY State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China Centre for Biodiversity and Conservation Biology, Royal Ontario Museum, 100 Queen's Park, Toronto, Ont., M5S 2C6, CanadaSearch for more papers by this authorJING CHE, JING CHE State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, ChinaSearch for more papers by this authorJUN-FENG PANG, JUN-FENG PANG State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, ChinaSearch for more papers by this authorJIAN-SHENG HU, JIAN-SHENG HU College of Life Sciences, Yunnan University, Kunming 650091, ChinaSearch for more papers by this authorJING LUO, JING LUO College of Life Sciences, Yunnan University, Kunming 650091, China Laboratory for Conservation and Utilization of Bio-resources, Yunnan University, Kunming 650091, ChinaSearch for more papers by this authorSHAN-JIN WU, SHAN-JIN WU State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China Sichuan Key Laboratory of Conservation Biology on Endangered Wildlife, College of Life Science, Sichuan University, Chengdu 610064, ChinaSearch for more papers by this authorHUI YE, HUI YE College of Life Sciences, Yunnan University, Kunming 650091, ChinaSearch for more papers by this authorYA-PING ZHANG, YA-PING ZHANG State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China Laboratory for Conservation and Utilization of Bio-resources, Yunnan University, Kunming 650091, ChinaSearch for more papers by this author First published: 05 August 2010 https://doi.org/10.1111/j.1365-294X.2010.04747.xCitations: 52 Prof. Ya-Ping Zhang, Fax: 86-871-5195430; E-mail: [email protected] and Prof. Hui Ye, Fax: 86-871-5033724; E-mail: [email protected]. Read the full textAboutPDF ToolsRequest permissionExport citationAdd to favoritesTrack citation ShareShare Give accessShare full text accessShare full-text accessPlease review our Terms and Conditions of Use and check box below to share full-text version of article.I have read and accept the Wiley Online Library Terms and Conditions of UseShareable LinkUse the link below to share a full-text version of this article with your friends and colleagues. Learn more.Copy URL Share a linkShare onFacebookTwitterLinked InRedditWechat Abstract Historical drainage patterns adjacent to the Qinghai-Tibetan Plateau differed markedly from those of today. We examined the relationship between drainage history and geographic patterns of genetic variation in the Yunnan spiny frog, Nanorana yunnanensis, using approximately 981 base pairs of mitochondrial DNA partial sequences from protein-coding genes ND1 and ND2, and intervening areas including complete tRNAIle, tRNAGln and tRNAMet. Two null hypotheses were tested: (i) that genetic patterns do not correspond to the development of drainage systems and (ii) that populations had been stable and not experienced population expansion, bottlenecking and selection. Genealogical analyses identified three, major, well-supported maternal lineages, each of which had two sublineages. These divergent lineages were completely concordant with six geographical regions. Genetic structure and divergence were strongly congruent with historical rather than contemporary drainage patterns. Most lineages and sublineages were formed via population fragmentation during the rearrangement of paleodrainage basins in the Early Pliocene and Early Pleistocene. Sympatric lineages occurred only in localities at the boundaries of major drainages, likely reflecting secondary contact of previously allopatric populations. Extensive population expansion probably occurred early in the Middle Pleistocene accompanying dramatic climatic oscillations. Citing Literature Supporting Information Table S1 Voucher specimen numbers for each population. Acronyms are YU for College of Life Sciences, Yunnan University; SKLGRE for State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences; SCUM for Sichuan University Museum. Table S2 Pairwise FST values among the 71 populations of the Nanorana yunnanensis. Populations are numbered as in Table 1. Significant level set to P < 0.05 after 10 000 permutations. FST values are below diagonal, and P values are above diagonal, where '+' indicates significance and '−' P > 0.05. Fig. S1 Reconstruction of drainage basin history due to river capture/reversals of major rivers in eastern Tibet (from Clark et al. 2004). Colors represent individual drainage basins drawn on top of grayscale topography. (a) Interpreted pattern prior to the major captures, where the upper Yangtze, middle Yangtze, upper Mekong, upper Salween and the Tsangpo rivers drained together to the South China Sea through the paleo-Red River (blue). (b) Capture/reversal of the middle Yangtze River redirects drainage away from Red River and into the East China Sea through the lower Yangtze River (green). (c) Capture of the upper Yangtze River to the east into the lower Yangtze River, and the upper Mekong and upper Salween rivers obtain their modern drainage positions (green, yellow and orange, respectively). Capture of the Tsangpo River to the south through the Irrawaddy River (red). (d) Capture of the Tsangpo River through the Brahmaputra River into its modern course (pink). This final configuration is the modern drainage basin pattern. Fig. S2 Mismatch distributions for each major haplotype lineage and some sublineages of Nanorana yunnanensis. The abscissa shows the number of pairwise differences between compared haplotypes. The ordinate shows the frequency for each value. The histograms represent the observed frequencies of pairwise divergences among haplotypes and the line refers to the expectation under the model of population expansion. (a–i): Mismatch distributions for the lineages and sublineages W, W1,W2, C, C1, C2, E, E1 and E2, respectively. Please note: Wiley-Blackwell are not responsible for the content or functionality of any supporting materials supplied by the authors. Any queries (other than missing material) should be directed to the corresponding author for the article. Filename Description MEC_4747_sm_FigS1.tif14.4 MB Supporting info item MEC_4747_sm_FigS2.pdf36.8 KB Supporting info item MEC_4747_sm_TableS1.doc160 KB Supporting info item MEC_4747_sm_TableS2.xls96 KB Supporting info item Please note: The publisher is not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing content) should be directed to the corresponding author for the article. Volume19, Issue16August 2010Pages 3406-3420 RelatedInformation
Publication Year: 2010
Publication Date: 2010-07-26
Language: en
Type: article
Indexed In: ['crossref', 'pubmed']
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Cited By Count: 77
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