Publication Information

{'id': 'https://openalex.org/W1976150931', 'doi': 'https://doi.org/10.1039/c000396d', 'title': 'Complete genome sequence and comparative analysis of Shewanella violacea, a psychrophilic and piezophilic bacterium from deep sea floor sediments', 'display_name': 'Complete genome sequence and comparative analysis of Shewanella violacea, a psychrophilic and piezophilic bacterium from deep sea floor sediments', 'publication_year': 2010, 'publication_date': '2010-01-01', 'ids': {'openalex': 'https://openalex.org/W1976150931', 'doi': 'https://doi.org/10.1039/c000396d', 'mag': '1976150931', 'pmid': 'https://pubmed.ncbi.nlm.nih.gov/20458400'}, 'language': 'en', 'primary_location': {'is_oa': False, 'landing_page_url': 'https://doi.org/10.1039/c000396d', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S169293703', 'display_name': 'Molecular BioSystems', 'issn_l': '1742-2051', 'issn': ['1742-2051', '1742-206X'], 'is_oa': False, 'is_in_doaj': False, 'is_core': True, 'host_organization': 'https://openalex.org/P4310320556', 'host_organization_name': 'Royal Society of Chemistry', 'host_organization_lineage': ['https://openalex.org/P4310320556'], 'host_organization_lineage_names': ['Royal Society of Chemistry'], 'type': 'journal'}, 'license': None, 'license_id': None, 'version': None, 'is_accepted': False, 'is_published': False}, 'type': 'article', 'type_crossref': 'journal-article', 'indexed_in': ['crossref', 'pubmed'], 'open_access': {'is_oa': False, 'oa_status': 'closed', 'oa_url': None, 'any_repository_has_fulltext': False}, 'authorships': [{'author_position': 'first', 'author': {'id': 'https://openalex.org/A5068471808', 'display_name': 'Eiji Aono', 'orcid': None}, 'institutions': [{'id': 'https://openalex.org/I75917431', 'display_name': 'Nara Institute of Science and Technology', 'ror': 'https://ror.org/05bhada84', 'country_code': 'JP', 'type': 'education', 'lineage': ['https://openalex.org/I75917431']}], 'countries': ['JP'], 'is_corresponding': False, 'raw_author_name': 'Eiji Aono', 'raw_affiliation_strings': ['Graduate School of Biological Sciences Nara Institute of Science and Technology Ikoma Nara Japan'], 'affiliations': [{'raw_affiliation_string': 'Graduate School of Biological Sciences Nara Institute of Science and Technology Ikoma Nara Japan', 'institution_ids': ['https://openalex.org/I75917431']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5089253858', 'display_name': 'Tomoya Baba', 'orcid': 'https://orcid.org/0000-0001-8986-5905'}, 'institutions': [{'id': 'https://openalex.org/I203951103', 'display_name': 'Keio University', 'ror': 'https://ror.org/02kn6nx58', 'country_code': 'JP', 'type': 'education', 'lineage': ['https://openalex.org/I203951103']}], 'countries': ['JP'], 'is_corresponding': False, 'raw_author_name': 'Tomoya Baba', 'raw_affiliation_strings': ['Institute of Advanced Biosciences, Keio University, 403-1 Tsuruoka, Yamagata 997-0017, Japan'], 'affiliations': [{'raw_affiliation_string': 'Institute of Advanced Biosciences, Keio University, 403-1 Tsuruoka, Yamagata 997-0017, Japan', 'institution_ids': ['https://openalex.org/I203951103']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5063724667', 'display_name': 'Takeshi Ara', 'orcid': 'https://orcid.org/0000-0003-1754-2837'}, 'institutions': [{'id': 'https://openalex.org/I203951103', 'display_name': 'Keio University', 'ror': 'https://ror.org/02kn6nx58', 'country_code': 'JP', 'type': 'education', 'lineage': ['https://openalex.org/I203951103']}], 'countries': ['JP'], 'is_corresponding': False, 'raw_author_name': 'Takeshi Ara', 'raw_affiliation_strings': ['Institute of Advanced Biosciences, Keio University, 403-1 Tsuruoka, Yamagata 997-0017, Japan'], 'affiliations': [{'raw_affiliation_string': 'Institute of Advanced Biosciences, Keio University, 403-1 Tsuruoka, Yamagata 997-0017, Japan', 'institution_ids': ['https://openalex.org/I203951103']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5020558060', 'display_name': 'Tatsunari Nishi', 'orcid': None}, 'institutions': [], 'countries': ['JP'], 'is_corresponding': False, 'raw_author_name': 'Tatsunari Nishi', 'raw_affiliation_strings': ['Genaris, Inc., Leading Venture Plaza 2-308, 75-1 Ono, Tsurumi,Yokohama 230-0046,Japan'], 'affiliations': [{'raw_affiliation_string': 'Genaris, Inc., Leading Venture Plaza 2-308, 75-1 Ono, Tsurumi,Yokohama 230-0046,Japan', 'institution_ids': []}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5024185378', 'display_name': 'Tomoko Nakamichi', 'orcid': None}, 'institutions': [{'id': 'https://openalex.org/I75917431', 'display_name': 'Nara Institute of Science and Technology', 'ror': 'https://ror.org/05bhada84', 'country_code': 'JP', 'type': 'education', 'lineage': ['https://openalex.org/I75917431']}], 'countries': ['JP'], 'is_corresponding': False, 'raw_author_name': 'Tomoko Nakamichi', 'raw_affiliation_strings': ['Graduate School of Biological Sciences Nara Institute of Science and Technology Ikoma Nara Japan'], 'affiliations': [{'raw_affiliation_string': 'Graduate School of Biological Sciences Nara Institute of Science and Technology Ikoma Nara Japan', 'institution_ids': ['https://openalex.org/I75917431']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5066050300', 'display_name': 'Eiji Inamoto', 'orcid': None}, 'institutions': [{'id': 'https://openalex.org/I75917431', 'display_name': 'Nara Institute of Science and Technology', 'ror': 'https://ror.org/05bhada84', 'country_code': 'JP', 'type': 'education', 'lineage': ['https://openalex.org/I75917431']}], 'countries': ['JP'], 'is_corresponding': False, 'raw_author_name': 'Eiji Inamoto', 'raw_affiliation_strings': ['Graduate School of Biological Sciences Nara Institute of Science and Technology Ikoma Nara Japan'], 'affiliations': [{'raw_affiliation_string': 'Graduate School of Biological Sciences Nara Institute of Science and Technology Ikoma Nara Japan', 'institution_ids': ['https://openalex.org/I75917431']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5026014915', 'display_name': 'Hiromi Toyonaga', 'orcid': None}, 'institutions': [{'id': 'https://openalex.org/I75917431', 'display_name': 'Nara Institute of Science and Technology', 'ror': 'https://ror.org/05bhada84', 'country_code': 'JP', 'type': 'education', 'lineage': ['https://openalex.org/I75917431']}], 'countries': ['JP'], 'is_corresponding': False, 'raw_author_name': 'Hiromi Toyonaga', 'raw_affiliation_strings': ['Graduate School of Biological Sciences Nara Institute of Science and Technology Ikoma Nara Japan'], 'affiliations': [{'raw_affiliation_string': 'Graduate School of Biological Sciences Nara Institute of Science and Technology Ikoma Nara Japan', 'institution_ids': ['https://openalex.org/I75917431']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5020317154', 'display_name': 'Miki Hasegawa', 'orcid': 'https://orcid.org/0000-0003-0082-2576'}, 'institutions': [{'id': 'https://openalex.org/I203951103', 'display_name': 'Keio University', 'ror': 'https://ror.org/02kn6nx58', 'country_code': 'JP', 'type': 'education', 'lineage': ['https://openalex.org/I203951103']}], 'countries': ['JP'], 'is_corresponding': False, 'raw_author_name': 'Miki Hasegawa', 'raw_affiliation_strings': ['Institute of Advanced Biosciences, Keio University, 403-1 Tsuruoka, Yamagata 997-0017, Japan'], 'affiliations': [{'raw_affiliation_string': 'Institute of Advanced Biosciences, Keio University, 403-1 Tsuruoka, Yamagata 997-0017, Japan', 'institution_ids': ['https://openalex.org/I203951103']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5003471499', 'display_name': 'Yuki Takai', 'orcid': 'https://orcid.org/0000-0001-6506-5313'}, 'institutions': [{'id': 'https://openalex.org/I203951103', 'display_name': 'Keio University', 'ror': 'https://ror.org/02kn6nx58', 'country_code': 'JP', 'type': 'education', 'lineage': ['https://openalex.org/I203951103']}], 'countries': ['JP'], 'is_corresponding': False, 'raw_author_name': 'Yuki Takai', 'raw_affiliation_strings': ['Institute of Advanced Biosciences, Keio University, 403-1 Tsuruoka, Yamagata 997-0017, Japan'], 'affiliations': [{'raw_affiliation_string': 'Institute of Advanced Biosciences, Keio University, 403-1 Tsuruoka, Yamagata 997-0017, Japan', 'institution_ids': ['https://openalex.org/I203951103']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5066663220', 'display_name': 'Yoshiko Okumura', 'orcid': None}, 'institutions': [{'id': 'https://openalex.org/I203951103', 'display_name': 'Keio University', 'ror': 'https://ror.org/02kn6nx58', 'country_code': 'JP', 'type': 'education', 'lineage': ['https://openalex.org/I203951103']}], 'countries': ['JP'], 'is_corresponding': False, 'raw_author_name': 'Yoshiko Okumura', 'raw_affiliation_strings': ['Institute of Advanced Biosciences, Keio University, 403-1 Tsuruoka, Yamagata 997-0017, Japan'], 'affiliations': [{'raw_affiliation_string': 'Institute of Advanced Biosciences, Keio University, 403-1 Tsuruoka, Yamagata 997-0017, Japan', 'institution_ids': ['https://openalex.org/I203951103']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5042793148', 'display_name': 'Miki Baba', 'orcid': None}, 'institutions': [{'id': 'https://openalex.org/I203951103', 'display_name': 'Keio University', 'ror': 'https://ror.org/02kn6nx58', 'country_code': 'JP', 'type': 'education', 'lineage': ['https://openalex.org/I203951103']}], 'countries': ['JP'], 'is_corresponding': False, 'raw_author_name': 'Miki Baba', 'raw_affiliation_strings': ['Institute of Advanced Biosciences, Keio University, 403-1 Tsuruoka, Yamagata 997-0017, Japan'], 'affiliations': [{'raw_affiliation_string': 'Institute of Advanced Biosciences, Keio University, 403-1 Tsuruoka, Yamagata 997-0017, Japan', 'institution_ids': ['https://openalex.org/I203951103']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5015575713', 'display_name': 'Masaru Tomita', 'orcid': 'https://orcid.org/0000-0003-3423-377X'}, 'institutions': [{'id': 'https://openalex.org/I203951103', 'display_name': 'Keio University', 'ror': 'https://ror.org/02kn6nx58', 'country_code': 'JP', 'type': 'education', 'lineage': ['https://openalex.org/I203951103']}], 'countries': ['JP'], 'is_corresponding': False, 'raw_author_name': 'Masaru Tomita', 'raw_affiliation_strings': ['Institute of Advanced Biosciences, Keio University, 403-1 Tsuruoka, Yamagata 997-0017, Japan'], 'affiliations': [{'raw_affiliation_string': 'Institute of Advanced Biosciences, Keio University, 403-1 Tsuruoka, Yamagata 997-0017, Japan', 'institution_ids': ['https://openalex.org/I203951103']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5041475133', 'display_name': 'Chiaki Kato', 'orcid': 'https://orcid.org/0000-0001-7964-9192'}, 'institutions': [{'id': 'https://openalex.org/I1315852903', 'display_name': 'Japan Agency for Marine-Earth Science and Technology', 'ror': 'https://ror.org/059qg2m13', 'country_code': 'JP', 'type': 'facility', 'lineage': ['https://openalex.org/I1315852903']}], 'countries': ['JP'], 'is_corresponding': False, 'raw_author_name': 'Chiaki Kato', 'raw_affiliation_strings': ['Marine Ecosystems Research Program, Japan Agency for Marine-Earth Science and Technology, 2-15 Natsushima-cho, Yokosuka,Kanagawa 237-0061,Japan'], 'affiliations': [{'raw_affiliation_string': 'Marine Ecosystems Research Program, Japan Agency for Marine-Earth Science and Technology, 2-15 Natsushima-cho, Yokosuka,Kanagawa 237-0061,Japan', 'institution_ids': ['https://openalex.org/I1315852903']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5102857228', 'display_name': 'Taku Oshima', 'orcid': 'https://orcid.org/0000-0002-0949-5543'}, 'institutions': [{'id': 'https://openalex.org/I75917431', 'display_name': 'Nara Institute of Science and Technology', 'ror': 'https://ror.org/05bhada84', 'country_code': 'JP', 'type': 'education', 'lineage': ['https://openalex.org/I75917431']}], 'countries': ['JP'], 'is_corresponding': False, 'raw_author_name': 'Taku Oshima', 'raw_affiliation_strings': ['Graduate School of Biological Sciences Nara Institute of Science and Technology Ikoma Nara Japan'], 'affiliations': [{'raw_affiliation_string': 'Graduate School of Biological Sciences Nara Institute of Science and Technology Ikoma Nara Japan', 'institution_ids': ['https://openalex.org/I75917431']}]}, {'author_position': 'middle', 'author': {'id': 'https://openalex.org/A5052235698', 'display_name': 'Kaoru Nakasone', 'orcid': None}, 'institutions': [{'id': 'https://openalex.org/I916559398', 'display_name': 'Kindai University', 'ror': 'https://ror.org/05kt9ap64', 'country_code': 'JP', 'type': 'education', 'lineage': ['https://openalex.org/I916559398']}], 'countries': ['JP'], 'is_corresponding': False, 'raw_author_name': 'Kaoru Nakasone', 'raw_affiliation_strings': ['Department of Biotechnology and Chemistry, School of Engineering, Kinki University, Higashihiroshima,Hiroshima 739-2116,Japan'], 'affiliations': [{'raw_affiliation_string': 'Department of Biotechnology and Chemistry, School of Engineering, Kinki University, Higashihiroshima,Hiroshima 739-2116,Japan', 'institution_ids': ['https://openalex.org/I916559398']}]}, {'author_position': 'last', 'author': {'id': 'https://openalex.org/A5039094403', 'display_name': 'Hirotada Mori', 'orcid': 'https://orcid.org/0000-0003-3855-778X'}, 'institutions': [{'id': 'https://openalex.org/I75917431', 'display_name': 'Nara Institute of Science and Technology', 'ror': 'https://ror.org/05bhada84', 'country_code': 'JP', 'type': 'education', 'lineage': ['https://openalex.org/I75917431']}, {'id': 'https://openalex.org/I203951103', 'display_name': 'Keio University', 'ror': 'https://ror.org/02kn6nx58', 'country_code': 'JP', 'type': 'education', 'lineage': ['https://openalex.org/I203951103']}], 'countries': ['JP'], 'is_corresponding': False, 'raw_author_name': 'Hirotada Mori', 'raw_affiliation_strings': ['Graduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma,Nara,Japan', 'Institute of Advanced Biosciences, Keio University, 403-1 Tsuruoka, Yamagata 997-0017, Japan'], 'affiliations': [{'raw_affiliation_string': 'Graduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma,Nara,Japan', 'institution_ids': ['https://openalex.org/I75917431']}, {'raw_affiliation_string': 'Institute of Advanced Biosciences, Keio University, 403-1 Tsuruoka, Yamagata 997-0017, Japan', 'institution_ids': ['https://openalex.org/I203951103']}]}], 'institution_assertions': [], 'countries_distinct_count': 1, 'institutions_distinct_count': 4, 'corresponding_author_ids': [], 'corresponding_institution_ids': [], 'apc_list': None, 'apc_paid': None, 'fwci': 2.563, 'has_fulltext': True, 'fulltext_origin': 'ngrams', 'cited_by_count': 45, 'citation_normalized_percentile': {'value': 0.902572, 'is_in_top_1_percent': False, 'is_in_top_10_percent': True}, 'cited_by_percentile_year': {'min': 94, 'max': 95}, 'biblio': {'volume': '6', 'issue': '7', 'first_page': '1216', 'last_page': '1216'}, 'is_retracted': False, 'is_paratext': False, 'primary_topic': {'id': 'https://openalex.org/T11791', 'display_name': 'Marine Microbial Diversity and Biogeography', 'score': 0.9982, 'subfield': {'id': 'https://openalex.org/subfields/2303', 'display_name': 'Ecology'}, 'field': {'id': 'https://openalex.org/fields/23', 'display_name': 'Environmental Science'}, 'domain': {'id': 'https://openalex.org/domains/3', 'display_name': 'Physical Sciences'}}, 'topics': [{'id': 'https://openalex.org/T11791', 'display_name': 'Marine Microbial Diversity and Biogeography', 'score': 0.9982, 'subfield': {'id': 'https://openalex.org/subfields/2303', 'display_name': 'Ecology'}, 'field': {'id': 'https://openalex.org/fields/23', 'display_name': 'Environmental Science'}, 'domain': {'id': 'https://openalex.org/domains/3', 'display_name': 'Physical Sciences'}}, {'id': 'https://openalex.org/T10995', 'display_name': 'Anaerobic Methane Oxidation and Gas Hydrates', 'score': 0.998, 'subfield': {'id': 'https://openalex.org/subfields/2304', 'display_name': 'Environmental Chemistry'}, 'field': {'id': 'https://openalex.org/fields/23', 'display_name': 'Environmental Science'}, 'domain': {'id': 'https://openalex.org/domains/3', 'display_name': 'Physical Sciences'}}, {'id': 'https://openalex.org/T11879', 'display_name': 'Global Diversity of Microbial Eukaryotes and Their Evolution', 'score': 0.9939, 'subfield': {'id': 'https://openalex.org/subfields/1312', 'display_name': 'Molecular Biology'}, 'field': {'id': 'https://openalex.org/fields/13', 'display_name': 'Biochemistry, Genetics and Molecular Biology'}, 'domain': {'id': 'https://openalex.org/domains/1', 'display_name': 'Life Sciences'}}], 'keywords': [{'id': 'https://openalex.org/keywords/shewanella-oneidensis', 'display_name': 'Shewanella oneidensis', 'score': 0.86914814}, {'id': 'https://openalex.org/keywords/psychrophile', 'display_name': 'Psychrophile', 'score': 0.7929746}, {'id': 'https://openalex.org/keywords/shewanella', 'display_name': 'Shewanella', 'score': 0.7563528}, {'id': 'https://openalex.org/keywords/environmental-dna-sequencing', 'display_name': 'Environmental DNA Sequencing', 'score': 0.525489}], 'concepts': [{'id': 'https://openalex.org/C2781170380', 'wikidata': 'https://www.wikidata.org/wiki/Q4049396', 'display_name': 'Shewanella oneidensis', 'level': 3, 'score': 0.86914814}, {'id': 'https://openalex.org/C22802001', 'wikidata': 'https://www.wikidata.org/wiki/Q913343', 'display_name': 'Psychrophile', 'level': 3, 'score': 0.7929746}, {'id': 'https://openalex.org/C2778824058', 'wikidata': 'https://www.wikidata.org/wiki/Q3243676', 'display_name': 'Shewanella', 'level': 3, 'score': 0.7563528}, {'id': 'https://openalex.org/C86803240', 'wikidata': 'https://www.wikidata.org/wiki/Q420', 'display_name': 'Biology', 'level': 0, 'score': 0.6934448}, {'id': 'https://openalex.org/C48743137', 'wikidata': 'https://www.wikidata.org/wiki/Q1783121', 'display_name': 'Organic matter', 'level': 2, 'score': 0.50065947}, {'id': 'https://openalex.org/C523546767', 'wikidata': 'https://www.wikidata.org/wiki/Q10876', 'display_name': 'Bacteria', 'level': 2, 'score': 0.43507603}, {'id': 'https://openalex.org/C59822182', 'wikidata': 'https://www.wikidata.org/wiki/Q441', 'display_name': 'Botany', 'level': 1, 'score': 0.36483327}, {'id': 'https://openalex.org/C55493867', 'wikidata': 'https://www.wikidata.org/wiki/Q7094', 'display_name': 'Biochemistry', 'level': 1, 'score': 0.35979044}, {'id': 'https://openalex.org/C89423630', 'wikidata': 'https://www.wikidata.org/wiki/Q7193', 'display_name': 'Microbiology', 'level': 1, 'score': 0.3390001}, {'id': 'https://openalex.org/C18903297', 'wikidata': 'https://www.wikidata.org/wiki/Q7150', 'display_name': 'Ecology', 'level': 1, 'score': 0.26450306}, {'id': 'https://openalex.org/C54355233', 'wikidata': 'https://www.wikidata.org/wiki/Q7162', 'display_name': 'Genetics', 'level': 1, 'score': 0.12819034}], 'mesh': [{'descriptor_ui': 'D016680', 'descriptor_name': 'Genome, Bacterial', 'qualifier_ui': 'Q000235', 'qualifier_name': 'genetics', 'is_major_topic': True}, {'descriptor_ui': 'D019015', 'descriptor_name': 'Geologic Sediments', 'qualifier_ui': 'Q000382', 'qualifier_name': 'microbiology', 'is_major_topic': True}, {'descriptor_ui': 'D012623', 'descriptor_name': 'Seawater', 'qualifier_ui': 'Q000382', 'qualifier_name': 'microbiology', 'is_major_topic': True}, {'descriptor_ui': 'D020592', 'descriptor_name': 'Shewanella', 'qualifier_ui': 'Q000235', 'qualifier_name': 'genetics', 'is_major_topic': True}, {'descriptor_ui': 'D000332', 'descriptor_name': 'Aerobiosis', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D001426', 'descriptor_name': 'Bacterial Proteins', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D001426', 'descriptor_name': 'Bacterial Proteins', 'qualifier_ui': 'Q000378', 'qualifier_name': 'metabolism', 'is_major_topic': False}, {'descriptor_ui': 'D001426', 'descriptor_name': 'Bacterial Proteins', 'qualifier_ui': 'Q000235', 'qualifier_name': 'genetics', 'is_major_topic': False}, {'descriptor_ui': 'D001483', 'descriptor_name': 'Base Sequence', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D002876', 'descriptor_name': 'Chromosomes, Bacterial', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D002876', 'descriptor_name': 'Chromosomes, Bacterial', 'qualifier_ui': 'Q000235', 'qualifier_name': 'genetics', 'is_major_topic': False}, {'descriptor_ui': 'D004269', 'descriptor_name': 'DNA, Bacterial', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D004269', 'descriptor_name': 'DNA, Bacterial', 'qualifier_ui': 'Q000737', 'qualifier_name': 'chemistry', 'is_major_topic': False}, {'descriptor_ui': 'D004269', 'descriptor_name': 'DNA, Bacterial', 'qualifier_ui': 'Q000235', 'qualifier_name': 'genetics', 'is_major_topic': False}, {'descriptor_ui': 'D004270', 'descriptor_name': 'DNA, Circular', 'qualifier_ui': 'Q000235', 'qualifier_name': 'genetics', 'is_major_topic': False}, {'descriptor_ui': 'D004270', 'descriptor_name': 'DNA, Circular', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D004270', 'descriptor_name': 'DNA, Circular', 'qualifier_ui': 'Q000737', 'qualifier_name': 'chemistry', 'is_major_topic': False}, {'descriptor_ui': 'D005618', 'descriptor_name': 'Fresh Water', 'qualifier_ui': 'Q000382', 'qualifier_name': 'microbiology', 'is_major_topic': False}, {'descriptor_ui': 'D005618', 'descriptor_name': 'Fresh Water', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D016680', 'descriptor_name': 'Genome, Bacterial', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D019015', 'descriptor_name': 'Geologic Sediments', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D008969', 'descriptor_name': 'Molecular Sequence Data', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D009566', 'descriptor_name': 'Nitrates', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D009566', 'descriptor_name': 'Nitrates', 'qualifier_ui': 'Q000378', 'qualifier_name': 'metabolism', 'is_major_topic': False}, {'descriptor_ui': 'D009573', 'descriptor_name': 'Nitrites', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D009573', 'descriptor_name': 'Nitrites', 'qualifier_ui': 'Q000378', 'qualifier_name': 'metabolism', 'is_major_topic': False}, {'descriptor_ui': 'D010088', 'descriptor_name': 'Oxidoreductases', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D010088', 'descriptor_name': 'Oxidoreductases', 'qualifier_ui': 'Q000235', 'qualifier_name': 'genetics', 'is_major_topic': False}, {'descriptor_ui': 'D010088', 'descriptor_name': 'Oxidoreductases', 'qualifier_ui': 'Q000378', 'qualifier_name': 'metabolism', 'is_major_topic': False}, {'descriptor_ui': 'D010802', 'descriptor_name': 'Phylogeny', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D012336', 'descriptor_name': 'RNA, Ribosomal, 16S', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D012336', 'descriptor_name': 'RNA, Ribosomal, 16S', 'qualifier_ui': 'Q000235', 'qualifier_name': 'genetics', 'is_major_topic': False}, {'descriptor_ui': 'D012623', 'descriptor_name': 'Seawater', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D017422', 'descriptor_name': 'Sequence Analysis, DNA', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D020592', 'descriptor_name': 'Shewanella', 'qualifier_ui': 'Q000378', 'qualifier_name': 'metabolism', 'is_major_topic': False}, {'descriptor_ui': 'D020592', 'descriptor_name': 'Shewanella', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D020592', 'descriptor_name': 'Shewanella', 'qualifier_ui': 'Q000145', 'qualifier_name': 'classification', 'is_major_topic': False}, {'descriptor_ui': 'D013045', 'descriptor_name': 'Species Specificity', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D026801', 'descriptor_name': 'Synteny', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}, {'descriptor_ui': 'D014871', 'descriptor_name': 'Water Microbiology', 'qualifier_ui': '', 'qualifier_name': None, 'is_major_topic': False}], 'locations_count': 2, 'locations': [{'is_oa': False, 'landing_page_url': 'https://doi.org/10.1039/c000396d', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S169293703', 'display_name': 'Molecular BioSystems', 'issn_l': '1742-2051', 'issn': ['1742-2051', '1742-206X'], 'is_oa': False, 'is_in_doaj': False, 'is_core': True, 'host_organization': 'https://openalex.org/P4310320556', 'host_organization_name': 'Royal Society of Chemistry', 'host_organization_lineage': ['https://openalex.org/P4310320556'], 'host_organization_lineage_names': ['Royal Society of Chemistry'], 'type': 'journal'}, 'license': None, 'license_id': None, 'version': None, 'is_accepted': False, 'is_published': False}, {'is_oa': False, 'landing_page_url': 'https://pubmed.ncbi.nlm.nih.gov/20458400', 'pdf_url': None, 'source': {'id': 'https://openalex.org/S4306525036', 'display_name': 'PubMed', 'issn_l': None, 'issn': None, 'is_oa': False, 'is_in_doaj': False, 'is_core': False, 'host_organization': 'https://openalex.org/I1299303238', 'host_organization_name': 'National Institutes of Health', 'host_organization_lineage': ['https://openalex.org/I1299303238'], 'host_organization_lineage_names': ['National Institutes of Health'], 'type': 'repository'}, 'license': None, 'license_id': None, 'version': None, 'is_accepted': False, 'is_published': False}], 'best_oa_location': None, 'sustainable_development_goals': [{'score': 0.89, 'id': 'https://metadata.un.org/sdg/14', 'display_name': 'Life below water'}], 'grants': [], 'datasets': [], 'versions': [], 'referenced_works_count': 81, 'referenced_works': ['https://openalex.org/W1851503055', 'https://openalex.org/W1934665271', 'https://openalex.org/W1971343525', 'https://openalex.org/W1971512337', 'https://openalex.org/W1978808231', 'https://openalex.org/W1980602152', 'https://openalex.org/W1984345785', 'https://openalex.org/W1993818124', 'https://openalex.org/W1994328828', 'https://openalex.org/W1997171198', 'https://openalex.org/W2002458103', 'https://openalex.org/W2003811454', 'https://openalex.org/W2003861506', 'https://openalex.org/W2008518848', 'https://openalex.org/W2010195422', 'https://openalex.org/W2012433126', 'https://openalex.org/W2013329467', 'https://openalex.org/W2014155904', 'https://openalex.org/W2015727998', 'https://openalex.org/W2020595865', 'https://openalex.org/W2023826879', 'https://openalex.org/W2041310365', 'https://openalex.org/W2042183674', 'https://openalex.org/W2048909489', 'https://openalex.org/W2049328674', 'https://openalex.org/W2056472979', 'https://openalex.org/W2056519327', 'https://openalex.org/W2061746072', 'https://openalex.org/W2065461553', 'https://openalex.org/W2066415750', 'https://openalex.org/W2066417696', 'https://openalex.org/W2068315263', 'https://openalex.org/W2071703036', 'https://openalex.org/W2073096885', 'https://openalex.org/W2073942416', 'https://openalex.org/W2074335496', 'https://openalex.org/W2075887306', 'https://openalex.org/W2079513101', 'https://openalex.org/W2080485611', 'https://openalex.org/W2087747384', 'https://openalex.org/W2091646599', 'https://openalex.org/W2093080343', 'https://openalex.org/W2093158629', 'https://openalex.org/W2093850566', 'https://openalex.org/W2096576637', 'https://openalex.org/W2097706568', 'https://openalex.org/W2106057691', 'https://openalex.org/W2106355622', 'https://openalex.org/W2106882534', 'https://openalex.org/W2108684521', 'https://openalex.org/W2111373249', 'https://openalex.org/W2112865539', 'https://openalex.org/W2117943666', 'https://openalex.org/W2118001436', 'https://openalex.org/W2119421613', 'https://openalex.org/W2119923823', 'https://openalex.org/W2121016876', 'https://openalex.org/W2121703775', 'https://openalex.org/W2128882835', 'https://openalex.org/W2133253129', 'https://openalex.org/W2134327957', 'https://openalex.org/W2136280642', 'https://openalex.org/W2137285295', 'https://openalex.org/W2137381673', 'https://openalex.org/W2139275024', 'https://openalex.org/W2140008067', 'https://openalex.org/W2144791567', 'https://openalex.org/W2145278346', 'https://openalex.org/W2146188580', 'https://openalex.org/W2154158126', 'https://openalex.org/W2156024487', 'https://openalex.org/W2157358322', 'https://openalex.org/W2158714788', 'https://openalex.org/W2160402258', 'https://openalex.org/W2161746138', 'https://openalex.org/W2162387553', 'https://openalex.org/W2163341682', 'https://openalex.org/W2164075646', 'https://openalex.org/W2165588705', 'https://openalex.org/W2175599497', 'https://openalex.org/W4248664566'], 'related_works': ['https://openalex.org/W4281704995', 'https://openalex.org/W2360862540', 'https://openalex.org/W2337090236', 'https://openalex.org/W2143431457', 'https://openalex.org/W2126383458', 'https://openalex.org/W2036697821', 'https://openalex.org/W1986111357', 'https://openalex.org/W1965596097', 'https://openalex.org/W1587943003', 'https://openalex.org/W144264712'], 'abstract_inverted_index': {'Remineralization': [0], 'of': [1, 38, 45, 55, 64, 71, 105, 126, 136, 169, 178, 188], 'organic': [2, 189, 203], 'matter': [3, 190, 204], 'in': [4, 9, 19, 98, 132, 144, 164, 191, 214], 'deep-sea': [5, 79, 217], 'sediments': [6, 70], 'is': [7, 25, 103], 'important': [8], 'oceanic': [10], 'biogeochemical': [11], 'cycles,': [12], 'and': [13, 28, 58, 89, 121, 130, 139, 148, 153, 155, 160, 205], 'bacteria': [14], 'play': [15], 'a': [16, 26, 43, 72, 122, 211], 'major': [17], 'role': [18], 'this': [20, 78, 179], 'process.': [21], 'Shewanella': [22, 80, 107], 'violacea': [23, 57, 112, 172], 'DSS12': [24], 'psychrophilic': [27], 'piezophilic': [29], 'γ-proteobacterium': [30], 'that': [31], 'was': [32], 'isolated': [33, 68], 'from': [34, 69], 'the': [35, 51, 62, 110, 170, 175, 215], 'surface': [36, 192], 'layer': [37], 'deep': [39], 'sea': [40], 'sediment': [41], 'at': [42], 'depth': [44], '5110': [46], 'm.': [47], 'Here,': [48], 'we': [49], 'report': [50], 'complete': [52], 'genome': [53, 63, 113, 173], 'sequence': [54], 'S.': [56, 65, 76, 111, 145, 165, 171], 'comparative': [59], 'analysis': [60, 168], 'with': [61], 'oneidensis': [66], 'MR-1,': [67], 'freshwater': [73], 'lake.': [74], 'Unlike': [75], 'oneidensis,': [77], 'possesses': [81], 'very': [82], 'few': [83], 'terminal': [84, 116], 'reductases': [85, 150], 'for': [86, 118, 134, 151], 'anaerobic': [87], 'respiration': [88, 120], 'no': [90], 'c-type': [91], 'cytochromes': [92], 'or': [93], 'outer': [94], 'membrane': [95], 'proteins': [96], 'involved': [97], 'respiratory': [99, 176], 'Fe(III)': [100], 'reduction,': [101], 'which': [102], 'characteristic': [104], 'most': [106], 'species.': [108], 'Instead,': [109], 'contains': [114], 'more': [115], 'oxidases': [117], 'aerobic': [119, 186], 'much': [123], 'greater': [124], 'number': [125], 'putative': [127], 'secreted': [128], 'proteases': [129], 'polysaccharases,': [131], 'particular,': [133], 'hydrolysis': [135], 'collagen,': [137], 'cellulose': [138], 'chitin,': [140], 'than': [141], 'are': [142, 162], 'encoded': [143], 'oneidensis.': [146], 'Transporters': [147], 'assimilatory': [149], 'nitrate': [152], 'nitrite,': [154], 'nitric': [156], 'oxide-detoxifying': [157], 'mechanisms': [158], '(flavohemoglobin': [159], 'flavorubredoxin)': [161], 'found': [163], 'violacea.': [166], 'Comparative': [167], 'revealed': [174], 'adaptation': [177], 'bacterium': [180], 'to': [181, 184, 199, 206], 'aerobiosis,': [182], 'leading': [183], 'predominantly': [185], 'oxidation': [187], 'sediments,': [193], 'as': [194, 196, 210], 'well': [195], 'its': [197], 'ability': [198], 'efficiently': [200], 'use': [201], 'diverse': [202], 'assimilate': [207], 'inorganic': [208], 'nitrogen': [209], 'survival': [212], 'strategy': [213], 'nutrient-poor': [216], 'floor.': [218]}, 'cited_by_api_url': 'https://api.openalex.org/works?filter=cites:W1976150931', 'counts_by_year': [{'year': 2023, 'cited_by_count': 1}, {'year': 2022, 'cited_by_count': 2}, {'year': 2021, 'cited_by_count': 3}, {'year': 2020, 'cited_by_count': 5}, {'year': 2019, 'cited_by_count': 3}, {'year': 2018, 'cited_by_count': 3}, {'year': 2017, 'cited_by_count': 7}, {'year': 2016, 'cited_by_count': 4}, {'year': 2015, 'cited_by_count': 3}, {'year': 2014, 'cited_by_count': 2}, {'year': 2013, 'cited_by_count': 2}, {'year': 2012, 'cited_by_count': 4}], 'updated_date': '2024-09-26T18:38:47.583902', 'created_date': '2016-06-24'}